View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18114_low_2 (Length: 713)

Name: NF18114_low_2
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18114_low_2
NF18114_low_2
[»] chr1 (10 HSPs)
chr1 (161-696)||(16101322-16101860)
chr1 (239-696)||(14654847-14655306)
chr1 (574-696)||(16104778-16104900)
chr1 (575-708)||(19656889-19657022)
chr1 (575-696)||(14650847-14650969)
chr1 (575-696)||(14660638-14660760)
chr1 (575-696)||(17478215-17478336)
chr1 (575-689)||(29287704-29287817)
chr1 (575-643)||(17652807-17652875)
chr1 (575-646)||(47050059-47050130)
[»] chr5 (6 HSPs)
chr5 (253-696)||(5518656-5519096)
chr5 (28-415)||(38979104-38979479)
chr5 (424-538)||(38978534-38978649)
chr5 (575-683)||(42786077-42786185)
chr5 (574-696)||(27197779-27197902)
chr5 (577-695)||(15599416-15599535)
[»] chr3 (7 HSPs)
chr3 (18-275)||(7685246-7685504)
chr3 (560-691)||(7688409-7688541)
chr3 (575-696)||(5705065-5705186)
chr3 (575-696)||(28104392-28104514)
chr3 (575-696)||(28058009-28058131)
chr3 (575-696)||(28068434-28068556)
chr3 (575-681)||(19435605-19435710)
[»] scaffold0016 (1 HSPs)
scaffold0016 (260-592)||(76660-76992)
[»] chr2 (8 HSPs)
chr2 (575-696)||(10416520-10416641)
chr2 (575-708)||(4698464-4698597)
chr2 (488-587)||(9310540-9310639)
chr2 (574-683)||(808176-808285)
chr2 (575-681)||(2588428-2588533)
chr2 (254-492)||(9305879-9306115)
chr2 (575-643)||(44324742-44324810)
chr2 (597-645)||(45333308-45333356)
[»] chr6 (11 HSPs)
chr6 (432-587)||(27684718-27684874)
chr6 (574-696)||(33063689-33063811)
chr6 (587-697)||(30130915-30131025)
chr6 (575-696)||(27527824-27527946)
chr6 (575-709)||(33056197-33056334)
chr6 (584-689)||(15969961-15970066)
chr6 (575-680)||(28041304-28041408)
chr6 (575-643)||(22014634-22014702)
chr6 (578-695)||(6952786-6952903)
chr6 (572-646)||(25477662-25477735)
chr6 (470-521)||(16692837-16692888)
[»] chr7 (2 HSPs)
chr7 (573-696)||(28804133-28804256)
chr7 (565-696)||(26525371-26525503)
[»] chr4 (5 HSPs)
chr4 (573-692)||(5358101-5358221)
chr4 (578-695)||(30873893-30874010)
chr4 (575-681)||(27560628-27560733)
chr4 (575-669)||(51534234-51534327)
chr4 (575-669)||(18693730-18693823)
[»] chr8 (3 HSPs)
chr8 (574-696)||(28602613-28602735)
chr8 (575-685)||(15925525-15925635)
chr8 (575-683)||(4706151-4706259)
[»] scaffold0713 (1 HSPs)
scaffold0713 (597-696)||(1289-1388)
[»] scaffold0002 (4 HSPs)
scaffold0002 (574-667)||(10306-10399)
scaffold0002 (577-696)||(406455-406574)
scaffold0002 (652-696)||(412530-412574)
scaffold0002 (577-696)||(423827-423945)
[»] scaffold0014 (1 HSPs)
scaffold0014 (574-696)||(115262-115384)
[»] scaffold0012 (1 HSPs)
scaffold0012 (575-695)||(233054-233174)
[»] scaffold0654 (2 HSPs)
scaffold0654 (574-694)||(3957-4077)
scaffold0654 (574-694)||(5309-5431)
[»] scaffold0406 (1 HSPs)
scaffold0406 (574-675)||(4129-4228)
[»] scaffold0007 (1 HSPs)
scaffold0007 (597-643)||(61210-61256)


Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 161 - 696
Target Start/End: Complemental strand, 16101860 - 16101322
Alignment:
Q  161 gcaaaatttgccttcctctaagaacctcaacattaactactcttaca--accaactacgttcgtcaacatgaacgccataagtacagaccaaaccacgac 258  Q
    |||||||| |||||||| ||  |||||||||| |||||||| |||||  | | || |||| | |||||||||||||||||||||| ||||||||||| ||    
T  16101860 gcaaaattcgccttcctatagaaacctcaacactaactacttttacataagctac-acgtccatcaacatgaacgccataagtacggaccaaaccacaac 16101762  T
Q  259 ctctttgactagggtcttaaggttggg-cagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccgaatga 357  Q
    |||||||||||||| ||||||||| || |||||||||||||||||||||||||| |  ||||||||||||||| ||||||||||||||| ||||||||||    
T  16101761 ctctttgactagggccttaaggtttggacagtaaacccataaggaattatcttcccc-ctagtggtgatcataaaattgggtgacatcctcaccgaatga 16101663  T
Q  358 aaggaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactaccatag 457  Q
    ||| |||||||  |||| |||||| ||||| |||||||||| |||| ||||||||||||| | | |||| ||||| ||||||||||||||||||||||||    
T  16101662 aagaaaattgaccaaaattaggacaagacaacaaacaaagtaagaccaatcaaagaccaaaagaaataacaagattggacaacaaatgacactaccatag 16101563  T
Q  458 aatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaacc 557  Q
     ||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  16101562 gatgcaaatagatttttgcaagtaaatggtgccgcagttcacaatttactaacaagaatctattttcattctatgtctgcagctagtaggacctacaacc 16101463  T
Q  558 -gagctctgataccaac-ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttga 655  Q
     |||||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||    
T  16101462 agagctctgataccaactttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttga 16101363  T
Q  656 caaactataatttaaacaattttcaaattgactttcactta 696  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  16101362 caaactataatttaaacaattttcaagttgactttcactta 16101322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 239 - 696
Target Start/End: Complemental strand, 14655306 - 14654847
Alignment:
