View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18114_low_14 (Length: 332)
Name: NF18114_low_14
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 47267494 - 47267797
Alignment:
| Q |
19 |
cctagttcatcaatctttcttctttaggacttcagacatagttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatc |
118 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47267494 |
cctagttcatcaatctttcttctttaggacttcagacattgttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatc |
47267593 |
T |
|
| Q |
119 |
acttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
47267594 |
acttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtattgtcaatgcacgttcgaggtttaatg |
47267693 |
T |
|
| Q |
219 |
ctaacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttattc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
47267694 |
ctaacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttatgc |
47267793 |
T |
|
| Q |
319 |
tgtg |
322 |
Q |
| |
|
|||| |
|
|
| T |
47267794 |
tgtg |
47267797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 47299360 - 47299064
Alignment:
| Q |
20 |
ctagttcatcaatctttcttctttaggacttcagacatagttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatca |
119 |
Q |
| |
|
||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||| || || |||||||||||||||||| |
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| T |
47299360 |
ctagtccatcaatctttcttctttagagcttctgacatagccacacttcgtctcttggttccatttcaccttcgtcaatgcaccacattcgatcttatcg |
47299261 |
T |
|
| Q |
120 |
cttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||| ||||||||| ||||||||||||| |
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| T |
47299260 |
cttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgaagaggtacgaatgatgtgcatcgccaatgcacgctcgaggtttaatgt |
47299161 |
T |
|
| Q |
220 |
taacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttat |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |||||| |
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| T |
47299160 |
taacaattcgccacttgttggatactacggtaactgttttgcttacccagcggccgtcaccactgcaaggaagctttgtggaaacccatttggttat |
47299064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 47292753 - 47292457
Alignment:
| Q |
20 |
ctagttcatcaatctttcttctttaggacttcagacatagttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatca |
119 |
Q |
| |
|
|||||||||| ||||||||||||||| |||| ||||||| || |||||||||||||||||||||||||||||| || || |||||||| ||||||||| |
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| T |
47292753 |
ctagttcatcgatctttcttctttagagcttctgacatagctgcgcttcgtctcttggttccatttcaccttcgtcaatgcaccacatttgatcttatcg |
47292654 |
T |
|
| Q |
120 |
cttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||| ||||||||||||| ||||||||||| |
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| T |
47292653 |
cttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcggataaagaggtacgaatgatgtgcgtcgtcaatgcacgctcgaggtttaacat |
47292554 |
T |
|
| Q |
220 |
taacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttat |
316 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
47292553 |
taacaattcgccacttgttggatattacggtaactgttttgcttacccagcggccgtcaccactgcagggaagctttgtggaaatccatttggttat |
47292457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 68 - 316
Target Start/End: Original strand, 47283508 - 47283756
Alignment:
| Q |
68 |
cgtctcttggttccatttcaccttcgccattgtaccacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcag |
167 |
Q |
| |
|
|||| |||| |||||||||||||||| || || | ||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
47283508 |
cgtcacttgattccatttcaccttcgtcaatgcagtacatttgatcttatcaccgcatgtttttggtgttgccgcacaaaagcattgcagttagagccag |
47283607 |
T |
|
| Q |
168 |
atgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattcgccacttgttggatactacggtaattgttttgcttaccc |
267 |
Q |
| |
|
|||| || ||||||||||||| ||||| ||||||||||| ||||||| ||| || ||||||||||||||||||| || ||||| |||||||||| ||| |
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| T |
47283608 |
atgaagaagtacgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgaccattcgccacttgttggatattatggtaactgttttgctttccc |
47283707 |
T |
|
| Q |
268 |
ggcggccgtcaccactgcagggaagctttgtggaaactcattaggttat |
316 |
Q |
| |
|
||| || |||||||| ||||||||||||||||||||| | ||||||||| |
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|
| T |
47283708 |
ggctgctgtcaccaccgcagggaagctttgtggaaaccctttaggttat |
47283756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 78 - 316
Target Start/End: Original strand, 47278925 - 47279163
Alignment:
| Q |
78 |
ttccatttcaccttcgccattgtaccacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagat |
177 |
Q |
| |
|
