View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_high_12 (Length: 377)
Name: NF18115_high_12
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 277
Target Start/End: Original strand, 35846661 - 35846919
Alignment:
| Q |
17 |
catcagagaataattcagttgatcaatctctcaagaattcttctgttatgtatgtgatcaatatataaccttggaagtgaagtaatagagggacacatct |
116 |
Q |
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| T |
35846661 |
catcagagaataattcagttgatcaatctctcaagaattcttctgttatgtatgtgatcaatatataaccttggaagtgaagtaataga--gacacatct |
35846758 |
T |
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| Q |
117 |
tcatcttgaatggtttgtatttaagaagaaacttctttgcttttgttttcttcagcaagtcttaatcatagtttatatatatat-ccctcaatatctcta |
215 |
Q |
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| T |
35846759 |
tcatcttgaatggtttgtatttaagaagaaacttctttgcttttg-tttcttcagcaagtcttaatcatagtttatatatatatcccctcaatatctcta |
35846857 |
T |
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| Q |
216 |
tcttcatggtattctttcctttccaccaatatcccttttatgttcattttgatcataatcat |
277 |
Q |
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| T |
35846858 |
tcttcatggtattctttcctttccaccaatatcccttttatgttcattttgatcataatcat |
35846919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 274 - 368
Target Start/End: Original strand, 35846942 - 35847036
Alignment:
| Q |
274 |
tcattttgattataattaaaataatccatctaatatttgttatcttatgtaactttatatttataatttaattttttctacaacttgttgatgat |
368 |
Q |
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| T |
35846942 |
tcattttgattataattaaaataatccatctaatatttgttatcttatgtaactttatatttataatttaattttttctacaacttgttgatgat |
35847036 |
T |
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