Q  239 agtacagaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattggg 338  Q
    ||||| |||| || ||||| ||||||||||| |||||||||||||||||||||||||||||| || ||  ||| |||||||||||||| |||||||||||    
T  14655306 agtacggaccgaaacacgaactctttgactaaggtcttaaggttgggcagtaaacccataagaaactaatttcccttctagtggtgataatagaattggg 14655207  T
Q  339 tgacatccacaccgaatgaaaggaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggaca 438  Q
    ||||| || || |||||||||| |||||||  ||||||||||||||||| |||||||| | | |||| ||||||||||| | | |||||||||| |||||    
T  14655206 tgacaccctcatcgaatgaaagaaaattgaccaaaaataggacgagacaacaaacaaaataaaacaattcaaagaccaaaagagataataagattggaca 14655107  T
Q  439 acaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgca 538  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14655106 acaaatgacactaccatagaatccaaatagatttttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcgttctatgtctgca 14655007  T
Q  539 gctattaggacctacaaccgagctctgataccaac-ttgtcacgaccc-aaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaa 636  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||   ||||||||||| ||||||||||| ||||||||||||||||    
T  14655006 gctattaggacctacaaccgagctctgataccaactttgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaa 14654907  T
Q  637 gcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 696  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  14654906 gcctaatgacaacacttgacaaactataatttaaataattttcaaattgactttcactta 14654847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 574 - 696
Target Start/End: Complemental strand, 16104900 - 16104778
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  16104900 ttgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgactacacttgacaaactataatttaaaca 16104801  T
Q  674 attttcaaattgactttcactta 696  Q
    |||||||||||||||||||||||    
T  16104800 attttcaaattgactttcactta 16104778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 575 - 708
Target Start/End: Original strand, 19656889 - 19657022
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19656889 tgtcacgacccaagattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacaatccttgacaaactataatttaaacaa 19656988  T
Q  675 ttttcaaattgactttcacttatgatgatgtcca 708  Q
    |||||||||| |||||||||||| ||||| ||||    
T  19656989 ttttcaaatttactttcacttataatgatatcca 19657022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 575 - 696
Target Start/End: Complemental strand, 14650969 - 14650847
Alignment:
Q  575 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14650969 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14650870  T
Q  674 attttcaaattgactttcactta 696  Q
    |||||||||||||||||||||||    
T  14650869 attttcaaattgactttcactta 14650847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 575 - 696
Target Start/End: Complemental strand, 14660760 - 14660638
Alignment:
Q  575 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  14660760 tgtcacgacccaaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 14660661  T
Q  674 attttcaaattgactttcactta 696  Q
    |||||||||||||||||||||||    
T  14660660 attttcaaattgactttcactta 14660638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 575 - 696
Target Start/End: Original strand, 17478215 - 17478336
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||| |||||     
T  17478215 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagccaattgacaacacttgacaaactataattcaaacat 17478314  T
Q  675 ttttcaaattgactttcactta 696  Q
    ||| ||||||||||||||||||    
T  17478315 tttccaaattgactttcactta 17478336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 575 - 689
Target Start/End: Original strand, 29287704 - 29287817
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  29287704 tgtcacgacccaaaattcacgatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgac-aactataatttaaacaa 29287802  T
Q  675 ttttcaaattgactt 689  Q
    ||||||| |||||||    
T  29287803 ttttcaatttgactt 29287817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 575 - 643
Target Start/End: Original strand, 17652807 - 17652875
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 643  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  17652807 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 17652875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 646
Target Start/End: Original strand, 47050059 - 47050130
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 646  Q
    |||||||||||||||||||    |||||| ||| ||| ||||||| |||||||||||| ||||| |||||||    
T  47050059 tgtcacgacccaaaattcacaaccgtgactggcgcacaaactagaacatcctagtccgacaagcatattgac 47050130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 253 - 696
Target Start/End: Original strand, 5518656 - 5519096
Alignment:
Q  253 cacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccg 352  Q
    |||||||||||| |||| ||| ||| ||||||||     |||||||||||||||  ||| |||||||||||||||||||||||||   |||||   || |    
