View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_high_12 (Length: 291)
Name: NF18114_high_12
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 51122465 - 51122193
Alignment:
| Q |
1 |
attggaataaaatatctaaattaaactgatcaatattattcatatggagagtnnnnnnngattttaaaactggttttgattagcctagtagaatcggttg |
100 |
Q |
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| T |
51122465 |
attggaataaaatatctaaattaaactgatcaatattattcatatggagagtaaaaaaagattttaaaactggttttgattagcctagaagaatcggttg |
51122366 |
T |
|
| Q |
101 |
aaagatataatgtgttattcagattggaggagtattgcaagtatgttctcgtactcgaagacatcaatgattagttacttcacatgttgtttgaagggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51122365 |
aaagatataatgtgttattcagattggaggagtattgcaagtatgttctcgtactcgaagacatcaatgattagttacttcacatgttgtttgaagggaa |
51122266 |
T |
|
| Q |
201 |
tcattgtgcaaatgtacttcaaaaaatgtcagctactagcagaactgaacatctcaatatcttatcttcacca |
273 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
51122265 |
tcattgtgcaaatgtacttcaaaaaatgtcagctacttgcagaactgaacatctcaatatcttatcttcacca |
51122193 |
T |
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