View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18114_low_13 (Length: 365)

Name: NF18114_low_13
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18114_low_13
NF18114_low_13
[»] scaffold0026 (1 HSPs)
scaffold0026 (51-348)||(12534-12830)
[»] scaffold0634 (1 HSPs)
scaffold0634 (13-348)||(2790-3123)
[»] chr2 (16 HSPs)
chr2 (13-347)||(26582900-26583237)
chr2 (52-348)||(23168954-23169251)
chr2 (52-348)||(23580211-23580508)
chr2 (20-279)||(23062869-23063127)
chr2 (30-181)||(26884489-26884639)
chr2 (19-164)||(24660876-24661021)
chr2 (21-82)||(5706698-5706759)
chr2 (13-115)||(25181506-25181606)
chr2 (13-91)||(29281368-29281446)
chr2 (19-91)||(21907750-21907822)
chr2 (21-164)||(23089636-23089779)
chr2 (51-279)||(23264301-23264524)
chr2 (21-87)||(23878325-23878391)
chr2 (19-91)||(27208322-27208394)
chr2 (19-91)||(27210657-27210729)
chr2 (13-82)||(9957-10026)
[»] chr3 (11 HSPs)
chr3 (16-348)||(41455769-41456100)
chr3 (24-348)||(18914231-18914553)
chr3 (264-321)||(18136117-18136174)
chr3 (51-182)||(13302844-13302974)
chr3 (19-182)||(13324400-13324562)
chr3 (51-182)||(13313520-13313650)
chr3 (21-81)||(24192274-24192334)
chr3 (268-321)||(18129607-18129660)
chr3 (21-91)||(55499728-55499798)
chr3 (21-91)||(16802069-16802139)
chr3 (212-316)||(9533232-9533335)
[»] chr6 (21 HSPs)
chr6 (13-321)||(29614814-29615127)
chr6 (20-305)||(25396343-25396627)
chr6 (16-129)||(12167637-12167749)
chr6 (16-129)||(19286546-19286658)
chr6 (16-129)||(19877730-19877842)
chr6 (16-129)||(19786538-19786650)
chr6 (16-129)||(19883506-19883618)
chr6 (30-181)||(19300359-19300509)
chr6 (21-159)||(18799754-18799892)
chr6 (19-156)||(19471946-19472082)
chr6 (21-82)||(34640663-34640724)
chr6 (21-82)||(34647337-34647398)
chr6 (273-348)||(12167462-12167535)
chr6 (273-348)||(19786751-19786824)
chr6 (273-348)||(19877555-19877628)
chr6 (273-348)||(19883331-19883404)
chr6 (273-347)||(19286372-19286444)
chr6 (21-164)||(21565793-21565936)
chr6 (16-91)||(25470373-25470448)
chr6 (13-82)||(20008553-20008622)
chr6 (51-114)||(9186841-9186903)
[»] scaffold0456 (2 HSPs)
scaffold0456 (51-218)||(241-407)
scaffold0456 (51-218)||(7386-7552)
[»] scaffold0029 (1 HSPs)
scaffold0029 (51-320)||(111008-111284)
[»] scaffold0249 (1 HSPs)
scaffold0249 (170-321)||(7517-7667)
[»] chr7 (18 HSPs)
chr7 (13-254)||(13742860-13743097)
chr7 (13-320)||(13123582-13123898)
chr7 (13-320)||(12710511-12710827)
chr7 (20-258)||(46625166-46625403)
chr7 (16-129)||(13006706-13006818)
chr7 (20-279)||(13678649-13678906)
chr7 (273-348)||(13742729-13742803)
chr7 (21-164)||(16676623-16676766)
chr7 (21-164)||(17650859-17651002)
chr7 (21-80)||(12591318-12591377)
chr7 (273-347)||(13006532-13006604)
chr7 (19-91)||(14320243-14320315)
chr7 (225-316)||(18607248-18607339)
chr7 (212-316)||(147453-147556)
chr7 (21-114)||(11383462-11383554)
chr7 (13-91)||(16090457-16090535)
chr7 (262-316)||(16475929-16475983)
chr7 (277-321)||(13318007-13318051)
[»] scaffold1773 (2 HSPs)
scaffold1773 (13-258)||(324-568)
scaffold1773 (273-321)||(221-269)
[»] chr4 (15 HSPs)
chr4 (13-258)||(8046499-8046744)
chr4 (264-321)||(14555881-14555938)
chr4 (30-170)||(11847397-11847537)
chr4 (119-182)||(14485975-14486037)
chr4 (52-164)||(8834185-8834297)
chr4 (20-81)||(14486052-14486113)
chr4 (21-82)||(53483022-53483083)
chr4 (20-112)||(15244566-15244658)
chr4 (212-313)||(18212523-18212623)
chr4 (52-115)||(27905613-27905675)
chr4 (20-164)||(15307415-15307563)
chr4 (13-91)||(16147436-16147514)
chr4 (273-318)||(8046777-8046822)
chr4 (20-162)||(13887086-13887228)
chr4 (20-162)||(13887943-13888085)
[»] scaffold0154 (1 HSPs)
scaffold0154 (19-169)||(30194-30344)
[»] scaffold0053 (2 HSPs)
scaffold0053 (20-277)||(81826-82082)
scaffold0053 (13-91)||(80096-80174)
[»] scaffold0028 (2 HSPs)
scaffold0028 (20-304)||(65265-65548)
scaffold0028 (196-258)||(1274-1336)
[»] chr8 (8 HSPs)
chr8 (13-321)||(23865684-23866002)
chr8 (264-319)||(19987990-19988045)
chr8 (20-279)||(18613409-18613664)
chr8 (273-320)||(19902808-19902855)
chr8 (20-164)||(21931018-21931162)
chr8 (13-115)||(24321276-24321376)
chr8 (265-315)||(20005423-20005473)
chr8 (13-65)||(14057219-14057271)
[»] scaffold0004 (2 HSPs)
scaffold0004 (20-279)||(116052-116309)
scaffold0004 (19-164)||(129247-129393)
[»] scaffold0117 (1 HSPs)
scaffold0117 (13-320)||(9243-9559)
[»] scaffold0138 (1 HSPs)
scaffold0138 (20-164)||(1117-1261)
[»] chr5 (11 HSPs)
chr5 (16-255)||(23527777-23528016)
chr5 (264-321)||(22232436-22232493)
chr5 (19-151)||(18408553-18408685)
chr5 (16-115)||(34829432-34829530)
chr5 (13-115)||(22460506-22460606)
chr5 (13-69)||(19236294-19236350)
chr5 (16-107)||(20781102-20781192)
chr5 (212-279)||(23112480-23112546)
chr5 (273-348)||(23527674-23527747)
chr5 (134-166)||(20819456-20819488)
chr5 (134-166)||(20826556-20826588)
[»] scaffold1061 (1 HSPs)
scaffold1061 (51-258)||(1607-1813)
[»] scaffold0317 (1 HSPs)
scaffold0317 (20-279)||(542-799)
[»] chr1 (12 HSPs)
chr1 (264-321)||(20941657-20941714)
chr1 (16-129)||(41111214-41111326)
chr1 (19-114)||(18712098-18712193)
chr1 (30-181)||(19961472-19961622)
chr1 (20-164)||(22030360-22030504)
chr1 (273-348)||(41111039-41111112)
chr1 (51-279)||(11157328-11157554)
chr1 (13-115)||(20851738-20851838)
chr1 (13-115)||(21705625-21705725)
chr1 (13-115)||(21710167-21710268)
chr1 (13-82)||(20858365-20858434)
chr1 (212-316)||(20438224-20438327)
[»] scaffold0348 (1 HSPs)
scaffold0348 (264-321)||(1527-1584)
[»] scaffold0139 (1 HSPs)
scaffold0139 (24-279)||(15604-15856)
[»] scaffold0077 (2 HSPs)
scaffold0077 (269-321)||(17972-18024)
scaffold0077 (269-321)||(23605-23657)
[»] scaffold0001 (3 HSPs)
scaffold0001 (30-181)||(493650-493800)
scaffold0001 (273-321)||(174440-174488)
scaffold0001 (20-164)||(525062-525205)
[»] scaffold0261 (1 HSPs)
scaffold0261 (16-181)||(24178-24342)
[»] scaffold0031 (2 HSPs)
scaffold0031 (20-164)||(121200-121344)
scaffold0031 (20-164)||(132077-132221)
[»] scaffold0461 (2 HSPs)
scaffold0461 (19-114)||(658-752)
scaffold0461 (30-114)||(7605-7688)
[»] scaffold0232 (1 HSPs)
scaffold0232 (57-164)||(19059-19166)
[»] scaffold0090 (1 HSPs)
scaffold0090 (19-138)||(17492-17611)
[»] scaffold0222 (1 HSPs)
scaffold0222 (19-151)||(16083-16215)
[»] scaffold0085 (1 HSPs)
scaffold0085 (13-115)||(4277-4377)
[»] scaffold0025 (1 HSPs)
scaffold0025 (21-81)||(15061-15121)
[»] scaffold0476 (1 HSPs)
scaffold0476 (21-91)||(3905-3975)
[»] scaffold0094 (1 HSPs)
scaffold0094 (51-156)||(51552-51657)
[»] scaffold0034 (1 HSPs)
scaffold0034 (16-181)||(72565-72729)
[»] scaffold0483 (1 HSPs)
scaffold0483 (30-181)||(11631-11782)
[»] scaffold0124 (1 HSPs)
scaffold0124 (19-91)||(34938-35010)
[»] scaffold0337 (1 HSPs)
scaffold0337 (212-316)||(9950-10053)
[»] scaffold0247 (1 HSPs)
scaffold0247 (21-164)||(10610-10753)
[»] scaffold0453 (1 HSPs)
scaffold0453 (52-181)||(11196-11324)
[»] scaffold0020 (1 HSPs)
scaffold0020 (19-279)||(102529-102787)
[»] scaffold0720 (1 HSPs)
scaffold0720 (30-115)||(3882-3966)
[»] scaffold0206 (1 HSPs)
scaffold0206 (30-91)||(18060-18121)
[»] scaffold0235 (1 HSPs)
scaffold0235 (19-114)||(15539-15633)
[»] scaffold0169 (1 HSPs)
scaffold0169 (120-164)||(6299-6343)
[»] scaffold1427 (1 HSPs)
scaffold1427 (212-279)||(1207-1273)
[»] scaffold0335 (1 HSPs)
scaffold0335 (120-164)||(3328-3372)
[»] scaffold0310 (1 HSPs)
scaffold0310 (21-65)||(6907-6951)
[»] scaffold0023 (1 HSPs)
scaffold0023 (51-115)||(134820-134882)