T  5518656 cacgacctctttaactaaggttttacggttgggcg----acccataaggaattaatttcccttctagtggtgatcatagaattggagaacatcattactg 5518751  T
Q  353 aatgaaaggaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactac 452  Q
    |||||||| ||| |||  ||| ||| ||||||||  ||||||||||||||||| ||||||||||| | | |||||||||| ||||||||||| |||||||    
T  5518752 aatgaaagaaaactgaccaaatataagacgagacgacaaacaaagtgagacaattcaaagaccaaaagaaataataagattggacaacaaataacactac 5518851  T
Q  453 catagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggaccta 552  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5518852 catagaatgcaaatagattcttgcaagtaaatggtgccgcggttcacaatttactagcaagaatctattttaattctatgtctgcagttattaggaccta 5518951  T
Q  553 caaccgagctctgataccaac-ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaaccc 651  Q
    |||||| |||||||||||||| ||||||||||||||||||||   ||||||||||| ||||||||||| |||| ||||||||||||||||||||| || |    
T  5518952 caaccgggctctgataccaactttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcatagtccggcaagcctattgacgacac 5519051  T
Q  652 ttgacaaactataatttaaacaattttcaaattgactttcactta 696  Q
    || |||||||||||||||||||||||| |||| ||  ||||||||    
T  5519052 ttaacaaactataatttaaacaatttttaaatcgaaattcactta 5519096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 28 - 415
Target Start/End: Complemental strand, 38979479 - 38979104
Alignment:
Q  28 tccaaatgaatttgtcgtctactgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttcccaacaataann 127  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||| | | |||||||||||| ||||||||||||||||||||||||| ||      
T  38979479 tccagatgaatttgtcgtctactgctcaccctaacta-ctccttgttgaccgtccagatttgtttgtct-agattatcatgttgcttcccaacaaaaacc 38979382  T
Q  128 nnnnnaaaataaataattgttggaaaactagtagcaaaatttgccttcctctaagaacctcaacattaactactcttacaaccaa-ctacgttcgtcaac 226  Q
              ||  | |||||| |||||   | |||||||| ||||||||||| |||| | |||| ||||||||  ||||| ||| |||||| |||||||    
T  38979381 ccc-------aacaagttgttgcaaaacccatggcaaaattcgccttcctctaggaacattaacagtaactactactacaaacaagctacgtccgtcaac 38979289  T
Q  227 atgaacgccataagtacagaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgat 326  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  38979288 atgaacgacataagtgcagaccaaaccacgacctctttgactagggtcttaaggttgggcagtaaacccattaggaattatcttcccttctagtggtgat 38979189  T
Q  327 catagaattgggtgacatccacaccgaatgaaaggaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagacc 415  Q
     || |||||||||||||| | ||||||||||||| |||||||  |||||||| |||||||    ||||||||||||||| |||||||||    
T  38979188 aattgaattgggtgacatactcaccgaatgaaagaaaattgaccaaaaatagaacgagac----aacaaagtgagacaattcaaagacc 38979104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 424 - 538
Target Start/End: Complemental strand, 38978649 - 38978534
Alignment:
Q  424 taataagatcggacaacaaatgacactaccatagaatgcaaatagattttt-gaaagtaaatggtgccgcggttcacaatttactagcaagaatctattt 522  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||    
T  38978649 taataagattgaacaacaaatgacactaccatagaatgcaagtagattttttgcaagtaaatggtgccgcggctcacaatttactagcaagaatctattt 38978550  T
Q  523 tcattctatgtctgca 538  Q
    ||| ||| ||||||||    
T  38978549 tcactctgtgtctgca 38978534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 575 - 683
Target Start/End: Complemental strand, 42786185 - 42786077
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    ||||||||||||||||| |   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||||    
T  42786185 tgtcacgacccaaaatttataatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaacaa 42786086  T
Q  675 ttttcaaat 683  Q
    |||| ||||    
T  42786085 tttttaaat 42786077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 574 - 696
Target Start/End: Original strand, 27197779 - 27197902
Alignment:
Q  574 ttgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 672  Q
    |||||||||||||||| ||||   |||||| |||| ||||||||||| ||||||||| ||||||| ||| ||||||| |||||||||||||||| ||||     
T  27197779 ttgtcacgacccaaaaattcacaatcgtgatcggcgcacgaactagaacatcctagttcggcaagtctaatgacaacacttgacaaactataatataaat 27197878  T
Q  673 aattttcaaattgactttcactta 696  Q
    |||||| |||||||||||||||||    
T  27197879 aatttttaaattgactttcactta 27197902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 577 - 695
Target Start/End: Complemental strand, 15599535 - 15599416
Alignment:
Q  577 tcacgacccaaaat-tcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaat 675  Q
    |||||||||||||  ||||  ||||||| | | ||||||||||| ||||||||| |||||||||||||||| || |||||||  | | |||||| || ||    
T  15599535 tcacgacccaaaaactcaaaatcgtgacggacgcacgaactagaacatcctagttcggcaagcctattgacgacacttgacacgcaaaaatttagactat 15599436  T
Q  676 tttcaaattgactttcactt 695  Q
    || ||| |||| ||||||||    
T  15599435 ttccaatttgaatttcactt 15599416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 174; Significance: 3e-93; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 18 - 275
Target Start/End: Complemental strand, 7685504 - 7685246
Alignment:
