View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_low_8 (Length: 417)
Name: NF18114_low_8
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_low_8 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 203 - 417
Target Start/End: Complemental strand, 51122681 - 51122466
Alignment:
| Q |
203 |
tgatcttagttttattagtggcatcaatagttagagacaagtgnnnnnnnnnagtggtttagagacaaatgttaatcagtacccttaaaacatgacttaa |
302 |
Q |
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| T |
51122681 |
tgattttagttttattagtggcatcaatagttagagacaagtgtttttttttaggggtttagagacaaatgttaatcagtacccttaaaacatgacttaa |
51122582 |
T |
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| Q |
303 |
gggataagaaaataaaaattattaaaact-ccaagatttttcttaaatttcaggatttcttaacaaatatttcgaaggaattgattagtactgtgctagt |
401 |
Q |
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| T |
51122581 |
gggataagaaaataaaaattattaaaactcccaagatttttcttaaatttcaggatttcttaacaaatatttcgaatgaattgattagtactgtgctagt |
51122482 |
T |
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| Q |
402 |
gatcacgatgtttgaa |
417 |
Q |
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| T |
51122481 |
tgtcaagatgtttgaa |
51122466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 14 - 172
Target Start/End: Complemental strand, 51122869 - 51122711
Alignment:
| Q |
14 |
agatcattagcgatccagacggcaatgcaattctttctaggaaatgtgaacttcaagacaatgttgtcatttctaccttcaactccaagaagcaacaata |
113 |
Q |
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| T |
51122869 |
agatcattagggatccagacgccaatgcaattctttcaaggaaatgtgaacttcaagacaatgttgtcgtttctaccttcaactccaagaagcaacaata |
51122770 |
T |
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| Q |
114 |
aaaatggagtaacctaacctgcaatggtgttatattatatttttcaggactaccacttc |
172 |
Q |
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| T |
51122769 |
aaaatggagtaacctaacctgcaatggtgttatattatatttttcaggactaccacttc |
51122711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 50123438 - 50123327
Alignment:
| Q |
14 |
agatcattagcgatccagacggcaatgcaattctttctaggaaatgtgaacttcaagacaatgttgtcatttctaccttcaactccaagaagcaacaata |
113 |
Q |
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| T |
50123438 |
agatcattagcgatccagacgccaacgccacgctttcaaggaaatgtgaatttcaagacaatgttgtcattgctaccttcaactccaagaagcagcaatg |
50123339 |
T |
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| Q |
114 |
aaaatggagtaa |
125 |
Q |
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| T |
50123338 |
gaaatggagtaa |
50123327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 261 - 393
Target Start/End: Complemental strand, 50123254 - 50123117
Alignment:
| Q |
261 |
ttagagacaaatgttaatcagtacccttaaaacatgacttaagggat-------aagaaaataaaaattattaaaactcc-aagatttttcttaaatttc |
352 |
Q |
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| T |
50123254 |
ttagcgacaaatgttaatcagtacccttaaaataaggcttaagggattaaaagaaagaaaataaaaattattaaaactcccaagatttttcttaaatttc |
50123155 |
T |
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| Q |
353 |
aggatttcttaacaaatatttcgaaggaattgattagtact |
393 |
Q |
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| T |
50123154 |
aggattttttaacaaagatt---aagcaattgattagtact |
50123117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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