Alignment Details
Target: scaffold0026 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 51 - 348
Target Start/End: Original strand, 12534 - 12830
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 150  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12534 gtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggggacttcttgagcattctaaaatatttcctttaacttgt 12633  T
Q  151 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 250  Q
    ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  12634 atatcccttgtataggtatcagaatcctactagaacaagccggtgatcgaattggttgatgttagtgaattttggagatgattgagtaagaaatcaagtg 12733  T
Q  251 aatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    ||| |||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  12734 aatgtataa-ctattgaatgaaattgatgtatgcgcataattataattaattgtgtatgttctggattgttagaactctcggagtagtaagtcatatg 12830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0634 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: scaffold0634
Description:

Target: scaffold0634; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 3123 - 2790
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||    
T  3123 cagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcctctttctgaacttttgcttcgtgcacgaggg 3024  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||    
T  3023 gacttcttgagcattctaaaatatttcctttaacttgtataacccttgtataggtaccagaatcccactagaacaagccggtgatcgaattggttgatgt 2924  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttc 312  Q
    |||||||| || ||||||||||||| |||||||| |||||||||||| |||||||||||| |||||||||| |||||||||||| ||||||| |||||||    
T  2923 tagtgaatattggagatgattgagtttgaaatcatgtgaatatataa-ttattgaatgaatttgatgtatgcgcataattataaataattgtctatgttc 2825  T
Q  313 tggattgttagaattttcggagtagtaagtcatatg 348  Q
    ||||||||| | | || |||||||||||||||||||    
T  2824 tggattgtttg-agttgcggagtagtaagtcatatg 2790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 26583237 - 26582900
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||||||||||||||| |||||| | |||||||||||||||| || ||||||||||||  || |||| ||||| |||||||| |||||    
T  26583237 cagacctactgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtaagtcttagtcagccttcttctgaacttttgtttcgtgcaggaggg 26583138  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||| ||| |||| ||||||| |||||||||| || |||||| | || ||||| |||||| ||| ||||||||||||| ||| |||    
T  26583137 gacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgactcctattagaactagccggtgatcgaattgattggtgt 26583038  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaatat----ataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtat 308  Q
    |||| ||| || ||||||||||||||||||||| |||||||||    ||||  | | |||||  ||||||||||| |||||||||||| |||||||||||    
T  26583037 tagtaaatgttggagatgattgagtatgaaatcgagtgaatatatacataacatgtggaatgtgattgatgtatgcgcataattataaataattgtgtat 26582938  T
Q  309 gttctggattgttagaattttcggagtagtaagtcatat 347  Q
    ||||||||||||| | | || ||||||||||||||||||    
T  26582937 gttctggattgtttg-agttgcggagtagtaagtcatat 26582900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 52 - 348
Target Start/End: Original strand, 23168954 - 23169251
Alignment:
Q  52 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 150  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23168954 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23169052  T
Q  151 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 250  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23169053 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23169152  T
Q  251 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23169153 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23169251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 52 - 348
Target Start/End: Original strand, 23580211 - 23580508
Alignment:
Q  52 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-tcttgagcattctaaaatgtttcctttaacttgt 150  Q
    ||||||||||||  |||| |||||||||||||||| ||||  || | |||||| || |||||||  | ||| | ||||||||||||||| || |||||||    
T  23580211 tcgcttaagcgagctgaggcttagtcagcctctttctgaaaatt-gtttcgtgtactaggggacccttttgggtattctaaaatgtttctttcaacttgt 23580309  T
Q  151 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 250  Q
    ||||||||||||||||||| || ||||||||||||||  |||||||||| |||||||||||||| |||||||| |||||| ||||||||||||||| |||    
T  23580310 ataacccttgtataggtattaggatcctactagaacactctggtgatcgcattggttgatgttaatgaattttggagatgtttgagtatgaaatcatgtg 23580409  T
Q  251 aat--atataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||  ||||||  | | |||||  | ||||||||| |||||||||||| | ||||||||||| |||||||||| | | || ||||||||||||| |||||    
T  23580410 aatgtatataacatgtggaatgtgaatgatgtatgcgcataattataaatgattgtgtatgtgctggattgtttg-agttgcggagtagtaagttatatg 23580508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 23063127 - 23062869
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||||   |||||||||||| |||||||||  ||||| |||||||  |||||| | |     
T  23063127 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagttgaccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcctt 23063029  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact-agaacaagctggtgatcgaattggttgatgttagtg 217  Q
    |||||||||  |||||||||| || |||||||||||||||| ||||   | | |||||||||| | ||||   |||| |||||||| |||||  ||||||    
T  23063028 ttgagcatttaaaaatgtttctttcaacttgtataacccttatatataca-ctgaatcctactgaaaacactttggtaatcgaattagttgagtttagtg 23062930  T
Q  218 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    || ||| ||||||||||||||||||| | |||||| ||||| | | ||||||||| ||||||    
T  23062929 aa-tttggagatgattgagtatgaaacctagtgaacatatactatgttgaatgaacttgatg 23062869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 26884639 - 26884489
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 128  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||||||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  26884639 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctctttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 26884541  T
Q  129 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 181  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  26884540 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 26884489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 24661021 - 24660876
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    |||||| ||||||||||||||| || | | | ||||||||||| |||   | ||||||||||| |||||||||||||  |||||||||| |||||| | |    
T  24661021 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcaaagaaggtcttagtcagccactttttgaatttta-cttcgtgcactaggggatcct 24660923  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
     ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  24660922 tttgagcattttaaaatgtttctttcaacttgtataacctttgtata 24660876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 5706698 - 5706759
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 82  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  5706698 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 5706759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 25181506 - 25181606
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| |||||||||||  ||||| | |||||||||||||| ||||  ||||||||||| ||| |||| | ||||||||||||| ||||    
T  25181506 cagacctactgtaagctggtcgcttaagcaaactagccgtcgcttaagcgaactgagtgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggg 25181603  T
Q  113 gac 115  Q
    |||    
T  25181604 gac 25181606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 29281446 - 29281368
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  29281446 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 29281368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 21907822 - 21907750
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 91  Q
    |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  21907822 ttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 21907750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 23089636 - 23089779
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttc-t 119  Q
    |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| |||  | |    
T  23089636 ctgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccctt 23089734  T
Q  120 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  23089735 tgagcattgaaacatggttccttcaacttgtataacccttatata 23089779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 51 - 279
Target Start/End: Complemental strand, 23264524 - 23264301
Alignment:
Q  51 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 148  Q
    ||||||||||||||| ||| |||||||||||| ||||||||| ||| || |||||||| |||||| | | ||||||||| | ||||||| | || |||||    
T  23264524 gtcgcttaagcgaagatga-ccttagtcagccactttttgaacttt-gcctcgtgcactaggggatccttttgagcatttttaaatgttcctttcaactt 23264427  T
Q  149 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 248  Q
    |||||||| || ||||     |  |||||||| | ||||   |||| |||||||| |||||  |||||||| ||| |||||||| |||||||||| ||||    
T  23264426 gtataacctttatataca---ctaaatcctaccaaaacact-tggtaatcgaattagttgagtttagtgaa-tttggagatgatcgagtatgaaaccaag 23264332  T
Q  249 tgaatatataatttattgaatgaaattgatg 279  Q
    |||| ||||| | | ||||||||| ||||||    
T  23264331 tgaacatatactatgttgaatgaacttgatg 23264301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 87
Target Start/End: Complemental strand, 23878391 - 23878325
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttt 87  Q
    |||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||    
T  23878391 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttt 23878325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 27208322 - 27208394
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27208322 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27208394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 27210657 - 27210729
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    |||||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  27210657 ttctgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 27210729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 10026 - 9957
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 82  Q
    ||||||| |||||||| ||||||||||| |||||| | ||||||||||| || ||||  |||| ||||||    
T  10026 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcaaactgagtgttagacagcct 9957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 138; Significance: 5e-72; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 41455769 - 41456100
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||||||||||| ||| |||| | |||||| ||||| ||||||||    
T  41455769 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcctttttctgaactgttgcttagtgcatgaggggac 41455868  T
Q  116 ttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttag 215  Q
    ||| ||||| ||||  ||  |   ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||    
T  41455869 ttcctgagcgttctttaacttcctctttaacttgtataatcctagtataggtatcagaatcctactagaacaagctggcaatcgaattgattggtgttag 41455968  T
Q  216 tgaatttttgagatgattgagtatgaa-atcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctg 314  Q
    | ||| || ||||| |||||||| ||| || ||||||||||| ||  |||||||||||||||||||| | |||||||||||| |||||||| ||||||||    
T  41455969 taaatgttggagataattgagtaggaagattaagtgaatatacaa-ctattgaatgaaattgatgtaagcgcataattataaataattgtgaatgttctg 41456067  T
Q  315 gattgttagaattttcggagtagtaagtcatatg 348  Q
     |||||| | | || |||||||||||||||||||    
T  41456068 aattgtttg-agttacggagtagtaagtcatatg 41456100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 24 - 348
Target Start/End: Complemental strand, 18914553 - 18914231
Alignment:
Q  24 taagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttg 121  Q
    ||||||||||||||||| ||||   |  |||||||||||||| ||| |||||||||||| ||||| |||||||||| |||||||  |||||| | | |||    
T  18914553 taagccggtcgcttaagcgaacctgccatcgcttaagcgaagatga-ccttagtcagccactttt-gaatttttgcctcgtgcattaggggatccttttg 18914456  T
Q  122 agcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatt 221  Q
    |||||   | ||| |||| |  ||||||||||||| || ||||   | || |||||||||| ||||  ||  |||| ||||| |||||||||||||||||    
T  18914455 agcatataataatatttcttccaacttgtataacctttatatataca-cataatcctactaaaacactctattgatggaattagttgatgttagtgaatt 18914357  T
Q  222 tttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    || |||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18914356 ttggagatgattgagtatgaaatcaagtgaatatatattatgttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18914257  T
Q  322 agaattttcggagtagtaagtcatatg 348  Q
     ||| || |||||| ||||||||||||    
T  18914256 ggaa-ttgcggagttgtaagtcatatg 18914231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 18136117 - 18136174
Alignment:
Q  264 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18136117 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18136174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 13302844 - 13302974
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 149  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||| || ||||||| || | |||     
T  13302844 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcattcaaagatgtttctttcagctta 13302942  T
Q  150 tataacccttgtataggtatcagaatcctacta 182  Q
    ||||||||||||||||||| || ||||||||||    
T  13302943 tataacccttgtataggtaaca-aatcctacta 13302974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 182
Target Start/End: Original strand, 13324400 - 13324562
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    ||||| ||||| |||||||||| || | | |  ||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | |    
T  13324400 ttctgcaagccagtcgcttaagcgagccagccttcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggaccct 13324498  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 182  Q
     |||||||||| || ||||||| || | ||| ||||||||||||||||||| || ||||||||||    
T  13324499 tttgagcattcaaagatgtttctttcagcttatataacccttgtataggtaaca-aatcctacta 13324562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 182
Target Start/End: Original strand, 13313520 - 13313650
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 149  Q
    |||||||||||||  |||||||||||||||| |||| |||| ||||||||||||||  |||||| | | |||||||||  || ||||||| || | |||     
T  13313520 gtcgcttaagcgagctgagccttagtcagccactttctgaa-ttttgcttcgtgcattaggggacccttttgagcatttaaagatgtttctttcagctta 13313618  T
Q  150 tataacccttgtataggtatcagaatcctacta 182  Q
    ||||||||||||||||||| || ||||||||||    
T  13313619 tataacccttgtataggtaaca-aatcctacta 13313650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 24192334 - 24192274
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 81  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||  ||||||||||||    
T  24192334 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 24192274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 321
Target Start/End: Original strand, 18129607 - 18129660
Alignment:
Q  268 atgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| ||||||    
T  18129607 atgaaattgatgtacgagcataattataattaattgtgaatgttctgaattgtt 18129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 55499728 - 55499798
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||    ||||||||||| |||||||||    
T  55499728 ctgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgatcttagtcagccactttttgaa 55499798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 16802069 - 16802139
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    |||||||||||||||||||| || ||| | |||| |||||||||||   ||||||| |||| |||||||||    
T  16802069 ctgtaagccggtcgcttaagcgagctagccgtcgtttaagcgaagttgaccttagttagccactttttgaa 16802139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 9533335 - 9533232
Alignment:
Q  212 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 311  Q
    |||||||||||  |||||||||||||||||||  ||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  9533335 ttagtgaatttg-gagatgattgagtatgaaactaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 9533237  T
Q  312 ctgga 316  Q
    |||||    
T  9533236 ctgga 9533232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 134; Significance: 1e-69; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 29614814 - 29615127
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| ||||||| |||||||||||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| |||||    
T  29614814 cagacctactgtaagtcggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgaggg 29614910  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
     ||||||||||||||||| ||| |||||||||||| |||||||||| | ||||||| ||||||| || |||||| ||| |||||| |||||| ||| |||    
T  29614911 aacttcttgagcattctataatatttcctttaactagtataaccctggcataggtaacagaatcttattagaacgagccggtgattgaattgattggtgt 29615010  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtga--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgt 304  Q
    |||| ||| || ||||||||||||||||||| |||||||        ||||||||  | | |||||  ||||||||||||| |||||||||| |||||||    
T  29615011 tagtaaatgttggagatgattgagtatgaaaacaagtgaatatgtgtatatataacatgtggaatgtgattgatgtatgtgaataattataaataattgt 29615110  T
Q  305 gtatgttctggattgtt 321  Q
    |||||||||||||||||    
T  29615111 gtatgttctggattgtt 29615127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 20 - 305
Target Start/End: Complemental strand, 25396627 - 25396343
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | |||||||| || ||||||||||| | |||| |||||| |||| | | |     
T  25396627 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcaaccactttttgaattat-gcttagtgcactagggaatcctt 25396529  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 218  Q
    ||||||||||||||||||||| || ||||||||||||||||||||| | | | ||||||||||  ||||   |||| ||||||||||||||  |||||||    
T  25396528 ttgagcattctaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctactgaaacacattggtaatcgaattggttgaatttagtga 25396430  T
Q  219 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtg 305  Q
    ||||| || |||||||||||||||| |||||||||||||| |   ||||||||| |||||| ||  | || ||||| ||||||||||    
T  25396429 attttggatatgattgagtatgaaaccaagtgaatatatactaggttgaatgaacttgatgcattagtatgattattattaattgtg 25396343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 12167749 - 12167637
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  12167749 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 12167651  T
Q  116 ttcttgagcattct 129  Q
    ||||||||| ||||    
T  12167650 ttcttgagcgttct 12167637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 19286658 - 19286546
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  19286658 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 19286560  T
Q  116 ttcttgagcattct 129  Q
    ||||||||| ||||    
T  19286559 ttcttgagcgttct 19286546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 19877842 - 19877730
