View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18114_low_4 (Length: 625)

Name: NF18114_low_4
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18114_low_4
NF18114_low_4
[»] chr7 (5 HSPs)
chr7 (22-609)||(45685285-45685869)
chr7 (271-353)||(31169225-31169306)
chr7 (166-235)||(5817181-5817250)
chr7 (166-235)||(23402924-23402993)
chr7 (167-236)||(23580825-23580893)
[»] chr4 (4 HSPs)
chr4 (166-235)||(34670576-34670645)
chr4 (166-233)||(18912276-18912343)
chr4 (327-453)||(42234067-42234192)
chr4 (191-235)||(5112379-5112423)
[»] chr5 (5 HSPs)
chr5 (283-411)||(25784925-25785052)
chr5 (166-232)||(33030854-33030920)
chr5 (53-110)||(34842608-34842665)
chr5 (166-238)||(3651617-3651689)
chr5 (179-235)||(28832387-28832443)
[»] chr2 (5 HSPs)
chr2 (164-233)||(35397626-35397694)
chr2 (27-83)||(44731945-44732001)
chr2 (186-238)||(44732088-44732140)
chr2 (166-235)||(28770685-28770754)
chr2 (179-235)||(2869603-2869659)
[»] chr1 (6 HSPs)
chr1 (166-236)||(918389-918460)
chr1 (324-374)||(6068290-6068340)
chr1 (166-233)||(35109450-35109517)
chr1 (164-234)||(32736908-32736978)
chr1 (166-235)||(17345430-17345499)
chr1 (179-235)||(32889570-32889626)
[»] chr8 (6 HSPs)
chr8 (166-235)||(9054748-9054817)
chr8 (180-236)||(6366636-6366692)
chr8 (381-453)||(11772235-11772307)
chr8 (142-359)||(37043664-37043883)
chr8 (166-232)||(3051237-3051303)
chr8 (179-235)||(19752304-19752360)
[»] chr6 (2 HSPs)
chr6 (167-235)||(31936695-31936763)
chr6 (170-235)||(1115015-1115080)
[»] chr3 (2 HSPs)
chr3 (266-336)||(37387632-37387701)
chr3 (166-235)||(1417391-1417460)


Alignment Details
Target: chr7 (Bit Score: 481; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 22 - 609
Target Start/End: Complemental strand, 45685869 - 45685285
Alignment:
Q  22 ggggatagagaaaaccaacacaccaatatccgtttacctagtttagacaaatttatcctacatttgagggagatagccactctctaatctaccatgaaaa 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  45685869 ggggatagagaaaaccaacacaccaatatctgtttacctagtttagacaaatttatcctacatctgagggagatagccactctctaatctaccatgaaaa 45685770  T
Q  122 tgaattatacaaggaaactacaagaacttaggtctcaagctgataaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaat 221  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  45685769 tgaattatacaaggaaactacaagaacttagatctcaagctgacaaagaacaaaccttaatttctatccattttttaagtcactcaaagtcgcaatgaat 45685670  T
Q  222 cctaagagaaaacaagaaatgaagnnnnnnnnatcctttctctgatgagatctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcac 321  Q
    ||||||||||||||||||| |||         ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  45685669 cctaagagaaaacaagaaa-gaaagtttttttatcctttctttgatgagatctgactatcaaaggtgtttgtgaattgtttcacaacccaagaatctcac 45685571  T
Q  322 ctcaaagacactcaacttttagcctttaagttccctcaaagttttctcatttgatttgtcaagattctctctcttaaaactactaaaaaattgaagattg 421  Q
    | ||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  45685570 cccaaagacactcaacttttaacctttaagttccctaaaagttttctcatttgatctgtcaagattctctctcttaaaactactaaaaaattgaagatcg 45685471  T
Q  422 aaagcttttatagtacccagacccaggcaaaaaatcgtgcaacgattttcctggcgccaatcagaaactcaaacacaatatcgttggaaatcctgatccc 521  Q
    |||||||||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45685470 aaagcttttatagtactcagacccaggc--aaaatcgtgcaacgattttcctggcgccaatcagaaactcaaacacaatatcgttggaaatcctaatccc 45685373  T
Q  522 cattcgcgctacgattccatctaatcgagacacgattcctttttatcgattcttcaataacttcatcaccaaattttgaaccaagttc 609  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45685372 cattcgcactacgattccatctaatcgagacacgattcctttttatcgattcttcaataacttcatcaccaaattttgaaccaagttc 45685285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 271 - 353
Target Start/End: Complemental strand, 31169306 - 31169225
Alignment:
Q  271 atctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaacttttagcctttaagtt 353  Q
    |||| |||||| |||||||||||||| |||||| ||| |||||||||||| | |||||||||| |||  ||||||||||||||    
