View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_low_17 (Length: 237)
Name: NF18114_low_17
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 34122584 - 34122362
Alignment:
| Q |
12 |
catcatcatcgctaagaggctttaagaataatgaagtttgaaacc-gtggaaacttaactctagaagttatcaaaattttataatctggaacttgaacct |
110 |
Q |
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| T |
34122584 |
catcatcatcgctaagaggctttaagaataatgaagtttgaaacccgtggaaacttaactctagaagttatcaaaattttataatctggaacttgaacct |
34122485 |
T |
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| Q |
111 |
tgaaggcattgacaaaggattctgagccttggaaaacattatctagaaccaacatcaatggacgacgattctctccaattttgctgagcaaacatctcaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34122484 |
tgaaggcattgacaaaggattctgagccttggaaaacattatctagaaccaacatcaatggacgacgattctctccaattttgttgagcaaacatctcaa |
34122385 |
T |
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| Q |
211 |
gtttttaaccgcaccatcatggt |
233 |
Q |
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| T |
34122384 |
gtttttaaccgcatcatcatggt |
34122362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 34110820 - 34110612
Alignment:
| Q |
14 |
tcatcatcgctaagaggctttaagaataatgaagtttgaaaccgtggaaacttaactctagaagttatcaaaattttataatctggaacttgaaccttga |
113 |
Q |
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|||||||| || || ||||||||||||| |||| | |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| | |
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| T |
34110820 |
tcatcatctctgagcggctttaagaatagtgaact---aaaccgtggaaactcaactctagaagttatcaaaattttacaatctggaacttgaacctgaa |
34110724 |
T |
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| Q |
114 |
aggcattgacaaaggattctgagccttggaaaacattatctagaaccaacatcaatggacgacgattctctccaattttgctgagcaaacatctcaagtt |
213 |
Q |
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| T |
34110723 |
agtcctcaactaaggattctgagcctgggcaaacattatccagaaccaacatcattggacaac---tttccccaattttggtcagcaaacttctcaagtg |
34110627 |
T |
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| Q |
214 |
tttaaccgcaccatc |
228 |
Q |
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|||||| ||| |||| |
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| T |
34110626 |
tttaactgcatcatc |
34110612 |
T |
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