Q  18 cataatcacttccaaatgaatttgtcgtctactgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttccc 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7685504 cataatcacttccaaatgaatttctcgtctactgctcaccctaactaactccttgttgaccgccaaaatttgtttgtcttagattatcatgttgcttccc 7685405  T
Q  118 aacaataannnnnnnaaaataaataattgttggaaaactagtagcaaaatttgccttcctctaagaacctcaacattaactactcttacaaccaa-ctac 216  Q
    ||||| ||       |||||||||||||||||  |||  ||| |||||||| ||||||| ||| ||||||||||||||||| ||||||||||||| ||||    
T  7685404 aacaacaacccccccaaaataaataattgttgctaaaacagtggcaaaattcgccttccgctaggaacctcaacattaactgctcttacaaccaagctac 7685305  T
Q  217 gttcgtcaacatgaacgccataagtacagaccaaaccacgacctctttgactagggtct 275  Q
    || ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  7685304 gtccgtcaacatgaacaccataagtaccgaccaaaccacgacctctttgactagggtct 7685246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 560 - 691
Target Start/End: Original strand, 7688409 - 7688541
Alignment:
Q  560 gctctgataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaa 658  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  7688409 gctctgataccaactttgtcacgacctaaaattcaatttcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacccttgacaa 7688508  T
Q  659 actataatttaaacaattttcaaattgactttc 691  Q
    |||||||||||||||||||||||||||||||||    
T  7688509 actataatttaaacaattttcaaattgactttc 7688541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 575 - 696
Target Start/End: Original strand, 5705065 - 5705186
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    ||||||||||||||||||||| ||||||||||| | |||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5705065 tgtcacgacccaaaattcaatatcgtgaccggcgctcgaactaagacatcctagtccggcaagcctattgacgacccttgacaaactataatttaaacaa 5705164  T
Q  675 ttttcaaattgactttcactta 696  Q
    |||||||| |||||||||||||    
T  5705165 ttttcaaactgactttcactta 5705186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 575 - 696
Target Start/End: Complemental strand, 28104514 - 28104392
Alignment:
Q  575 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||| ||||  |||||||||||| || |||||||| ||||||||||||||||||||| |||| || ||||||||||||||||||| | |    
T  28104514 tgtcacgacccaaaaattcacattcgtgaccggcgcatgaactagaacatcctagtccggcaagcctaatgacgacacttgacaaactataatttagata 28104415  T
Q  674 attttcaaattgactttcactta 696  Q
    | |||||||||||||||||||||    
T  28104414 aatttcaaattgactttcactta 28104392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 575 - 696
Target Start/End: Original strand, 28058009 - 28058131
Alignment:
Q  575 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28058009 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28058108  T
Q  674 attttcaaattgactttcactta 696  Q
    | ||||||||| |||||||||||    
T  28058109 aatttcaaatttactttcactta 28058131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 575 - 696
Target Start/End: Original strand, 28068434 - 28068556
Alignment:
Q  575 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||| ||||  || ||||||||| ||||||||||| ||||||||||||||||||||| | |||||  |||||||||||||||||| | |    
T  28068434 tgtcacgacccaaaaattcacatttgtgaccggcgcacgaactagaacatcctagtccggcaagcctaataacaacagttgacaaactataatttagata 28068533  T
Q  674 attttcaaattgactttcactta 696  Q
    | ||||||||| |||||||||||    
T  28068534 aatttcaaatttactttcactta 28068556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 681
Target Start/End: Complemental strand, 19435710 - 19435605
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| ||| |||| |||| |||||||| || |||||| |||||||||||||||||    
T  19435710 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctaatccgacaagtctattgacgacacttgac-aactataatttaaacaa 19435612  T
Q  675 ttttcaa 681  Q
    |||||||    
T  19435611 ttttcaa 19435605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 260 - 592
Target Start/End: Complemental strand, 76992 - 76660
Alignment:
Q  260 tctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccgaatgaaa 359  Q
    ||||| |||| ||| ||||||||||||| |||| ||||||| |||||  ||| |||||||||| |||| | | | ||||||||| || |||  ||||||     
T  76992 tctttaactaaggttttaaggttgggcaataaatccataagaaattaatttcccttctagtggagatcttggtaatgggtgacaccctcactaaatgaag 76893  T
Q  360 ggaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactaccatagaa 459  Q
    | |||||||   || | ||||| ||||  |||| | |||||||||||||||||||||| | | || | ||||| | |||| || | ||||||||| | ||    
T  76892 gaaaattgactgaataaaggacaagacgacaaa-atagtgagacaaatcaaagaccaaaagaaatcacaagattgaacaataagtaacactaccacataa 76794  T
Q  460 tgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccga 559  Q
    ||| |||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  76793 tgctaatagattttcgcaagtaaatggtgtcgcggttcacaatttactagcaagaatctattttcattctatgtctgcacctattaggacctactaccat 76694  T
Q  560 gctctgataccaac-ttgtcacgacccaaaattc 592  Q
    |||||||||||||| |||||||||  ||||||||    