T  31169306 atctcactatccaaggtgtttgtgaagtgtttcccaacccaagaatctca-cacaaagacacttaacccttagcctttaagtt 31169225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 5817250 - 5817181
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    |||||||||| | |||||||||||||||||| || ||||||| | || ||||||||||||||| ||||||    
T  5817250 aaagaacaaaacctaatttctatccatttttcaagtcactcacactctcaatgaatcctaagaaaaaaca 5817181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 23402993 - 23402924
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    |||||||||  | ||||||||| |||||||| | |||||||| | || ||||||||||||||||||||||    
T  23402993 aaagaacaagtcctaatttctacccatttttcacatcactcacactctcaatgaatcctaagagaaaaca 23402924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 23580893 - 23580825
Alignment:
Q  167 aagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaa 236  Q
    ||||||||||||||||||||||||| |||| || |||||||||  | ||||| ||| |||||||||||||    
T  23580893 aagaacaaaccttaatttctatcca-ttttcaagtcactcaaacccacaatggatcataagagaaaacaa 23580825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 34670645 - 34670576
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    |||||||||| | |||||||||||||||||| || ||||||| | || ||||||||||||||||||||||    
T  34670645 aaagaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaagagaaaaca 34670576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 18912343 - 18912276
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaa 233  Q
    |||||||||||| ||| || ||||||||||| || |||||||||  | ||||||||||||||||||||    
T  18912343 aaagaacaaaccctaaattatatccatttttcaagtcactcaaacccacaatgaatcctaagagaaaa 18912276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 327 - 453
Target Start/End: Complemental strand, 42234192 - 42234067
Alignment:
Q  327 agacactcaacttttagcctttaagttccctcaaagttttctcatttgatttgtcaagattctctctcttaaaactactaaaaaattgaagattgaaagc 426  Q
    |||||||||||| ||  ||| |||||||||| ||||||||||| |||| |||| ||||||||| |||||| || | ||  ||||| ||  || |||| ||    
T  42234192 agacactcaactcttcacctctaagttccctaaaagttttctc-tttggtttgacaagattctatctcttgaagcaacccaaaaaatgttgaatgaaggc 42234094  T
Q  427 ttttatagtacccagacccaggcaaaa 453  Q
     | ||||||||| ||||||| ||||||    
T  42234093 atatatagtacctagacccacgcaaaa 42234067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 191 - 235
Target Start/End: Original strand, 5112379 - 5112423
Alignment:
Q  191 attttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    ||||||||| ||||||| | || ||||||||||||||||||||||    
T  5112379 attttttaagtcactcacactcacaatgaatcctaagagaaaaca 5112423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 283 - 411
Target Start/End: Original strand, 25784925 - 25785052
Alignment:
Q  283 aaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaacttttagcctttaagttccctcaaagttttctcatttgatttgtca 382  Q
    |||||||||| ||| |||||| | | ||||||||||||||| ||| ||||||||||||||| || |||||||| | |||||| |||||| |  ||| |||    
T  25784925 aaggtgtttgagaaatgtttcccgacccaagaatctcacctaaaa-acactcaacttttagactctaagttccttaaaagttctctcatctagtttttca 25785023  T
Q  383 agattctctctcttaaaactactaaaaaa 411  Q
    | ||||| |||||| || | |||||||||    
T  25785024 atattctttctcttgaagccactaaaaaa 25785052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 33030920 - 33030854
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaa 232  Q
    |||||||||| | ||||||||| |||||||| || ||||||| | || |||||||||||||||||||    
T  33030920 aaagaacaaaacataatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaa 33030854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 34842608 - 34842665
Alignment:
Q  53 gtttacctagtttagacaaatttatcctacatttgagggagatagccactctctaatc 110  Q
    ||||||| ||||| || ||||||||||||||||||||||||| |||  ||||||||||    
T  34842608 gtttacccagtttggataaatttatcctacatttgagggagagagcagctctctaatc 34842665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 238
Target Start/End: Original strand, 3651617 - 3651689
