View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_low_12 (Length: 368)
Name: NF18114_low_12
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 34122076 - 34122230
Alignment:
| Q |
17 |
agtgtctgatcttcgtatttgtgttagtacttcataaataccttttaactaattggctaactaacttcattcataaggttttaaatcaaagttgcacaaa |
116 |
Q |
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| T |
34122076 |
agtgtctgatcttcgtatttgtgttagtacttcataaataccttttaactaattggctaactaacttcattcataaggttttaaatcaaagttgcagaaa |
34122175 |
T |
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| Q |
117 |
tcattgtggtcgcgtcgtgatatttgatattattgaaaatcatgatatagcttat |
171 |
Q |
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| T |
34122176 |
tcattgtggtcgcgtcgtgatatttgatattattgaaaatcatgatatagcttat |
34122230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 218 - 358
Target Start/End: Original strand, 34122233 - 34122373
Alignment:
| Q |
218 |
tttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatctgaagaacattgtgcaaacattgtttgaaca |
317 |
Q |
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| T |
34122233 |
tttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatttgaagaacattgtgcaaacattgtttgaaca |
34122332 |
T |
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| Q |
318 |
ttgtggacataaaaagccttaccttgtagaccatgatgatg |
358 |
Q |
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| T |
34122333 |
ttgtggacataaaaagccttaccttgtagaccatgatgatg |
34122373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 201 - 327
Target Start/End: Original strand, 34110461 - 34110587
Alignment:
| Q |
201 |
gatatttaagaatcttgtttgtttgtttggactaggaaaatttggggaaaatatattgttctttcatgtggcgaaaaatccagatctgaagaacattgtg |
300 |
Q |
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| T |
34110461 |
gatatttaagaatcttatttgtttgtttggactaggtaaatttggggaaaatatattgttcttcactgtgtcaaaaattccaaatttgaagaacattgtg |
34110560 |
T |
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| Q |
301 |
caaacattgtttgaacattgtggacat |
327 |
Q |
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| T |
34110561 |
cagacattatttcgacattgtggacat |
34110587 |
T |
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