View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_low_6 (Length: 537)
Name: NF18114_low_6
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 501; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Complemental strand, 6394351 - 6393843
Alignment:
| Q |
19 |
tttcgtacttgcttctgcatgtctgctctgagtgttctgttttgaccttggacaattgcttctccaattgaattaagaaaataataaatagtaagagtga |
118 |
Q |
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| T |
6394351 |
tttcgtacttgcttctgcatgtctgctctgagtgttctgttttgaccttggacaattgcttctccaattgaattaagaaaataagaaatagtaagagtga |
6394252 |
T |
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| Q |
119 |
agctctccttcaagtttctactcaattcatagctcaacctcctaagtcctaactacttggactactcttatacctattattctatattttaactggtacc |
218 |
Q |
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| T |
6394251 |
agctctccttcaagtttctactcaattcatagctcaacctcctaagtcctaactacttggactactcttatacctattattctatattttaactggtacc |
6394152 |
T |
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| Q |
219 |
tgacattttaatggagtgattacataagtgttgctatacactgatatgtcccacttttatttttatttatgatttgtgaatgtgaaaatgtggagtttga |
318 |
Q |
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| T |
6394151 |
tgacattttaatggagtgattacataagtgttgctatacactgatatgtcccacttttatttttatttatgatttgtgaatgtgaaaatgtggagtttga |
6394052 |
T |
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| Q |
319 |
aaatataacaatcttcattgagactattggatttggctttattcttgttggtgttttttctctgataaattgtcagttttatttaaatctttacatgtta |
418 |
Q |
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| T |
6394051 |
aaatataacaatcttcattgagactattggatttggctttattcttgttggtgttttttctctgataaattgtcagttttatttaaatctttacatgtta |
6393952 |
T |
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| Q |
419 |
gtgaagttatcgtcttgattttgtttctttgtgaaaaatactatgtatgatatttcggatgggtcattcctgcctcttttaaaatgagataagaatctaa |
518 |
Q |
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| T |
6393951 |
gtgaagttatcgtcttgattttgtttctttgtgaaaaatactatgtatgatatttcggatgtgtcattcctgcctcttttaaaatgagataagaatctaa |
6393852 |
T |
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| Q |
519 |
tgatgatgt |
527 |
Q |
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| T |
6393851 |
tgatgatgt |
6393843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 6425843 - 6425794
Alignment:
| Q |
49 |
agtgttctgttttgaccttggacaattgcttctccaattgaattaagaaa |
98 |
Q |
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| T |
6425843 |
agtgttttgttttgaccttggacaattgcttctccaattgaattaagaaa |
6425794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 357
Target Start/End: Original strand, 8914492 - 8914644
Alignment:
| Q |
220 |
gacattttaatggagtgattacataagtgttgctatacactgatatgtcccact------tttatttttattt-atgatttgtgaatgtgaaaatgtgga |
312 |
Q |
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| T |
8914492 |
gacattttaatggagtggttacatacgagctgctatacaccgatatgtgtcagtattcattttatttttgtttcatgatttgtgaatgtaaaaatgagga |
8914591 |
T |
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| Q |
313 |
--------gtttgaaaatataacaatcttcattgagactattggatttggctt |
357 |
Q |
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| T |
8914592 |
atttattggtttgaaaatataataatcttcattgagactattggatttggctt |
8914644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 221 - 308
Target Start/End: Original strand, 8914105 - 8914199
Alignment:
| Q |
221 |
acattttaatggagtgattacataagtgttgctatacactgatatgtcccac------ttttatttttattt-atgatttgtgaatgtgaaaatg |
308 |
Q |
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| T |
8914105 |
acattttaatggagtgattacatacgagctgctatacactgatatgtgccactatttattttatttttgtttcatgatttgtgaatgtgaaaatg |
8914199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 371 - 462
Target Start/End: Complemental strand, 14819567 - 14819477
Alignment:
| Q |
371 |
gttttttctctgataaattgtcagttttatttaaatctttacatgttagtgaagttatcgtcttgattttgtttctttgtgaaaaatactat |
462 |
Q |
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| T |
14819567 |
gttttttc-ctgataaattggcggttttattgaaatctttacatgttagtaactttattttcttcattttgtttctttgtaaaaaatactat |
14819477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 84
Target Start/End: Complemental strand, 14819943 - 14819886
Alignment:
| Q |
27 |
ttgcttctgcatgtctgctctgagtgttctgttttgaccttggacaattgcttctcca |
84 |
Q |
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| T |
14819943 |
ttgcgtctgcatgtctaccctgagtgttctgttttgaccttaggttattgcttctcca |
14819886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 404 - 462
Target Start/End: Original strand, 15092743 - 15092801
Alignment:
| Q |
404 |
aatctttacatgttagtgaagttatcgtcttgattttgtttctttgtgaaaaatactat |
462 |
Q |
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| T |
15092743 |
aatctttacatgttagtaaagttattgtcttgattttgtttctttatgaaaaatactat |
15092801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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