T  76693 gctctgataccaactttgtcacgattcaaaattc 76660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 3e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 575 - 696
Target Start/End: Complemental strand, 10416641 - 10416520
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  10416641 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgacgacacttgacaaactacaatttaaacaa 10416542  T
Q  675 ttttcaaattgactttcactta 696  Q
    ||||||||||||||||||||||    
T  10416541 ttttcaaattgactttcactta 10416520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 575 - 708
Target Start/End: Complemental strand, 4698597 - 4698464
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    ||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||| ||||| || |||||||||||||||||||||||||||    
T  4698597 tgtcacgacccaaaattcaatttcgtgaccggcgcatgaactagaacatcctagtccggcaagtctattaacgacccttgacaaactataatttaaacaa 4698498  T
Q  675 ttttcaaattgactttcacttatgatgatgtcca 708  Q
    ||||||||||||||||||||| | ||||| ||||    
T  4698497 ttttcaaattgactttcacttgtaatgatatcca 4698464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 488 - 587
Target Start/End: Original strand, 9310540 - 9310639
Alignment:
Q  488 gccgcggttcacaatttactagcaagaatctattttcattctatgtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgaccca 586  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||    
T  9310540 gccgcggttcacaatttactagcaagaatctattttcattc-atgtctgcagctattaggacctacaaccgggctctgatatcaactttgtcacgaccca 9310638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 574 - 683
Target Start/End: Original strand, 808176 - 808285
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||||||||   ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||| |||||||||||||||||||    
T  808176 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttaacaaactataatttaaaca 808275  T
Q  674 attttcaaat 683  Q
    ||||| ||||    
T  808276 atttttaaat 808285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 575 - 681
Target Start/End: Complemental strand, 2588533 - 2588428
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    |||||||||||||||||||   |||||| |||| ||||||||||| |||||||||||||||||||||||||| || |||| | ||||||| |||||||||    
T  2588533 tgtcacgacccaaaattcacaatcgtgaacggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttggc-aactatagtttaaacaa 2588435  T
Q  675 ttttcaa 681  Q
    |||||||    
T  2588434 ttttcaa 2588428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 254 - 492
Target Start/End: Original strand, 9305879 - 9306115
Alignment:
Q  254 acgacctctttgactagggtcttaaggttgggcagtaaacccataaggaattatcttcacttctagtggtgatcatagaattgggtgacatccacaccga 353  Q
    ||||||||||| |||| ||| |||||||||| || ||||| ||||||||||||  ||| |||||||||| |||| | | | ||||||||| |  |||  |    
T  9305879 acgacctctttaactaaggt-ttaaggttggccaataaactcataaggaattaatttcccttctagtggagatcttggtaatgggtgacaccttcacaaa 9305977  T
Q  354 atgaaaggaaattgataaaaaataggacgagacatcaaacaaagtgagacaaatcaaagaccaacaaatataataagatcggacaacaaatgacactacc 453  Q
    ||| | | |||||||   || ||||||| ||||  |||| | |||||||| ||||||| |||||  || || | ||||| ||||||||| |||||| |||    
T  9305978 atgcaggaaaattgaccgaatataggacaagacgacaaa-agagtgagaccaatcaaaaaccaaataaaatcacaagattggacaacaagtgacacaacc 9306076  T
Q  454 atagaatgcaaatagatttttgaaagtaaatggtgccgc 492  Q
     |||||||| |||||||||||| ||||||||||||||||    
T  9306077 gtagaatgctaatagatttttgcaagtaaatggtgccgc 9306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 575 - 643
Target Start/End: Complemental strand, 44324810 - 44324742
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 643  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  44324810 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 44324742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 597 - 645
Target Start/End: Complemental strand, 45333356 - 45333308
Alignment:
Q  597 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattga 645  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||||    
T  45333356 tcgtgaccggcgcacgaactagaacattctagcccggcaagcctattga 45333308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 3e-47; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 432 - 587
Target Start/End: Complemental strand, 27684874 - 27684718
Alignment:
Q  432 tcggacaacaaatgacactaccatagaatgcaaatagatttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctattttcattctat 531  Q
    ||||||||||||||| ||||||||||| | | ||||| ||||||  ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  27684874 tcggacaacaaatgagactaccatagagttctaatagctttttgcgagtaaatggtgccgcggttcacaatttactagcaaaaatctattatcactctat 27684775  T
Q  532 gtctgcagctattaggacctacaaccgagctctgataccaac-ttgtcacgacccaa 587  Q
    ||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||    
T  27684774 gtctgcagctatttggacctaaaaccgggctctgataccaactttgtcacgacccaa 27684718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 574 - 696
Target Start/End: Complemental strand, 33063811 - 33063689