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  19877842 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 19877744  T
Q  116 ttcttgagcattct 129  Q
    ||||||||| ||||    
T  19877743 ttcttgagcgttct 19877730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 19786538 - 19786650
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | ||||||  |||| ||||||||    
T  19786538 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttaatgcatgaggggac 19786636  T
Q  116 ttcttgagcattct 129  Q
    ||||||||| ||||    
T  19786637 ttcttgagcgttct 19786650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 19883618 - 19883506
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| | ||||| ||| |||| | |||||| ||||| ||||||||    
T  19883618 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaattagcct-tttctgaactgttgcttagtgcatgaggggac 19883520  T
Q  116 ttcttgagcattct 129  Q
    ||||||||| ||||    
T  19883519 ttcttgagcgttct 19883506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 19300359 - 19300509
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 128  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19300359 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19300457  T
Q  129 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 181  Q
    | || |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19300458 ttaagtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19300509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 18799892 - 18799754
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 119  Q
    |||||||||||||||||||| |||||| | |||||||||||||||| | |||||||||||| |||||||||  ||||| || ||||  |||||| | | |    
T  18799892 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtcaaccttagtcagccactttttgaa-ctttgcctcatgcattaggggacccttt 18799794  T
Q  120 tgagcattctaaaatgtttcctttaacttgtataaccctt 159  Q
    | ||||||| || ||||| | || ||||||||||||||||    
T  18799793 ttagcattcaaacatgttcctttcaacttgtataaccctt 18799754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 19471946 - 19472082
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    |||||| ||||||||||||||| || | | |  ||||||||||||||   | ||| ||||||| ||||||||||||| ||||||||||| |||||| | |    
T  19471946 ttctgtgagccggtcgcttaagcgagccagccatcgcttaagcgaagaaggtctt-gtcagccactttttgaatttt-gcttcgtgcactaggggatcct 19472043  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacc 156  Q
     ||||||||| | |||||||||||| |||||||||||||    
T  19472044 tttgagcattttgaaatgtttccttcaacttgtataacc 19472082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 34640663 - 34640724
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 82  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34640663 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34640724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 82
Target Start/End: Original strand, 34647337 - 34647398
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 82  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||||    
T  34647337 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagcct 34647398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 12167535 - 12167462
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||    
T  12167535 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatg 12167462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 19786751 - 19786824
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||    
T  19786751 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttat-ggagtagtaagtcatatg 19786824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 19877628 - 19877555
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||    
T  19877628 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatg 19877555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 19883404 - 19883331
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||    
T  19883404 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatg 19883331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 19286444 - 19286372
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatat 347  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | |||||||||||||||||    
T  19286444 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatat 19286372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 21565793 - 21565936
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 119  Q
    |||||||||||||||||||| |||||    ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  ||| || | | |    
T  21565793 ctgtaagccggtcgcttaagcgaactggacgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggagacccttt 21565891  T
Q  120 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  21565892 tgagcattgaaacatggttccttcaacttgtataacccttatata 21565936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 25470373 - 25470448
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    |||| |||||||  ||||||||||| ||||||   |||||||||||||||||| ||||||||||||| ||| ||||    
T  25470373 acctactgtaagttggtcgcttaagcgaactagacgtcgcttaagcgaagtgaaccttagtcagcctttttctgaa 25470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 20008553 - 20008622
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 82  Q
    ||||||| |||||||| ||||||||||| |||||| | || ||||||||||| ||||  |||| ||||||    
T  20008553 cagacctactgtaagctggtcgcttaagcgaactagccgttgcttaagcgaactgagtgttagacagcct 20008622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 9186903 - 9186841
Alignment:
Q  51 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 114  Q
    ||||||||||||||| ||| |||||||||||| |||||||||  |||||||||||||| ||||||    
T  9186903 gtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcttcgtgcactagggga 9186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 407 - 241
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 150  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  407 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 309  T
Q  151 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 218  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  308 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 7552 - 7386
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 150  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||| || |||||||    
T  7552 gtcgcttaagcgaagtgaaccttagtcagcctctttctgaatttt-gcttcgtgcacaaggggacatcttgagcattctaaaatatttctttcaacttgt 7454  T
Q  151 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 218  Q
    |||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7453 ataaactttgtataggtatcagaatcctactagaacacgctggtgatcgaattggttgatgttagtga 7386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 51 - 320
Target Start/End: Complemental strand, 111284 - 111008
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttcttgagcattctaaaatgtttcctttaacttgt 150  Q
    ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| ||||||||||||||||||||||| ||| | |||||||||| ||    
T  111284 gtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggggacttcttgagcattctataatttctcctttaactagt 111186  T
Q  151 ataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtg 250  Q
    |||||||| || |||||| | |||||||| |||||||||| |||||| | |||| ||| ||||||| ||| || |||||||||| |||||||| ||||||    
T  111185 ataaccctggtgtaggtaactgaatcctattagaacaagccggtgattggattgattggtgttagtaaatgttggagatgattgtgtatgaaaacaagtg 111086  T
Q  251 a--------atatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgt 320  Q
    |        ||||||||  | | |||||  |||||||||||||| ||||||||| |||||||||| ||||||||||||    
T  111085 aatatgtatatatataacatgtggaatgtgattgatgtatgtgcgtaattataaataattgtgtaggttctggattgt 111008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 170 - 321
Target Start/End: Original strand, 7517 - 7667
Alignment:
Q  170 cagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaat 269  Q
    ||||||||||||| || |  | |||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | | ||||||    
T  7517 cagaatcctactaaaatactccggtgatcgaattagttga-gttagtgaattttggagatgattgagtatgaaatcaagtgaatatatagtatgttgaat 7615  T
Q  270 gaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||    
T  7616 gaaattgatgtatgagcataattataattaattgggtatgttctgggttgtt 7667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 13743097 - 13742860
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| || ||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||   | |||| ||||| |||||||| |||||    
T  13743097 cagacctactataagccggtcgcttaagcgaactagccgtcgcttaagcgaagtgagccttagtcagcct---tctgaacttttgtttcgtgcatgaggg 13743001  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||| ||| |||| ||||||| |||||||||| || |||||| | |||||||| |||||| ||| |  ||| | |||  ||| |||    
T  13743000 gacttcttgagcattctataatatttcttttaactagtataaccctggtgtaggtaaccgaatcctattagaacgagccgaggattggattaattggtgt 13742901  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaata 254  Q
    |||| ||| || ||| |||||| |||||||| ||||||||||    
T  13742900 tagt-aatgttggaggtgattgtgtatgaaaacaagtgaata 13742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 13123582 - 13123898
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  13123582 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggg 13123680  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | |    
T  13123681 gacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtat 13123780  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaatt 302  Q
    |||| ||| || | | |||||| ||||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| |||||    
T  13123781 tagtaaatgttggtgttgattgtgtatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataatt 13123880  T
Q  303 gtgtatgttctggattgt 320  Q
    |||||||||||| |||||    
T  13123881 gtgtatgttctgaattgt 13123898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 12710511 - 12710827
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  12710511 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggg 12710609  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||| ||  |   |||||||| |||||||| | || ||||||  |||| |||| || ||||||| |||||| | |||| ||| | |    
T  12710610 gacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagaagaagcctattataacaagccggtgattggattgattggtat 12710709  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaatt 302  Q
    |||| ||| || | | |||||| ||||| ||  |||||||||  |||| || |||        |||||  |||||||||||||||||||||||| |||||    
T  12710710 tagtaaatgttggtgttgattgtgtatgtaaataagtgaatacgtatatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataatt 12710809  T
Q  303 gtgtatgttctggattgt 320  Q
    |||||||||||| |||||    
T  12710810 gtgtatgttctgaattgt 12710827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 258
Target Start/End: Complemental strand, 46625403 - 46625166
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||||||| ||||||||||| || | | | ||||||||||||||||  | ||||||||||| || |||||| ||||| ||||||||| |||| | | |     
T  46625403 tctgtaagcaggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactctttgaa-ttttgtttcgtgcactagggaatcctt 46625305  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 218  Q
    ||||||||| ||||||||||| || ||||||||| ||||| ||||| | | |  |||||||||  ||||   |||| || |||||||||||   ||||||    
T  46625304 ttgagcattttaaaatgtttctttcaacttgtatgaccctggtatatgca-ctaaatcctactgaaacacattggtaattgaattggttgaatatagtga 46625206  T
Q  219 atttttgagatgattgagtatgaaatcaagtgaatatata 258  Q
    |||||  | |||||||||||||||| ||| ||||||||||    
T  46625205 attttgaatatgattgagtatgaaaccaaatgaatatata 46625166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 13006818 - 13006706
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  13006818 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 13006720  T
Q  116 ttcttgagcattct 129  Q
    ||||||||| ||||    
T  13006719 ttcttgagcgttct 13006706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 13678906 - 13678649
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  13678906 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 13678809  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 217  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  13678808 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 13678710  T
Q  218 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  13678709 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 13678649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 13742803 - 13742729
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||| || || | ||||||||||||||||||    
T  13742803 attgatgtatgagcataattataaataattgtgtatgttctggattgtttgagttgt-ggagtagtaagtcatatg 13742729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 16676766 - 16676623
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 119  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |    
T  16676766 ctgtaagccggtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttt 16676668  T
Q  120 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  16676667 tgagcattgaaacatggttccttcaacttgtataacccttatata 16676623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 17651002 - 17650859
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttct 119  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| |||||||||   |||| |||||||  |||||| | | |    
T  17651002 ctgtaagccggtcgcttaagcgaactagtcgtcgcttaagcgaagttgaccttagtcagccactttttgaa-cgttgcctcgtgcattaggggacccttt 17650904  T
Q  120 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||||||||  || ||| |||||| |||||||||||||||| ||||    
T  17650903 tgagcattgaaacatggttccttcaacttgtataacccttatata 17650859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 12591318 - 12591377
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagc 80  Q
    |||||||| ||||||||||| |||||| | |||||||||||||||||| |||||||||||    
T  12591318 ctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttagtcagc 12591377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 13006604 - 13006532
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatat 347  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | |||||||||||||||||    
T  13006604 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatat 13006532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 14320243 - 14320315
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    |||||| ||||||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||    
T  14320243 ttctgtgagccggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa 14320315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 18607339 - 18607248
Alignment:
Q  225 gagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 316  Q
    ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| |||||||    
T  18607339 gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtattttctgga 18607248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 147556 - 147453
Alignment:
Q  212 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 311  Q
    |||||||||||  ||||||||||||||||||| |||||||| || || | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  147556 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatgtactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 147458  T
Q  312 ctgga 316  Q
    |||||    
T  147457 ctgga 147453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 114
Target Start/End: Original strand, 11383462 - 11383554
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 114  Q
    |||| |||| |||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  11383462 ctgtgagcctgtcgcttaagcgagctagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactagggga 11383554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Complemental strand, 16090535 - 16090457
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    ||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  16090535 cagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 16090457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 316
Target Start/End: Original strand, 16475929 - 16475983
Alignment:
Q  262 tattgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgga 316  Q
    ||||||||||| | |||||||| |||| ||||| ||||||||||||| |||||||    
T  16475929 tattgaatgaactcgatgtatgagcatgattatgattaattgtgtattttctgga 16475983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 13318051 - 13318007
Alignment:
Q  277 atgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    ||||||| |||||||||| ||||||||||||  ||||||||||||    
T  13318051 atgtatgcgcataattatgattaattgtgtaatttctggattgtt 13318007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 568 - 324
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| ||||||||||| |||||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  568 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctgaactattacttagtgcatgaggg 470  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| | |||||||| ||||||||||  ||||| | |||| ||| |||    
T  469 gacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtaaccgaatcctattagaacaagccagtgattggattgattggtgt 370  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 258  Q
    |||| ||| || |||||||| | |||||||| ||||||||||||||    
T  369 tagtaaatgttggagatgatggtgtatgaaaacaagtgaatatata 324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 269 - 221
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  269 attgatgtgtgtgcataattataaataattgtgtatgttctggattgtt 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 258
Target Start/End: Original strand, 8046499 - 8046744
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| || ||||  ||||||||||| || |||   |||||||||||||||||||||||||||||||| ||| |||| | || ||| ||||| |||||    
T  8046499 cagacctactataagttggtcgcttaagcgagctagacgtcgcttaagcgaagtgagccttagtcagcctttttctgaactgttacttagtgcatgaggg 8046598  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||| ||  |   |||||||| |||||||||| || |||||| | |||||||| |||||||||| || ||| | |||| ||| |||    
T  8046599 gacttcttgagcattctataacttcctctttaactagtataaccctggtgtaggtaaccgaatcctattagaacaagccggcgattggattgattggtgt 8046698  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 258  Q
    |||| ||| || |||||||||| |||||||| ||||||||||||||    
T  8046699 tagtaaatgttggagatgattgtgtatgaaaacaagtgaatatata 8046744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 14555881 - 14555938
Alignment:
Q  264 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14555881 ttgaatgaaattgatgtatgagcataattataattaattgtgtttgttctggattgtt 14555938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 170
Target Start/End: Complemental strand, 11847537 - 11847397
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 128  Q
    ||||||||||| |||||| | |||||||||||||  ||||||||||||||||||||| ||||  ||||||| |||||| |||||| | | ||||| |||     
T  11847537 ggtcgcttaagcgaactacccgtcgcttaagcgagctgagccttagtcagcctctttctgaa-ctttgctttgtgcactaggggacccttttgagtattt 11847439  T