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaaga 238  Q
    |||||||||||| ||||||||| |||||||| || |||||||||     |||||||||||||| |||||||||    
T  3651617 aaagaacaaaccctaatttctacccatttttcaagtcactcaaacctataatgaatcctaagataaaacaaga 3651689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 28832387 - 28832443
Alignment:
Q  179 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  28832387 taatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 28832443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 35397626 - 35397694
Alignment:
Q  164 ataaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaa 233  Q
    ||||||||||||||| ||||||||||||||||| || |||| || | || ||||||||||||||||||||    
T  35397626 ataaagaacaaacct-aatttctatccatttttcaagtcacccacaatctcaatgaatcctaagagaaaa 35397694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 44731945 - 44732001
Alignment:
Q  27 tagagaaaaccaacacaccaatatccgtttacctagtttagacaaatttatcctaca 83  Q
    ||||||||||||||||| ||||||  ||||||||||||  |||||||||||||||||    
T  44731945 tagagaaaaccaacacatcaatatttgtttacctagttcggacaaatttatcctaca 44732001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 44732088 - 44732140
Alignment:
Q  186 tatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaaga 238  Q
    |||| |||||||||||||||||||  | |||||||||||||||||||||||||    
T  44732088 tatctattttttaaatcactcaaacccacaatgaatcctaagagaaaacaaga 44732140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 28770754 - 28770685
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    |||||||||||  ||||||||| |||||||| || |||  || | |||||||||||||||||||||||||    
T  28770754 aaagaacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaaca 28770685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 2869659 - 2869603
Alignment:
Q  179 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    ||||||||| |||||||| || |||| || | || ||||||||||||||||||||||    
T  2869659 taatttctacccatttttcaagtcacccacactctcaatgaatcctaagagaaaaca 2869603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 918460 - 918389
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatc-actcaaagtcgcaatgaatcctaagagaaaacaa 236  Q
    |||||||||||| ||||||||| |||||||| || || |||||||  | |||||||||||||||||||||||    
T  918460 aaagaacaaaccataatttctacccatttttcaattccactcaaacccacaatgaatcctaagagaaaacaa 918389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 6068340 - 6068290
Alignment:
Q  324 caaagacactcaacttttagcctttaagttccctcaaagttttctcatttg 374  Q
    ||||||| |||||||||||||||||||||||||| |||||| |||| ||||    
T  6068340 caaagaccctcaacttttagcctttaagttccctaaaagttctctcctttg 6068290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 35109517 - 35109450
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaa 233  Q
    |||||||||||||||||||||| ||| |||| || |||| || | || |||||||||||| |||||||    
T  35109517 aaagaacaaaccttaatttctacccaattttcaagtcacacacactcacaatgaatcctacgagaaaa 35109450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 32736978 - 32736908
Alignment:
Q  164 ataaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaac 234  Q
    |||||||||||||| ||||||||| |||||||| || |||   | | || |||||||||||||||||||||    
T  32736978 ataaagaacaaaccctaatttctacccatttttcaagtcatcgacactcacaatgaatcctaagagaaaac 32736908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 17345499 - 17345430
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    |||||||||| | ||||||||| ||||||||||| |||| || | ||  |||||||| ||||||||||||    
T  17345499 aaagaacaaaacctaatttctacccattttttaagtcacccacactcttaatgaatcttaagagaaaaca 17345430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 235
Target Start/End: Original strand, 32889570 - 32889626
Alignment:
Q  179 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  32889570 taatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 32889626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 9054817 - 9054748