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    |||||||||||||||||||||| || ||||||||  ||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||    
T  33063811 ttgtcacgacccaaaattcaatatcatgaccggcgtacgaactagagcaccctagtccggcaagcctattgacgacacttgacaaactataatttaaaca 33063712  T
Q  674 attttcaaattgactttcactta 696  Q
    |||||||||||||||||||||||    
T  33063711 attttcaaattgactttcactta 33063689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 587 - 697
Target Start/End: Complemental strand, 30131025 - 30130915
Alignment:
Q  587 aaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattga 686  Q
    |||||||||||||||| |||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30131025 aaattcaatttcgtgatcggcgcacgaactagagcttcctagtccggaaagcctattgacgacccttgacaaactataatttaaacaattttcaaattga 30130926  T
Q  687 ctttcacttat 697  Q
    |||||||||||    
T  30130925 ctttcacttat 30130915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 575 - 696
Target Start/End: Complemental strand, 27527946 - 27527824
Alignment:
Q  575 tgtcacgacccaaaa-ttcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||| ||||   ||||||||| | ||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||| |    
T  27527946 tgtcacgacccaaaaattcacaatcgtgaccgacgcacgaactagaacatcctagtccggcaagcctaatgacaacacttgacaaactataatttaaata 27527847  T
Q  674 attttcaaattgactttcactta 696  Q
    |||||||||||||||||||||||    
T  27527846 attttcaaattgactttcactta 27527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 575 - 709
Target Start/End: Complemental strand, 33056334 - 33056197
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt---gacaacccttgacaaactataatttaaa 671  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||| | |||||||||| |||||||||   ||| || |||||||||||||||||||||    
T  33056334 tgtcaagacccaaaattcaatatcgtgaccggcgcacgaactagagtaccctagtccggtaagcctattgacgacgacacttgacaaactataatttaaa 33056235  T
Q  672 caattttcaaattgactttcacttatgatgatgtccat 709  Q
    ||||||| |||||||||||||||||  ||||| |||||    
T  33056234 caatttttaaattgactttcacttaaaatgatatccat 33056197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 584 - 689
Target Start/End: Original strand, 15969961 - 15970066
Alignment:
Q  584 ccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaat 683  Q
    ||||||||||   ||||||||||| |||||| |||| |||| ||| |||||||| ||| |||| || |||||||||||||||||||||||||||||||||    
T  15969961 ccaaaattcacaatcgtgaccggcgcacgaaatagaacatcgtagcccggcaagtctaatgacgacacttgacaaactataatttaaacaattttcaaat 15970060  T
Q  684 tgactt 689  Q
    ||||||    
T  15970061 tgactt 15970066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 575 - 680
Target Start/End: Complemental strand, 28041408 - 28041304
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||| |||| ||||||| || |||| | |||||||||||||||||    
T  28041408 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggtaagcttattgacgacacttggc-aactataatttaaacaa 28041310  T
Q  675 ttttca 680  Q
    ||||||    
T  28041309 ttttca 28041304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 575 - 643
Target Start/End: Complemental strand, 22014702 - 22014634
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 643  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  22014702 tgtcacgacccaaaattcaatatcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 22014634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 578 - 695
Target Start/End: Complemental strand, 6952903 - 6952786
Alignment:
Q  578 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 677  Q
    |||||||||||||| ||  || |||||||  ||| ||||||| || ||||||  | ||||| ||||||| || |||| ||||||||||||||||||||||    
T  6952903 cacgacccaaaatttaaaatcctgaccggtgcacaaactagaacaacctagtatgacaagcttattgacgacacttggcaaactataatttaaacaattt 6952804  T
Q  678 tcaaattgactttcactt 695  Q
    | ||||| ||||||||||    
T  6952803 ttaaattaactttcactt 6952786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 572 - 646
Target Start/End: Original strand, 25477662 - 25477735
Alignment:
Q  572 acttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgac 646  Q
    ||||||||||||||||| ||||   |||| |||||| ||||||||||| ||||||||||||||||||||||||||    
T  25477662 acttgtcacgacccaaa-ttcacaatcgtaaccggcgcacgaactagaacatcctagtccggcaagcctattgac 25477735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 470 - 521
Target Start/End: Original strand, 16692837 - 16692888
Alignment:
Q  470 tttttgaaagtaaatggtgccgcggttcacaatttactagcaagaatctatt 521  Q
    |||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  16692837 tttttgaaagtaaacggtgccgtggttcacaatttactagcaaaaatctatt 16692888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 573 - 696
Target Start/End: Complemental strand, 28804256 - 28804133
Alignment:
Q  573 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 672  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |||||||  || ||||||||||||||||||||||    