Q  129 taaaatgtttcctttaacttgtataacccttgtataggtatc 170  Q
      || |||||| | || |||||||||| ||||||||||||||    
T  11847438 gtaagtgtttcttctagcttgtataactcttgtataggtatc 11847397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 14486037 - 14485975
Alignment:
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctacta 182  Q
    ||||||||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||    
T  14486037 ttgagcattctaaaatgtttctttcagcttgtataacccttgtataggtatca-aatcctacta 14485975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 8834297 - 8834185
Alignment:
Q  52 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 150  Q
    ||||||||||||||   | ||||||||||| |||||||| |||||||||| ||||| || | | | | |||||| |||||||||||||| || |||||||    
T  8834297 tcgcttaagcgaagaaggtcttagtcagccactttttga-tttttgcttcatgcactagagaatccttttgagcgttctaaaatgtttctttcaacttgt 8834199  T
Q  151 ataacccttgtata 164  Q
    |||||| |||||||    
T  8834198 ataacctttgtata 8834185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 14486113 - 14486052
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 81  Q
    ||||||||||||||||||||| || | | |  ||||||||||||||||||||||||||||||    
T  14486113 tctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttagtcagcc 14486052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 82
Target Start/End: Complemental strand, 53483083 - 53483022
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 82  Q
    |||||||| ||||||||||| |||||  | |||||||||||||||||| |||||||||||||    
T  53483083 ctgtaagctggtcgcttaagcgaacttgccgtcgcttaagcgaagtgaaccttagtcagcct 53483022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 15244658 - 15244566
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||||||||||||||||| ||   | | ||||||||| |||||   | ||||||||||| ||||||||| ||||||||||||||| ||||    
T  15244658 tctgtaagccggtcgcttaagcgagtcaaccgtcgcttaatcgaagaaggtcttagtcagccactttttgaaattttgcttcgtgcactaggg 15244566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 313
Target Start/End: Complemental strand, 18212623 - 18212523
Alignment:
Q  212 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 311  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| |||||| ||  |  | ||||| ||||||||||||| ||    
T  18212623 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatgcattagtttgattatgattaattgtgtatttt 18212525  T
Q  312 ct 313  Q
    ||    
T  18212524 ct 18212523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 27905675 - 27905613
Alignment:
Q  52 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    ||||||||||||  ||||||| |||||||| |||| |||||||||||||||||||  |||||||    
T  27905675 tcgcttaagcgagctgagcct-agtcagccactttctgaatttttgcttcgtgcattaggggac 27905613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 15307563 - 15307415
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    |||||||| |||||||||||| || | | |  ||||||||||||||   | ||||||||||| ||||| |||  |||||||||||||| |||| | | |     
T  15307563 tctgtaagtcggtcgcttaagcgagccagccatcgcttaagcgaagaaggtcttagtcagccacttttcgaaactttgcttcgtgcactagggaatcctt 15307464  T
Q  119 ttgagcattctaaaatgtttccttt---aacttgtataacccttgtata 164  Q
    | ||||||| ||||||||||  |||   ||||||||||||| |||||||    
T  15307463 tcgagcattttaaaatgttttttttttcaacttgtataacctttgtata 15307415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 16147436 - 16147514
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    ||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  16147436 cagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 16147514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 318
Target Start/End: Original strand, 8046777 - 8046822
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggatt 318  Q
    |||||||| ||||||||||||||| |||||||||||| | ||||||    
T  8046777 attgatgtgtgtgcataattataaataattgtgtatgatttggatt 8046822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 13887228 - 13887086
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | ||||||| ||||||||||||||| |||| | | |     
T  13887228 tctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttgaa-ttttgcttcgtgcactagggaatcctt 13887131  T
Q  119 ttgagcattct-aaaatgtttcctttaacttgtataacccttgta 162  Q
    |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13887130 ttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 162
Target Start/End: Complemental strand, 13888085 - 13887943
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||||||||||||| ||||| || | | | |||||||||||||||   | |||||| |||| | ||||||| ||||||||||||||| |||| | | |     
T  13888085 tctgtaagccggtcgtttaagcgagccagccgtcgcttaagcgaagaaggtcttagttagccac-ttttgaa-ttttgcttcgtgcactagggaatcctt 13887988  T
Q  119 ttgagcattct-aaaatgtttcctttaacttgtataacccttgta 162  Q
    |||| |||| | |||||||||| || ||||||||||||| |||||    
T  13887987 ttgaacattttaaaaatgtttctttcaacttgtataacctttgta 13887943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 30344 - 30194
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact-t 117  Q
    |||||||||||||||||||||| || | | |  |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||  |    
T  30344 ttctgtaagccggtcgcttaagcgagccaaccttcgcttaagcgaagtgagccttagtcagccactttctgaatttt-gcttcgtgcactaggggaccct 30246  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtat 169  Q
     ||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  30245 tttgagcattctaaaatgtttctttcaacttgtataacccttgtataggtat 30194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 81826 - 82082
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    |||||||| |||||||||||| || | | | ||||||||||||||||  | ||||||||||| ||||||||| ||||||||||| ||| |||| | | |     
T  81826 tctgtaagtcggtcgcttaagcgagccagccgtcgcttaagcgaagtaggtcttagtcagccactttttgaa-ttttgcttcgtacaccagggaatcctt 81924  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 218  Q
    ||||||||| ||||||||||| || ||||||||||||||||||||| | | | ||||||||||  ||||   ||||  |||||||||||||  |||||||    
T  81925 ttgagcattttaaaatgtttctttcaacttgtataacccttgtatatgca-ctgaatcctacttaaacacattggtagtcgaattggttgaatttagtga 82023  T
Q  219 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattga 277  Q
    ||||| || ||| |||||||||||| |||||||||||||| | | ||||||||| ||||    
T  82024 attttggatatgtttgagtatgaaaccaagtgaatatatattatgttgaatgaacttga 82082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 91
Target Start/End: Original strand, 80096 - 80174
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    ||||||| |||||||  ||||||||||| || ||| | |||||||||||||| ||||  ||||||||||| ||| ||||    
T  80096 cagacctactgtaagatggtcgcttaagcgagctagccgtcgcttaagcgaactgagtgttagtcagcctttttctgaa 80174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 20 - 304
Target Start/End: Complemental strand, 65548 - 65265
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||||||||||||||||||| |||| | | ||| |||||||| ||    |||||||||||| ||||||||||||| || |||||||| |||||| | |     
T  65548 tctgtaagccggtcgcttaagcgaaccagccgtcacttaagcggagaagaccttagtcagccactttttgaatttt-gcctcgtgcactaggggatcctt 65450  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtga 218  Q
    |||| |||| ||||||||||| || ||||||||||||  || |||| | | | ||||||||||| ||||   |||| |||||||||||| |  |||||||    
T  65449 ttgaacattttaaaatgtttctttcaacttgtataacttttatatatgca-ctgaatcctactaaaacacattggtaatcgaattggttaagtttagtga 65351  T
Q  219 atttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgt 304  Q
    ||||| ||  ||||||||||||||| |||||||||||||| | | ||||||||| |||||| ||  | || ||||| |||||||||    
T  65350 attttggatttgattgagtatgaaaccaagtgaatatatactatgttgaatgaacttgatgcattagtatgattattattaattgt 65265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 1336 - 1274
Alignment:
Q  196 atcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaagtgaatatata 258  Q
    ||||||||||||||  ||||||| |||| || |||||||||||||||| |||||||| |||||    
T  1336 atcgaattggttgaatttagtgagttttggatatgattgagtatgaaaccaagtgaacatata 1274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 321
Target Start/End: Complemental strand, 23866002 - 23865684
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| |||| | || ||| ||||| |||||    
T  23866002 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcctttttctgaactattacttagtgcatgaggg 23865903  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||| ||  |   |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||| | |||| ||| | |    
T  23865902 gacttcttgagcattctataacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgattggattgattggtat 23865803  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaata----------tataatttattgaatgaaattgatgtatgtgcataattataattaatt 302  Q
    |||| ||| || |   |||||| ||||| ||  |||||||||          |||||  |   |||||  |||||||||||||||||||||||| |||||    
T  23865802 tagtaaatgttggtattgattgtgtatgtaaataagtgaatacgtgtatatgtataacatgaggaatgtgattgatgtatgtgcataattataaataatt 23865703  T
Q  303 gtgtatgttctggattgtt 321  Q
    |||||||||||| ||||||    
T  23865702 gtgtatgttctgaattgtt 23865684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 264 - 319
Target Start/End: Original strand, 19987990 - 19988045
Alignment:
Q  264 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattg 319  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  19987990 ttgaatgaaattgatgtatgagcataattgtaattaattgtgtatgttctggattg 19988045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 18613664 - 18613409
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    ||||||||| ||||||||||| |||| | | ||||||||||||||| ||| |||||||| ||| | |||||||  ||||| |||||||| |||||| | |    
T  18613664 tctgtaagcaggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcggccac-ttttgaa-ctttgcctcgtgcactaggggatcct 18613568  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 217  Q
    ||||||||||  |||||||| | || ||||||||||||| || ||||   | | |||||||||| |||  |  |||| |||||||| |||||  ||||||    
T  18613567 cttgagcatttaaaaatgttcctttcaacttgtataacctttatatataca-ctgaatcctact-gaaacacttggtaatcgaattagttgagtttagtg 18613470  T
Q  218 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    || ||| ||||||||||||||||||| || ||||| ||||| |   ||||||||| ||||||    
T  18613469 aa-tttggagatgattgagtatgaaaccatgtgaacatatactacgttgaatgaacttgatg 18613409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 320
Target Start/End: Original strand, 19902808 - 19902855
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgt 320  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  19902808 attgatgtatgtgcatgattataaataattgtgtatgttctggattgt 19902855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 21931162 - 21931018
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttag-tcagcctctttttgaatttttgcttcgtgcacgagggga--ct 116  Q
    |||||||| ||||||||||||||||| | |  ||||||||||||||   ||||| | |||||| ||||||||  ||||||||| | ||| |||| |  |     
T  21931162 tctgtaagtcggtcgcttaagtgaaccagccttcgcttaagcgaagaaggcctttggtcagccactttttga--ttttgcttcctccactagggaatcca 21931065  T
Q  117 tcttgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||| ||||||||||||||||||| || ||||||||||||| |||||||    
T  21931064 tct-gagcattctaaaatgtttctttcaacttgtataacctttgtata 21931018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 24321276 - 24321376
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  24321276 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 24321373  T
Q  113 gac 115  Q
    |||    
T  24321374 gac 24321376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 265 - 315
Target Start/End: Original strand, 20005423 - 20005473
Alignment:
Q  265 tgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctgg 315  Q
    |||||||| ||||||||||||||| ||||| ||| ||||||||| ||||||    
T  20005423 tgaatgaacttgatgtatgtgcatgattatgattgattgtgtattttctgg 20005473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 14057219 - 14057271
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 65  Q
    ||||| |||||| ||||||||||||||| || ||| | |||||||||||||||    
T  14057219 cagactttctgtgagccggtcgcttaagcgagctagccgtcgcttaagcgaag 14057271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 116309 - 116052
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| ||||||||||||  |||||||| ||| || |||||||| |||||| | |    
T  116309 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccattttttgaacttt-gcctcgtgcactaggggatcct 116212  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 217  Q
     ||||| ||| ||||||||||| || ||| ||||||||| || ||||   | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  116211 tttgagtattttaaaatgtttctttcaacctgtataacctttatatacaca-ctgaatcctactgaaacaccttggtaatcgaattagttgagtttagtg 116113  T
Q  218 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    |||||| |||||||||||||||||||||||||||| ||||| | | ||||||||| ||||||    
T  116112 aatttt-gagatgattgagtatgaaatcaagtgaacatatactatgttgaatgaacttgatg 116052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 129247 - 129393
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    |||||| ||||||||||||||| || | | | |||||||||||||||   | ||||||||||| ||||||||| ||||||||||||||| |||||| | |    
T  129247 ttctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagaaggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcct 129345  T
Q  118 cttgagca-ttctaaaatgtttcctttaacttgtataacccttgtata 164  Q
     ||||||| || | |||||||||||| ||||||||||||| |||||||    
T  129346 tttgagcatttttgaaatgtttccttcaacttgtataacctttgtata 129393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 13 - 320
Target Start/End: Original strand, 9243 - 9559
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||  ||||||||||| || ||| | ||||||||||||||||||| |||||||||||| ||| | || |||| ||| ||||| |||||    
T  9243 cagacctactgtaagttggtcgcttaagcgagctagccgtcgcttaagcgaagtgagtcttagtcagcct-tttctaaacttttacttagtgcatgaggg 9341  T
Q  113 gacttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgt 212  Q
    |||||||||||||||||  ||  |   |||||||| |||||||| | || |||||| ||||| |||| |||||||||| |||||  | |||| |||   |    
T  9342 gacttcttgagcattctgtaacttcctctttaactagtataaccttggtgtaggtagcagaagcctattagaacaagccggtgactggattgattggcat 9441  T
Q  213 tagtgaatttttgagatgattgagtatgaaatcaagtgaata--tata-atttat-------tgaatgaaattgatgtatgtgcataattataattaatt 302  Q
    |||| ||| || | | |||||| ||||||||  |||||||||  |||| || |||       ||||||  |||||||||||||||| ||||||| |||||    
T  9442 tagtaaatgttggtgttgattgtgtatgaaaataagtgaatacgtatatatgtataacatgatgaatgtgattgatgtatgtgcatgattataaataatt 9541  T
Q  303 gtgtatgttctggattgt 320  Q
    || |||||||||||||||    
T  9542 gtatatgttctggattgt 9559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 1261 - 1117
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||| ||||||||||||||| || | | | ||||||||||||||| | | ||||||||||| ||||||||| ||||||||||||||| |||||| | |     
T  1261 tctgtgagccggtcgcttaagcgagccagccgtcgcttaagcgaagagggtcttagtcagccactttttgaa-ttttgcttcgtgcactaggggatcctt 1163  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  1162 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 1117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 23528016 - 23527777
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  23528016 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 23527918  T
Q  116 ttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaat-tggttgatgtta 214  Q
    ||||||||| ||||  ||  |   |||||||| |||||||||| || |||||| |  ||||||| |||||||| | |||| | | || || ||| |||||    
T  23527917 ttcttgagcgttctttaacttcctctttaactagtataaccctggtgtaggtaaccaaatcctattagaacaatccggtgtttggatatgattggtgtta 23527818  T
Q  215 gtgaatttttgagatgattgagtatgaaatcaagtgaatat 255  Q
    || ||| || |||||| ||| || ||||| |||||||||||    
T  23527817 gtaaatgttggagatgtttgggtgtgaaagcaagtgaatat 23527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 22232436 - 22232493
Alignment:
Q  264 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  22232436 ttgaatgaaattgatgtatgagcataattataattaatcgtgtatgttctggattgtt 22232493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 18408553 - 18408685
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcg-aagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggact- 116  Q
    ||||||||||||||||||||||  ||||| | |||||||||||| || ||| |||||||||||| |||||||||  ||||| |||||||| |||||| |     
T  18408553 ttctgtaagccggtcgcttaagcaaactagccgtcgcttaagcgaaaatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggattc 18408650  T
Q  117 tcttgagcattctaaaatgtttcctttaacttgta 151  Q
    | ||||||||| | ||||||| | || ||||||||    
T  18408651 ttttgagcatttttaaatgttcctttcaacttgta 18408685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 34829530 - 34829432
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||| ||||||||||||| ||| ||| ||||  |||||||||||||| |||||||    
T  34829530 accttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcaacctttttctgaa-ctttgcttcgtgcactaggggac 34829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 22460606 - 22460506
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  22460606 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 22460509  T
Q  113 gac 115  Q
    |||    
T  22460508 gac 22460506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 19236350 - 19236294
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgag 69  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||    
T  19236350 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgag 19236294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 20781192 - 20781102
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcac 107  Q
    ||||| ||| ||| ||||||||||| || ||| | |||||||||||||| | ||  ||||||||||| ||| |||| |||||||||||||||    
T  20781192 accttgtgtgagctggtcgcttaagcgagctacccgtcgcttaagcgaactaagtgttagtcagcctttttctgaa-ttttgcttcgtgcac 20781102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 279
Target Start/End: Original strand, 23112480 - 23112546
Alignment:
Q  212 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  23112480 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 23112546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 23527747 - 23527674
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||||||||||||||||||||||| |||||||||  | |||||||| || || || | ||||||||||||||||||    
T  23527747 attgatgtatgtgcataattataaataattgtgtcag-tctggattatttgagttgt-ggagtagtaagtcatatg 23527674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 20819488 - 20819456
Alignment:
Q  134 tgtttcctttaacttgtataacccttgtatagg 166  Q
    ||||||||||| |||||||||||||||||||||    
T  20819488 tgtttcctttagcttgtataacccttgtatagg 20819456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 20826588 - 20826556
Alignment:
Q  134 tgtttcctttaacttgtataacccttgtatagg 166  Q
    ||||||||||| |||||||||||||||||||||    
T  20826588 tgtttcctttagcttgtataacccttgtatagg 20826556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1061 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold1061
Description:

Target: scaffold1061; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 51 - 258
Target Start/End: Complemental strand, 1813 - 1607
Alignment:
Q  51 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 148  Q
    ||||||||||||||| ||| |||||||||||| ||||||||||||| || |||||||| |||||| | | ||||||||| ||||||||||| || |||||    
T  1813 gtcgcttaagcgaagatga-ccttagtcagccactttttgaatttt-gcctcgtgcactaggggatccttttgagcattttaaaatgtttctttcaactt 1716  T
Q  149 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 248  Q
    |||| ||| || ||||     | |||||||||| |||||   |||| ||||| ||||||||  |||||||||||| || || | ||||||||||| ||||    
T  1715 gtatgacctttatatatacccctgaatcctact-gaacacattggtaatcgagttggttgaatttagtgaattttggatatcagtgagtatgaaaccaag 1617  T
Q  249 tgaatatata 258  Q
    ||||||||||    
T  1616 tgaatatata 1607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 799 - 542
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    ||||||||||||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||  |||||| | |    
T  799 tctgtaagccggtcgcttaagcgaaccagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcattaggggatcct 702  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtg 217  Q
     |||||||||  |||||||||| || || |||||||||| || |||| | | | ||||||||||  ||||   |||| |||||||| |||||  ||||||    
T  701 tttgagcattaaaaaatgtttctttcaatttgtataacctttatatatgca-ctgaatcctactgaaacactttggtaatcgaattagttgagtttagtg 603  T
Q  218 aatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    || |||  |||||||||||||| | | |||||||| ||||| | | ||||||||| ||||||    
T  602 aa-tttgaagatgattgagtatcataccaagtgaacatatactatgttgaatgaacttgatg 542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 6e-22; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 20941657 - 20941714
Alignment:
Q  264 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20941657 ttgaatgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 20941714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Complemental strand, 41111326 - 41111214
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||| |||||||| ||||||||||| |||||| | |||||||||||||||||| ||||| ||||||| ||| |||| | |||||| ||||| ||||||||    
T  41111326 acctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagtgaaccttaatcagcct-tttctgaactgttgcttagtgcatgaggggac 41111228  T
Q  116 ttcttgagcattct 129  Q
    ||||||||| ||||    
T  41111227 ttcttgagcgttct 41111214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Complemental strand, 18712193 - 18712098
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 114  Q
    |||||||||| ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| | ||||||| |||||| |||||||| ||||||    
T  18712193 ttctgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccaccttttgaacttttgcctcgtgcactagggga 18712098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 19961622 - 19961472
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 128  Q
    ||||||||||| || ||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||||||||| |||||| | | ||||| |||     
T  19961622 ggtcgcttaagcgagctacccttcgcttaagcgagatgagccttagtcagcctctatctgaa-ctttgcttcgtgcactaggggacccttttgagtattt 19961524  T
Q  129 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 181  Q
    | |  |||||| |||| ||||||||||||||||||||| |||| |||||||||    
T  19961523 ttacgtgtttcttttagcttgtataacccttgtataggcatca-aatcctact 19961472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 22030360 - 22030504
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    |||||||||| |||||||||| || | | |  ||||||||||||||   | ||||||||||| |||||| |||||||||||| ||||| |||  | | |     
T  22030360 tctgtaagccagtcgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccacttttt-aatttttgcttcttgcactaggaaatcctt 22030458  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    |||||||||||| |||||||| || ||||||||||||| |||||||    
T  22030459 ttgagcattctataatgtttctttcaacttgtataacctttgtata 22030504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 41111112 - 41111039
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgttagaattttcggagtagtaagtcatatg 348  Q
    |||||||||||||||||||||||| |||||||||| | ||||||||||| || || | ||||||||||||||||||    
T  41111112 attgatgtatgtgcataattataaataattgtgtaag-tctggattgtttgagttgt-ggagtagtaagtcatatg 41111039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 279
Target Start/End: Complemental strand, 11157554 - 11157328
Alignment:
Q  51 gtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaactt 148  Q
    ||||||||||||||| ||| ||||||||| || ||||||||| ||| || |||||||  |||||| | | |||||||||  |||||||||| || |||||    
T  11157554 gtcgcttaagcgaagatga-ccttagtcaaccactttttgaacttt-gcctcgtgcattaggggatccttttgagcatttaaaaatgtttctttcaactt 11157457  T
Q  149 gtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatttttgagatgattgagtatgaaatcaag 248  Q
    ||||||||||| ||||   | |  |||||||||  ||||   |||| |||||||| || ||  |||||||| |||  |||||||||||||||||| ||||    
T  11157456 gtataacccttatatataca-ctaaatcctactgaaacactttggtaatcgaattagtcgagtttagtgaa-tttgaagatgattgagtatgaaaccaag 11157359  T
Q  249 tgaatatataatttattgaatgaaattgatg 279  Q
    |||| ||||| | | ||||||||| ||||||    
T  11157358 tgaacatatactatgttgaatgaacttgatg 11157328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 20851738 - 20851838
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  20851738 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 20851835  T
Q  113 gac 115  Q
    |||    
T  20851836 gac 20851838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 21705725 - 21705625
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| ||| |||| | ||||||||| ||| ||||    
T  21705725 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct-tttctgaa-tcttgcttcgtacactaggg 21705628  T
Q  113 gac 115  Q
    |||    
T  21705627 gac 21705625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 21710268 - 21710167
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| |||||| |||  ||| | ||||||||| ||| ||||    
T  21710268 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcctttttccgaa-tcttgcttcgtacactaggg 21710170  T
Q  113 gac 115  Q
    |||    
T  21710169 gac 21710167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 20858365 - 20858434
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcct 82  Q
    ||||||| |||||||| ||||||||||| |||||| | |||||||||||||| ||||  |||| ||||||    
T  20858365 cagacctactgtaagctggtcgcttaagcgaactagccgtcgcttaagcgaactgagtgttagacagcct 20858434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 20438224 - 20438327
Alignment:
Q  212 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 311  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| || ||| ||  |  | ||||| ||||||||||||| ||    
T  20438224 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaactttatgcattagtttgattatgattaattgtgtatttt 20438322  T
Q  312 ctgga 316  Q
    |||||    
T  20438323 ctgga 20438327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 264 - 321
Target Start/End: Original strand, 1527 - 1584
Alignment:
Q  264 ttgaatgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  1527 ttgaatgaaattgatgtatgagcataattttaattaattgtgtatgttctggattgtt 1584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 279
Target Start/End: Original strand, 15604 - 15856
Alignment:
Q  24 taagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttg 121  Q
    |||| |||||||||||| |||| | | ||||||||||||||| ||| |||||||||||| ||||| ||| ||| || |||||||| ||| || | | |||    
T  15604 taagacggtcgcttaagcgaaccaaccgtcgcttaagcgaagatga-ccttagtcagccactttt-gaacttt-gcctcgtgcactaggagatccttttg 15700  T
Q  122 agcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagtgaatt 221  Q
    ||||||  |||||||||| || ||||||||||||| || |||| | | | ||||| ||||  ||||   |||| |||||||| |||||  ||||||||||    
T  15701 agcatttaaaaatgtttctttcaacttgtataacctttatatatgca-ctgaatcatactgaaacactttggtaatcgaattagttgagtttagtgaatt 15799  T
Q  222 tttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    |  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  15800 tg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 15856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 17972 - 18024
Alignment:
Q  269 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17972 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 18024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 269 - 321
Target Start/End: Original strand, 23605 - 23657
Alignment:
Q  269 tgaaattgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23605 tgaaattgatgtatgagcataattataattaattgtgtatgttctggattgtt 23657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 493650 - 493800
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattc 128  Q
    ||||||||||| || ||| |  ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| |||     
T  493650 ggtcgcttaagcgagctacccttcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtattt 493748  T
Q  129 taaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 181  Q
    | ||||||||| |||| |||||||||| |||||||||| |||| |||||||||    
T  493749 ttaaatgtttcttttagcttgtataactcttgtataggcatca-aatcctact 493800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 273 - 321
Target Start/End: Original strand, 174440 - 174488
Alignment:
Q  273 attgatgtatgtgcataattataattaattgtgtatgttctggattgtt 321  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  174440 attgatgtatgtgcataattataaataattgtgtatgttctggattgtt 174488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 525205 - 525062
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga--ctt 117  Q
    |||||||| |||||||||||| |||| | |  ||||||||||||||   ||||| ||||||| | ||||||  ||||| ||| ||||| |||| |  | |    
T  525205 tctgtaagacggtcgcttaagcgaaccagccttcgcttaagcgaagaaggccttggtcagccacattttga--ttttgtttcctgcactagggaatccat 525108  T
Q  118 cttgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    || ||||||||| ||||||||| || ||||||||||||| |||||||    
T  525107 ct-gagcattctgaaatgtttctttcaacttgtataacctttgtata 525062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 24178 - 24342
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 114  Q
    ||||| ||| ||| ||||||||||| || |||||  ||||||||||||  |||||||||||||| |||||| ||||  |||||||||||||| ||||||     
T  24178 accttttgtgagctggtcgcttaagcgagctatccttcgcttaagcgagatgagccttagtcagtctctttctgaa-ctttgcttcgtgcactaggggac 24276  T
Q  115 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 181  Q
    | | |||||  || | || |||||| |||| |||||||||||||||| |||| |||| |||||||||    
T  24277 ccttttgagtgtttttaagtgtttcttttagcttgtataacccttgtgtaggcatca-aatcctact 24342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 121344 - 121200
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||| ||||||||||| |||| | | |     
T  121344 tctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgactttt-gcttcgtgcactagggaatcctt 121246  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  121245 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 121200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 132221 - 132077
Alignment:
Q  20 tctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttc 118  Q
    ||||||||||||| ||||||| || | | |  ||||||||||||||   | ||||||||||| |||||||| |||| ||||||||||| |||| | | |     
T  132221 tctgtaagccggttgcttaagcgagccagccttcgcttaagcgaagaaggtcttagtcagccactttttgactttt-gcttcgtgcactagggaatcctt 132123  T
Q  119 ttgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    ||||||||| ||||||||||| || ||||||||||||| |||||||    
T  132122 ttgagcattttaaaatgtttctttcaacttgtataacctttgtata 132077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 658 - 752
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 114  Q
    |||||||||||||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  658 ttctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 114
Target Start/End: Original strand, 7605 - 7688
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 114  Q
    ||||||||||| |||||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  7605 ggtcgcttaagcgaactagccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcgtcgtgcactagggga 7688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0232 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0232
Description:

Target: scaffold0232; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 164
Target Start/End: Original strand, 19059 - 19166
Alignment:
Q  57 taagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgtataac 155  Q
    ||||||||| | | ||||||||||| ||||||||||||| ||||||||||| |||||| | | ||||||||| ||||||||||| || ||||| ||||||    
T  19059 taagcgaagagggtcttagtcagccactttttgaatttt-gcttcgtgcactaggggatccttttgagcattttaaaatgtttctttcaacttatataac 19157  T
Q  156 ccttgtata 164  Q
    | |||||||    
T  19158 ctttgtata 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 17611 - 17492
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ctt 117  Q
    |||||||||||||||||||||| || | | |  |||||||||||||||||||||| ||||||| |||| |||| ||||| ||||||||| ||| || | |    
T  17611 ttctgtaagccggtcgcttaagcgagccagccttcgcttaagcgaagtgagccttggtcagccactttctgaa-ttttgtttcgtgcactaggcgagcct 17513  T
Q  118 cttgagcattctaaaatgttt 138  Q
     ||||||||||||||| ||||    
T  17512 tttgagcattctaaaaggttt 17492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 16215 - 16083
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ct 116  Q
    |||||||||||||||||||||| || ||| | ||||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| |||||| |     
T  16215 ttctgtaagccggtcgcttaagcgagctaaccgtcgcttaagcgaagatga-ccttagtcagccactttttgaa-ctttgcctcgtgcactaggggatcc 16118  T
Q  117 tcttgagcattctaaaatgtttcctttaacttgta 151  Q
    | ||||||||| | ||||||| | || ||||||||    
T  16117 ttttgagcatttttaaatgttcctttcaacttgta 16083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 4277 - 4377
Alignment:
Q  13 cagaccttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggg 112  Q
    ||||||| |||||||| ||||||||||| |||||| |  ||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| ||||    
T  4277 cagacctactgtaagctggtcgcttaagcgaactagccatcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggg 4374  T
Q  113 gac 115  Q
    |||    
T  4375 gac 4377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 15061 - 15121
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcc 81  Q
    |||||||||||||||||||| |||||| | |||||||||||||||||  ||||||||||||    
T  15061 ctgtaagccggtcgcttaagcgaactagccgtcgcttaagcgaagtggaccttagtcagcc 15121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 3905 - 3975
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    |||||||||||||||||||| ||||||   ||||||||||||||||   |||||||||||| |||||||||    
T  3905 ctgtaagccggtcgcttaagcgaactagacgtcgcttaagcgaagttgaccttagtcagccactttttgaa 3975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 51657 - 51552
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttg 149  Q
    |||||||||||||||   | ||||||||||| ||||||||||||| |||| |||||| |||| | | | ||||||||| ||||||||||| || ||||||    
T  51657 gtcgcttaagcgaagaaggtcttagtcagccactttttgaatttt-gctttgtgcactagggaatccttttgagcattttaaaatgtttctttcaacttg 51559  T
Q  150 tataacc 156  Q
    |||||||    
T  51558 tataacc 51552  T

