View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18114_low_9 (Length: 416)
Name: NF18114_low_9
Description: NF18114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18114_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 40518287 - 40517983
Alignment:
| Q |
18 |
tcaaactagcaagggagaaattacggacatgggatgatcctggcatattatcatcaatatatatgcgcacgttagattatttaattttcaattgtataag |
117 |
Q |
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| T |
40518287 |
tcaaactagcaagggaaaaattacggacatgggatgatcctggcatattatcatcaatatatatgcgcacattagattatttaattttcaattgtataag |
40518188 |
T |
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| Q |
118 |
atagttcgggtctcatctattttaactagttatggaaccagatttaactactagtcgtgagaggaatttttcatggtatattataactctatccaactcg |
217 |
Q |
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| T |
40518187 |
atagttcgggtctcatctattttaactagttatggaaccagatttaactactagtcgtgagaggaatttttcatcgtatattataactctatccaactcg |
40518088 |
T |
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| Q |
218 |
agatattagtatttatagatgcaggagagcatatcctatttcgtaaattatagtattaaggaggaattaaatcattggctgcggatgataaaggcaaggc |
317 |
Q |
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| T |
40518087 |
agatattagtatttatagatgcaagagagcatatcctatttcgtaaattatagtattaaggaggaattaattcattggctgcggatgataaaggcaaggc |
40517988 |
T |
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| Q |
318 |
aatta |
322 |
Q |
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| T |
40517987 |
aatta |
40517983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 313 - 400
Target Start/End: Complemental strand, 40517425 - 40517338
Alignment:
| Q |
313 |
aaggcaattatatatggtgtcaacgtttatgatatgctctcggaattaattacatatatgctctcgcaattacacccatgatggagtg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
40517425 |
aaggcaattatatatggtgtcaacgtttatgatatgctctcggaattaattaaatatatgatctcgcaattacacccatgatggagtg |
40517338 |
T |
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