T  28804256 cttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagtctattgatgacacttgacaaactataatttaaac 28804157  T
Q  673 aattttcaaattgactttcactta 696  Q
    |||||| ||||||  |||||||||    
T  28804156 aatttttaaattgtttttcactta 28804133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 565 - 696
Target Start/End: Complemental strand, 26525503 - 26525371
Alignment:
Q  565 gataccaactt-gtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactat 663  Q
    ||||||||||| ||||||||| |||||||||| ||||||||||| ||||||||||| | | |||| ||| |||| |||||||| || |||||||||||||    
T  26525503 gataccaactttgtcacgaccaaaaattcaatatcgtgaccggcgcacgaactagaactttctagcccgacaagtctattgacgacacttgacaaactat 26525404  T
Q  664 aatttaaacaattttcaaattgactttcactta 696  Q
    ||||| || | ||||||| ||||||| ||||||    
T  26525403 aatttgaaaatttttcaatttgacttccactta 26525371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 9e-38; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 573 - 692
Target Start/End: Original strand, 5358101 - 5358221
Alignment:
Q  573 cttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaac 672  Q
    ||||||||||||||||||  ||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  5358101 cttgtcacgacccaaaatctaaaatcgtgaccggcgcacgaactagaacatcctagtccggcaagcctattgacgacacttgacaaactataatttaaac 5358200  T
Q  673 aattttcaaa-ttgactttca 692  Q
    |||||||||| ||||||||||    
T  5358201 aattttcaaatttgactttca 5358221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 578 - 695
Target Start/End: Original strand, 30873893 - 30874010
Alignment:
Q  578 cacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattt 677  Q
    |||| ||||||||||||  ||||||||||| ||| ||||||| |||| ||||||||||||||||||||| || |||||||||||||||||||||||||||    
T  30873893 cacggcccaaaattcaaaatcgtgaccggcgcacaaactagaacatcttagtccggcaagcctattgacgacacttgacaaactataatttaaacaattt 30873992  T
Q  678 tcaaattgactttcactt 695  Q
    | |||||||| |||||||    
T  30873993 ttaaattgaccttcactt 30874010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 575 - 681
Target Start/End: Original strand, 27560628 - 27560733
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    ||||| |||||||||||||   ||||||||||| ||||||||||| ||||||||| |||||||||||||||| || |||| | |||||||||||||||||    
T  27560628 tgtcaggacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagcctattgacgacacttggc-aactataatttaaacaa 27560726  T
Q  675 ttttcaa 681  Q
    |||||||    
T  27560727 ttttcaa 27560733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 575 - 669
Target Start/End: Complemental strand, 51534327 - 51534234
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 669  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || |||||| ||||||||||||    
T  51534327 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgaccacacttgac-aactataattta 51534234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 575 - 669
Target Start/End: Original strand, 18693730 - 18693823
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataattta 669  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||| |||||||||||||||||||||| || | |||| ||||||||||||    
T  18693730 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacattctagtccggcaagcctattgacgacacatgac-aactataattta 18693823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 574 - 696
Target Start/End: Original strand, 28602613 - 28602735
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||||||||   ||||||||||| |||||| |||| ||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  28602613 ttgtcacgacccaaaattcacaatcgtgaccggcgcacgaattagaacatcctagtccggcaagcctattaacgacacttgacaaactataatttaaaca 28602712  T
Q  674 attttcaaattgactttcactta 696  Q
    |||||||||| ||  ||||||||    
T  28602713 attttcaaatcgaaattcactta 28602735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 575 - 685
Target Start/End: Complemental strand, 15925635 - 15925525
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    ||||||||||||||||| ||| ||||||||||| ||| || ||||||||||||||||| ||||||||||||   | ||||| || |||||||||||||||    
T  15925635 tgtcacgacccaaaatttaatatcgtgaccggcgcacaaattagagcatcctagtccgtcaagcctattgatggcacttgataacctataatttaaacaa 15925536  T
Q  675 ttttcaaattg 685  Q
    |||||||||||    
T  15925535 ttttcaaattg 15925525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 575 - 683
Target Start/End: Original strand, 4706151 - 4706259
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    |||||||||||||||||||   ||||||||||| ||| ||||||| |||||||||||||||||||  ||||| || ||| ||||||||||||||||||||    
T  4706151 tgtcacgacccaaaattcacaatcgtgaccggcgcacaaactagaacatcctagtccggcaagcccgttgacgacacttaacaaactataatttaaacaa 4706250  T
Q  675 ttttcaaat 683  Q
    |||| ||||    
T  4706251 tttttaaat 4706259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 597 - 696
Target Start/End: Complemental strand, 1388 - 1289
Alignment:
Q  597 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaattttcaaattgactttcactta 696  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1388 tcgtgaccggcgcacgaactagaacatcctagtccggaaagcctaatgacaacacttgacaaactataatttaaataattttcaaattgacttacactta 1289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 70; Significance: 3e-31; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 574 - 667
Target Start/End: Complemental strand, 10399 - 10306
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatt 667  Q
    |||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||  || |||||||||||||||||    
T  10399 ttgtcacgacccaaaatttaatatcgtgaccggcgcacgaactagagcatcctagtccggcaagcctattgatgacacttgacaaactataatt 10306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 577 - 696
Target Start/End: Original strand, 406455 - 406574
Alignment:
Q  577 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 676  Q
    ||||||||||||||||||  |||||| |||| ||||||||||| |||||| ||| |  || ||||||||| |  ||||||||||||||||||||| ||||    
T  406455 tcacgacccaaaattcaaaatcgtgatcggcgcacgaactagaacatccttgtcagtaaaacctattgacgaaacttgacaaactataatttaaataatt 406554  T
Q  677 ttcaaattgactttcactta 696  Q
    || |||||||||||||||||    
T  406555 tttaaattgactttcactta 406574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 696
Target Start/End: Original strand, 412530 - 412574
Alignment:
Q  652 ttgacaaactataatttaaacaattttcaaattgactttcactta 696  Q
    |||| ||||||||||||||| |||||| |||||||||||||||||    
T  412530 ttgagaaactataatttaaataatttttaaattgactttcactta 412574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 577 - 696
Target Start/End: Original strand, 423827 - 423945
Alignment:
Q  577 tcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaatt 676  Q
    |||||||||||||||||   | |||| |||  ||| ||||| | ||| ||||||||  ||  |||||||| |  |||||||||||||| |||||||||||    
T  423827 tcacgacccaaaattcacaattgtgatcggtgcacaaactaaaacattctagtccgaaaaatctattgacgaaacttgacaaactata-tttaaacaatt 423925  T
Q  677 ttcaaattgactttcactta 696  Q
    || ||||||| |||||||||    
T  423926 tttaaattgattttcactta 423945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 574 - 696
Target Start/End: Original strand, 115262 - 115384
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||||||||   || ||| |||| |||||||||||  |||||| || |||||| |||||||| || ||||||| |||||||||||||||    
T  115262 ttgtcacgacccaaaattcacaatcatgatcggcgcacgaactagaatatcctaatcaggcaagtctattgacgacacttgacacactataatttaaaca 115361  T
Q  674 attttcaaattgactttcactta 696  Q
    ||||||||||||| |||||||||    
T  115362 attttcaaattgattttcactta 115384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 61; Significance: 8e-26; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 575 - 695
Target Start/End: Original strand, 233054 - 233174
Alignment:
Q  575 tgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaacaa 674  Q
    |||||||||||||||||||   ||||||||||| ||||||||||| ||||||||| ||||||| ||||||||||| ||||||||| || |||| | || |    
T  233054 tgtcacgacccaaaattcacaatcgtgaccggcgcacgaactagaacatcctagttcggcaagtctattgacaacacttgacaaattaaaattcagacta 233153  T
Q  675 ttttcaaattgactttcactt 695  Q
    ||| ||| |||||||||||||    
T  233154 tttccaatttgactttcactt 233174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 574 - 694
Target Start/End: Original strand, 3957 - 4077
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| ||||| || || |||| || |||||||||||||||    
T  3957 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattaacgacacttggcacactataatttaaaca 4056  T
Q  674 attttcaaattgactttcact 694  Q
    ||||| ||||||| |||||||    
T  4057 atttttaaattgattttcact 4077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0654; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 574 - 694
Target Start/End: Original strand, 5309 - 5431
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaac--tataatttaaa 671  Q
    ||||||||||||||||||||   | |||| |||| ||||||||||| |||||||||| |||||| |||||||| || ||||||| ||  |||||||||||    
T  5309 ttgtcacgacccaaaattcacaatagtgatcggcgcacgaactagaacatcctagtcaggcaagtctattgacgacacttgacacactatataatttaaa 5408  T
Q  672 caattttcaaattgactttcact 694  Q
    ||||||| ||||||| |||||||    
T  5409 caatttttaaattgattttcact 5431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 574 - 675
Target Start/End: Complemental strand, 4228 - 4129
Alignment:
Q  574 ttgtcacgacccaaaattcaatttcgtgaccggcacacgaactagagcatcctagtccggcaagcctattgacaacccttgacaaactataatttaaaca 673  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | ||||||||||||||||    
T  4228 ttgtcacgacccaaa-ttcacaatcgtgaccggcgcacgaactagaacatcctagtccagcaagcctattgacgacacttggc-aactataatttaaaca 4131  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 597 - 643
Target Start/End: Complemental strand, 61256 - 61210
Alignment:
Q  597 tcgtgaccggcacacgaactagagcatcctagtccggcaagcctatt 643  Q
    ||||||||||| ||||||||||| ||| |||| ||||||||||||||    
T  61256 tcgtgaccggcgcacgaactagatcattctagcccggcaagcctatt 61210  T

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