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Target: scaffold0034 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 72729 - 72565
Alignment:
Q  16 accttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga- 114  Q
    ||||| ||| ||| ||||||||||| || ||| |  ||||||||||||  ||||||| |||||||| |||| |||||||||||||||||||  ||||||     
T  72729 accttttgtgagctggtcgcttaagcgagctacccttcgcttaagcgagctgagcct-agtcagccactttctgaatttttgcttcgtgcattaggggac 72631  T
Q  115 cttcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 181  Q
    | | || || ||  |||| |||| | |||| ||| ||||||||||||||| |||||| |||||||||    
T  72630 cctttttagtatcttaaagtgttccttttagcttatataacccttgtataagtatca-aatcctact 72565  T

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Target: scaffold0483 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 181
Target Start/End: Original strand, 11631 - 11782
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagca-tt 127  Q
    ||||||||||| |||||| |  ||||||||||||  ||||||||||||||||||| | ||||  |||||||| ||||| |||||| | | ||||| | ||    
T  11631 ggtcgcttaagcgaactacccttcgcttaagcgagctgagccttagtcagcctctatctgaa-ctttgcttcatgcactaggggacccttttgagtattt 11729  T
Q  128 ctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctact 181  Q
     | || | |||| |||| ||||||||||||||||||||| |||| |||||||||    
T  11730 tttaagtttttcttttagcttgtataacccttgtataggcatca-aatcctact 11782  T

