View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18114_low_3 (Length: 680)

Name: NF18114_low_3
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18114_low_3
NF18114_low_3
[»] chr1 (7 HSPs)
chr1 (306-662)||(52077214-52077572)
chr1 (307-662)||(3615929-3616287)
chr1 (152-240)||(52077624-52077704)
chr1 (148-240)||(3616352-3616436)
chr1 (182-238)||(12666941-12666996)
chr1 (10-46)||(52077842-52077878)
chr1 (14-46)||(3616566-3616598)
[»] chr7 (3 HSPs)
chr7 (307-662)||(16756567-16756924)
chr7 (148-221)||(16756443-16756516)
chr7 (10-45)||(16756277-16756312)
[»] chr6 (1 HSPs)
chr6 (405-517)||(7309443-7309553)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 306 - 662
Target Start/End: Complemental strand, 52077572 - 52077214
Alignment:
Q  306 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatc 405  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  52077572 ctggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacaac 52077473  T
Q  406 cctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 505  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52077472 cctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 52077373  T
Q  506 ctctctgtcgagcacagaatcatcaatagtgtcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattatccct--tat 603  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||| |||||  |||    
T  52077372 ctctctgtcgagcacagaatcatcaatagcgtcctctttcatcgtcctttatttaatttacaagggtcatataataattaaaatcaattgtcccttatat 52077273  T
Q  604 gtattttcatcatcctttatttttccctgttggagttctaagaattgatgatgatgttt 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52077272 gtattttcatcatcctttatttttccctgttggagttctaagaattgatgatgatgttt 52077214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 307 - 662
Target Start/End: Complemental strand, 3616287 - 3615929
Alignment:
Q  307 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 406  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||    
T  3616287 tggttccttttagaaacaagattagtatttacaattaacccataaaaaatattattattaattctggttgttattaactattgttcatcgatctacaacc 3616188  T
Q  407 ctttcacaaaa-ccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcctt 505  Q
    ||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  3616187 ctttcacaaaaaccaattcatgttttctctctcaacaaacagtacataatttctcttatcactcactgtcgccgtttcctttctgcttcttcccttcctt 3616088  T
Q  506 ctctctgtcgagcacagaatcatcaatagtgtcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattatccct--tat 603  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||  |||    
T  3616087 ctctctgtcgagcacagaatcatcaatagcatcctctttcatcgtcctttatttaatttagaagggtcatataatgtttaaaatccattgtcccttatat 3615988  T
Q  604 gtattttcatcatcctttatttttccctgttggagttctaagaattgatgatgatgttt 662  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3615987 gtattttcatcatcctttatttttccctgttggagttctaagaattgatgatgatgttt 3615929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 52077704 - 52077624
Alignment:
Q  152 tctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 240  Q
    ||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| ||||||||    
T  52077704 tctccaggaatcttcatatcttcttctcccaaattcat--------cacacaccaccatcataaattcatccctacaccaccatcactg 52077624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 148 - 240
Target Start/End: Complemental strand, 3616436 - 3616352
Alignment:
Q  148 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcactg 240  Q
    ||||||||||||||||||||||||||||||||||||||        |||||| ||||| ||||||||||||||||| ||||||| ||||||||    
T  3616436 ttcatctccaggaatcttcatatcttcttctcccaaat--------tcatcagacaccgccatcataaattcatccatacaccaccatcactg 3616352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 182 - 238
Target Start/End: Complemental strand, 12666996 - 12666941
Alignment:
Q  182 aaattcataaattcatcacacaccaccatcataaattcatccctacaccatcatcac 238  Q
    |||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||    
T  12666996 aaattcataaat-catcacacaccaccatcataaattcatcactacaccaccatcac 12666941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 52077878 - 52077842
Alignment:
Q  10 catcatcaccattgatttctattaataataaacccag 46  Q
    |||||||||||||||||||||||||||||||||||||    
T  52077878 catcatcaccattgatttctattaataataaacccag 52077842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 3616598 - 3616566
Alignment:
Q  14 atcaccattgatttctattaataataaacccag 46  Q
    |||||||||||||||||||||||||||||||||    
T  3616598 atcaccattgatttctattaataataaacccag 3616566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 307 - 662
Target Start/End: Original strand, 16756567 - 16756924
Alignment:
Q  307 tggttccttttagaaacaagatttgtatttacgattaacccataaaaaatattattattaattctggctgttattaactattgttcatcgatctacatcc 406  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||    
T  16756567 tggttccttttagaatcaagatttgtatttacgattaacccataaaaaatattattattaattttggttgttattaactattgttcatcgatctacaacc 16756666  T
Q  407 ctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttccttc 506  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  16756667 ctttcacaaaaccaattcatgttttctctctcaacaaacagtatataatttctcttatcactcactatcgttgtttccttcctgcttcttcccttccttc 16756766  T
Q  507 tctctgtcgagcacagaatcatcaatagtgtcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattatccct--tatg 604  Q
    ||||||||||||||| |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  ||||    
T  16756767 tctctgtcgagcacaaaatcatcaataacatcctctttcatcgtcctttatttaatttacaagggtcatataatgtttaaaatccattgtcccttatatg 16756866  T
Q  605 tattttcatcatcctttatttttccctgttggagttctaagaattgatgatgatgttt 662  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16756867 tattttcatcatcctttatttttccctgttggagttctaagaattgatgatgatgttt 16756924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 16756443 - 16756516
Alignment:
Q  148 ttcatctccaggaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 221  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16756443 ttcatctccatgaatcttcatatcttcttctcccaaattcataaattcatcacacaccaccatcataaattcat 16756516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 10 - 45
Target Start/End: Original strand, 16756277 - 16756312
Alignment:
Q  10 catcatcaccattgatttctattaataataaaccca 45  Q
    ||||||||||||||||||||||||||||||||||||    
T  16756277 catcatcaccattgatttctattaataataaaccca 16756312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 405 - 517
Target Start/End: Original strand, 7309443 - 7309553
Alignment:
Q  405 ccctttcacaaaaccaattcatgttttctctgtcaacaaacagtatataatttctcttatcactcactatcgtcgtttcctttctgcttcttcccttcct 504  Q
    |||||||||||||| | ||||||||||||||  ||||||| |||||||||||||||||| |||  ||| ||  ||||||||||| ||||||||  |||||    
T  7309443 ccctttcacaaaacaagttcatgttttctct--caacaaaaagtatataatttctcttaccaccaactctcaccgtttcctttcagcttcttcttttcct 7309540  T
Q  505 tctctctgtcgag 517  Q
    |||||||||||||    
T  7309541 tctctctgtcgag 7309553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University