View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_high_8 (Length: 398)
Name: NF18114_high_8
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 22540640 - 22540294
Alignment:
| Q |
17 |
taggataaaactctaagtcattatttacccaaaattcaaccgcagaacaataatagaaaaaactttctatctattgcttaattaaggaatcttgcttaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22540640 |
taggataaaactctaagtcattatttacccaaaattcaaccacagaacaataatagaaaaaactttctatctattgcttaattaaggaatcttgcttaat |
22540541 |
T |
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| Q |
117 |
ttaatacaatcatataaaccataatcaaaatccaatacaagaaaaaacaagcatagttacttttatgcaatccggtgaacaaccagcactaaaattgatc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22540540 |
ttaatacaatcatataaaccataatcaaaatccaatacaagaaaaaacaagcatagttacttttatgcaatccggtgaacaaccagcactaaaattgatc |
22540441 |
T |
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| Q |
217 |
acagtatcacactgtttccaataatttcttttgtgtgctaaatcaggctggtaaacactagtaattaactgagattgaacgttgaaaaggtgtgtctttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22540440 |
acagtatcacactgtttccaataatttcttttgtgtgctaaatcaggctggtaaacactagtaattaactgagattgaacgttgaaaaggtgtgtctttt |
22540341 |
T |
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| Q |
317 |
gaagtttcagataatgtaggcaatgggtgtagtagttagtaagaaaa |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22540340 |
gaagtttcagataatgtaggcaatgggtgtagtagttagtaagaaaa |
22540294 |
T |
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