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    ||||||||||   ||||||||| |||||||| || ||||||| | || ||||||||||||||||||||||    
T  9054817 aaagaacaaaatctaatttctacccatttttcaagtcactcacactctcaatgaatcctaagagaaaaca 9054748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 180 - 236
Target Start/End: Original strand, 6366636 - 6366692
Alignment:
Q  180 aatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaacaa 236  Q
    |||||||||||| |||| || ||||||||| |  |||||||||||||||||||||||    
T  6366636 aatttctatccacttttcaattcactcaaactaacaatgaatcctaagagaaaacaa 6366692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 453
Target Start/End: Original strand, 11772235 - 11772307
Alignment:
Q  381 caagattctctctcttaaaactactaaaaaattgaagattgaaagcttttatagtacccagacccaggcaaaa 453  Q
    |||||||||||||||| || | ||||||||| |||||| | ||  ||| ||||||| ||||||||||||||||    
T  11772235 caagattctctctcttgaagcgactaaaaaaatgaagaataaagtcttatatagtatccagacccaggcaaaa 11772307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 359
Target Start/End: Original strand, 37043664 - 37043883
Alignment:
Q  142 caagaacttaggtctcaagctgataaagaacaaacc---ttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaa-caag 237  Q
    |||||| |||| ||||||||| | ||||||||||||   ||||||| || |||||||| || |||||||||  |||||||||| |||| |||||| |||     
T  37043664 caagaaattagatctcaagctcacaaagaacaaacccagttaattt-tacccatttttcaagtcactcaaacccgcaatgaatactaatagaaaaacaaa 37043762  T
Q  238 aaatgaagnnnnnnnnatcctttctctgatgagatctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaac 337  Q
    | || |||        ||  || |||| |||| |||| || ||| ||||||||||| || |||||  |  |||||||||||||| |||||||||||||||    
T  37043763 agataaagtttttttgatttttcctctaatgaaatctcaccatccaaggtgtttgtcaagtgttttccggtccaagaatctcac-tcaaagacactcaac 37043861  T
Q  338 ttttagcctttaagttccctca 359  Q
      |||| || ||||||||||||    
T  37043862 ccttagactctaagttccctca 37043883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 3051237 - 3051303
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaa 232  Q
    |||||||||| ||||||||||| |||||||| |  ||||| | | || |||||||||||||||||||    
T  3051237 aaagaacaaaacttaatttctacccatttttcatgtcacttacactctcaatgaatcctaagagaaa 3051303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 19752360 - 19752304
Alignment:
Q  179 taatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  19752360 taatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 19752304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 235
Target Start/End: Original strand, 31936695 - 31936763
Alignment:
Q  167 aagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    ||||||||| | ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  31936695 aagaacaaatcctaatttctacccatttttcatatcacccacactctcaatgaatcctaagagaaaaca 31936763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 235
Target Start/End: Complemental strand, 1115080 - 1115015
Alignment:
Q  170 aacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    |||||||| |||||||||||||||||| || |||| || | || ||||||||  ||||||||||||    
T  1115080 aacaaaccctaatttctatccatttttcaagtcacccacactcacaatgaatattaagagaaaaca 1115015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 336
Target Start/End: Original strand, 37387632 - 37387701
Alignment:
Q  266 atgagatctgactatcaaaggtgtttgtgaattgtttcacaatccaagaatctcacctcaaagacactcaa 336  Q
    ||||||||| || ||| |||||||||||||| |||||| ||| ||||||||  |||| |||||||||||||    
T  37387632 atgagatctcaccatcgaaggtgtttgtgaagtgtttcccaacccaagaattccacc-caaagacactcaa 37387701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 235
Target Start/End: Complemental strand, 1417460 - 1417391
Alignment:
Q  166 aaagaacaaaccttaatttctatccattttttaaatcactcaaagtcgcaatgaatcctaagagaaaaca 235  Q
    |||||||||  | ||||||||| |||||||| | ||||| || | || ||||||||||||||||||||||    
T  1417460 aaagaacaagtcctaatttctacccatttttcatatcacccacactcccaatgaatcctaagagaaaaca 1417391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University