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Target: scaffold0124 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 34938 - 35010
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaa 91  Q
    |||||||||||||||||||||| |||||| |  |||||||||||||| ||| |||||||||||| |||||||||    
T  34938 ttctgtaagccggtcgcttaagcgaactagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa 35010  T

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Target: scaffold0337 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 9950 - 10053
Alignment:
Q  212 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatgtatgtgcataattataattaattgtgtatgtt 311  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | || |||||| |||||| ||  |  | ||||||||||||||||||| ||    
T  9950 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgtttaatgaacttgatgcattagtttgattataattaattgtgtatttt 10048  T
Q  312 ctgga 316  Q
    |||||    
T  10049 ctgga 10053  T

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Target: scaffold0247 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 10753 - 10610
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggacttctt 120  Q
    |||||||||||||||||||| || ||| | ||||||||||||||||    ||||||||||| |||||||||  ||||| |||||||  ||||||   |||    
T  10753 ctgtaagccggtcgcttaagcgagctagccgtcgcttaagcgaagttgatcttagtcagccactttttgaa-ctttgcctcgtgcattaggggatccctt 10655  T
Q  121 g-agcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    | ||||||  || ||||  | ||||||||||||||||||| ||||    
T  10654 gtagcatttaaacatgtcccttttaacttgtataacccttatata 10610  T

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Target: scaffold0453 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 11196 - 11324
Alignment:
Q  52 tcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-cttcttgagcattctaaaatgtttcctttaacttgt 150  Q
    ||||||||||||| ||||||||||||||||| ||| ||||   ||||||||||||| |||||| | | ||||| | | | || |||||  |||| |||||    
T  11196 tcgcttaagcgaactgagccttagtcagcctttttctgaa-ccttgcttcgtgcactaggggacccttttgagtacttttaagtgtttattttagcttgt 11294  T
Q  151 ataacccttgtataggtatcagaatcctact 181  Q
    ||||| |||||||||| |||| |||||||||    
T  11295 ataactcttgtataggcatca-aatcctact 11324  T

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Target: scaffold0020 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 279
Target Start/End: Original strand, 102529 - 102787
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga-ct 116  Q
    ||||||||| |||||||||||| |||| | |  |||||||||||||| ||| |||||||| ||| |||||||||  || || |||||||| |||||| |     
T  102529 ttctgtaagtcggtcgcttaagcgaaccagccatcgcttaagcgaagatga-ccttagtcggccactttttgaacctt-gcctcgtgcactaggggatcc 102626  T
Q  117 tcttgagcattctaaaatgtttcctttaacttgtataacccttgtataggtatcagaatcctactagaacaagctggtgatcgaattggttgatgttagt 216  Q
    | ||||| ||| ||||| ||||| || ||| ||||||||| || ||||   | | || ||||||   ||||   |||| |||||||| |||||  |||||    
T  102627 ttttgagtattttaaaaggtttctttcaacctgtataacctttatatacaca-ctgagtcctacagaaacaccttggtaatcgaattagttgagtttagt 102725  T
Q  217 gaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
     |||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  102726 aaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 102787  T

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Target: scaffold0720 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 115
Target Start/End: Original strand, 3882 - 3966
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    ||||||||||| || ||| |  ||||||||||||| ||||| ||||||||||| ||||||||   ||||||||||||| |||||||    
T  3882 ggtcgcttaagcgagctacccttcgcttaagcgaactgagcattagtcagcctttttttgaa-ccttgcttcgtgcactaggggac 3966  T

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Target: scaffold0206 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 18121 - 18060
Alignment:
Q  30 ggtcgcttaagtgaactatctgtcgcttaagcgaagtgagccttagtcagcctctttttgaa 91  Q
    ||||||||||| || ||| || ||||||||||||| ||||||||||||||||| ||| ||||    
T  18121 ggtcgcttaagcgagctacctttcgcttaagcgaactgagccttagtcagcctttttctgaa 18060  T

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Target: scaffold0235 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 15539 - 15633
Alignment:
Q  19 ttctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag-tgagccttagtcagcctctttttgaatttttgcttcgtgcacgagggga 114  Q
    |||||| |||| ||||||||||||| ||| |  |||||||||||||| ||| |||||||||||| |||||||||  ||||| |||||||| ||||||    
T  15539 ttctgtgagccagtcgcttaagtgagctagccatcgcttaagcgaagatga-ccttagtcagccactttttgaa-atttgcctcgtgcactagggga 15633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 164
Target Start/End: Complemental strand, 6343 - 6299
Alignment:
Q  120 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    |||||||||||||||||||| || ||||||||||||| |||||||    
T  6343 tgagcattctaaaatgtttctttcaacttgtataacctttgtata 6299  T

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Target: scaffold1427 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold1427
Description:

Target: scaffold1427; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 279
Target Start/End: Complemental strand, 1273 - 1207
Alignment:
Q  212 ttagtgaatttttgagatgattgagtatgaaatcaagtgaatatataatttattgaatgaaattgatg 279  Q
    |||||||||||  ||||||||||||||||||| |||||||| ||||| | | ||||||||| ||||||    
T  1273 ttagtgaatttg-gagatgattgagtatgaaaccaagtgaacatatactatgttgaatgaacttgatg 1207  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 3328 - 3372
Alignment:
Q  120 tgagcattctaaaatgtttcctttaacttgtataacccttgtata 164  Q
    |||||||||| ||||||||| || ||||||||||||| |||||||    
T  3328 tgagcattctgaaatgtttctttcaacttgtataacctttgtata 3372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 6951 - 6907
Alignment:
Q  21 ctgtaagccggtcgcttaagtgaactatctgtcgcttaagcgaag 65  Q
    |||||||||||||||||||| || ||| | |||||||||||||||    
T  6951 ctgtaagccggtcgcttaagcgagctagccgtcgcttaagcgaag 6907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 134882 - 134820
Alignment:
Q  51 gtcgcttaagcgaagtgagccttagtcagcctctttttgaatttttgcttcgtgcacgaggggac 115  Q
    |||||||||||||| ||||| ||||||||||| ||| |||| | ||||||||||||| |||||||    
T  134882 gtcgcttaagcgaactgagcgttagtcagcct-tttctgaa-tcttgcttcgtgcactaggggac 134820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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