|||||||||||||||| || || | ||||| ||||||||||| |||||||||||||||| || ||||||||||||||||||||| ||||||| || | |
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| T |
47278925 |
ttccatttcaccttcgtcaatgcagtacatttgatcttatcaccgcatgtttttggtgttgccgtacaaaagcattgcagttagagccagatgaagaagt |
47279024 |
T |
|
| Q |
178 |
acgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtc |
277 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| ||||||| ||| || ||||||||||||||||||| || ||||| |||||||||| |||||| || ||| |
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|
| T |
47279025 |
acgaatgatgtgcatcgttaatgcacgttcaaggtttagggctgaccattcgccacttgttggatattatggtaactgttttgctttcccggctgctgtc |
47279124 |
T |
|
| Q |
278 |
accactgcagggaagctttgtggaaactcattaggttat |
316 |
Q |
| |
|
||||| |||||||||||||||||||| | ||||||||| |
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|
| T |
47279125 |
accaccgcagggaagctttgtggaaatcctttaggttat |
47279163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 316
Target Start/End: Original strand, 47242588 - 47242887
Alignment:
| Q |
21 |
tagttcatcaatctttcttctttaggacttcagacatagttgtgcttcgtctcttggttccatttcaccttcgccattgtaccacattc----gatctta |
116 |
Q |
| |
|
|||| ||||||||||||||||| | || | |||||| |||| ||||| |||||||||| ||||||||| ||||| || ||||| ||||||| |
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|
| T |
47242588 |
tagtccatcaatctttcttcttcacacctgctcacatagctgtgattcgttgcttggttccaattcaccttcatcattgcactacattaatttgatctta |
47242687 |
T |
|
| Q |
117 |
tcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaa |
216 |
Q |
| |
|
||||| ||| || |||||| || |||||||||||||||||| ||||| ||||||| ||| ||||||||||||| ||||| ||||||||||| ||||||| |
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|
| T |
47242688 |
tcactgcatattattggtgctgccgcacaaaagcattgcagatagagccagatgaagaggtacgaatgatgtgcatcgttaatgcacgttccaggtttag |
47242787 |
T |
|
| Q |
217 |
tgctaacaattcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaactcattaggttat |
316 |
Q |
| |
|
||||||| ||| |||||||||| ||||||||||| |||||| | ||||||| |||||||| ||| | |||||||||||||| |||||||||| |
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|
| T |
47242788 |
tgctaacccttctttgtttgttggatattacggtaattgcattgctttctcggcggctgtcaccaccgcaaaggagctttgtggaaaccaattaggttat |
47242887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 109 - 316
Target Start/End: Original strand, 47256804 - 47257014
Alignment:
| Q |
109 |
cgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgacgagatacgaatgatgtgtatcgtcaatgcacgttcg |
208 |
Q |
| |
|
||||||||||||| |||||| |||||| || |||||||||||||||||| |||| ||||||| || | ||||||||||| ||||| |||||||| ||| |
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|
| T |
47256804 |
cgatcttatcactgcatgttattggtgctgccgcacaaaagcattgcaggtagaaccagatgaagatgtgcgaatgatgtgcatcgttaatgcacgctcg |
47256903 |
T |
|
| Q |
209 |
aggtttaatgctaacaa---ttcgccacttgttggatactacggtaattgttttgcttacccggcggccgtcaccactgcagggaagctttgtggaaact |
305 |
Q |
| |
|
||||||| |||||| || |||| | || ||||||| || || || ||| |||||| | ||||||| |||||||| ||| | |||||||||||||| |
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|
| T |
47256904 |
aggtttagtgctaataaccgttcgtcgctcattggatattatggcaactgtattgctttctcggcggcagtcaccaccgcaaaggagctttgtggaaacc |
47257003 |
T |
|
| Q |
306 |
cattaggttat |
316 |
Q |
| |
|
|||||||||| |
|
|
| T |
47257004 |
aattaggttat |
47257014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 73 - 316
Target Start/End: Original strand, 32731311 - 32731554
Alignment:
| Q |
73 |
cttggttccatttcaccttcgccattgtaccacattcgatcttatcacttcatgtttttggtgttgtcgcacaaaagcattgcagttagaggcagatgac |
172 |
Q |
| |
|
|||||||||| ||||||||| ||||| || ||||| |||||||||| | |||||| |||||| || |||||||||||||||||| ||||| ||||||| |
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|
| T |
32731311 |
cttggttccaattcaccttcatcattgcactacatttgatcttatcagtgcatgttattggtgctgccgcacaaaagcattgcagatagagccagatgaa |
32731410 |
T |
|
| Q |
173 |
gagatacgaatgatgtgtatcgtcaatgcacgttcgaggtttaatgctaacaattcgccacttgttggatactacggtaattgttttgcttacccggcgg |
272 |
Q |
| |
|
||| ||||||||||||| ||||| ||||||||||| ||||||| ||||||| ||| || ||||||| |||||||||||| |||||| | |||||| |
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|
| T |
32731411 |
gaggtacgaatgatgtgcatcgttaatgcacgttccaggtttagtgctaacccttctttgtttattggatattacggtaattgtattgctttctcggcgg |
32731510 |
T |
|
| Q |
273 |
ccgtcaccactgcagggaagctttgtggaaactcattaggttat |
316 |
Q |
| |
|
| |||||||| ||| | |||||||||||||| |||||||||| |
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|
| T |
32731511 |
ctgtcaccaccgcaaaggagctttgtggaaaccaattaggttat |
32731554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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