View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_high_17 (Length: 252)
Name: NF18115_high_17
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 42157455 - 42157680
Alignment:
| Q |
16 |
gttttttggcctgataatgcaatagccttcatgaaagcatcaatctcagggtctggtttaattccagcttctctctcccttcttgagagttctgtcaaca |
115 |
Q |
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| T |
42157455 |
gttttttggcctgataatgcaatagccttcatgaaagcatcaatctcagggtctggtttaattccagcttctctctcccttcttgagagttctgtcaaca |
42157554 |
T |
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| Q |
116 |
tttcatatctactgccaacacctagacaacgtgatgaaaaatctaaagtctctctcactgtaatttctccgtagtgaatgtcatgctgactaatataggc |
215 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42157555 |
tttcatatctactgccaacgcctagacaacgtgatgaaaaatctaaagtctctctcactgtaatttctccgtagtgaatgtcatgctgactaatataggc |
42157654 |
T |
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| Q |
216 |
acaagtttttgcagcaacgaattcat |
241 |
Q |
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|||||||||||||||||||||||||| |
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| T |
42157655 |
acaagtttttgcagcaacgaattcat |
42157680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 241
Target Start/End: Original strand, 42145502 - 42145724
Alignment:
| Q |
19 |
ttttggcctgataatgcaatagccttcatgaaagcatcaatctcagggtctggtttaattccagcttctctctcccttcttgagagttctgtcaacattt |
118 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| |
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| T |
42145502 |
ttttggcctgataatacaacagccttcatgaaagcatcaatctcagggtctggtttaattccagcttctctctctctttttgagagttctttcaacattt |
42145601 |
T |
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| Q |
119 |
catatctactgccaacacctagacaacgtgatgaaaaatctaaagtctctctcactgtaatttctccgtagtgaatgtcatgctgactaatataggcaca |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
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| T |
42145602 |
catacctactgccaacacctagacaacgtgatgaaaaatctaaagtctctctcactgtcatttctccatagtggatgtcatgctgactaatataggcaca |
42145701 |
T |
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| Q |
219 |
agtttttgcagcaacgaattcat |
241 |
Q |
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|||||||||||| |||||||||| |
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| T |
42145702 |
agtttttgcagcgacgaattcat |
42145724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 42176679 - 42176904
Alignment:
| Q |
16 |
gttttttggcctgataatgcaatagccttcatgaaagcatcaatctcagggtctggtttaattccagcttctctctcccttcttgagagttctgtcaaca |
115 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||||| |||| | |
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| T |
42176679 |
gttttttggcctgataatgcaatggccttcatgaaagcatcaatctcagggtctggtttaattcctgcatctttctcccttcttgagagttccatcaata |
42176778 |
T |
|
| Q |
116 |
tttcatatctactgccaacacctagacaacgtgatgaaaaatctaaagtctctctcactgtaatttctccgtagtgaatgtcatgctgactaatataggc |
215 |
Q |
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|||||| || |||||||||||||||||| |||||||||||| || ||||||||||| ||| |||||| ||||||||||||||||||||||||||| || |
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| T |
42176779 |
attcataccttgtgccaacacctagacaacatgatgaaaaatccaatgtctctctcaccgtattttctctgtagtgaatgtcatgctgactaatatatgc |
42176878 |
T |
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| Q |
216 |
acaagtttttgcagcaacgaattcat |
241 |
Q |
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||| ||||||| |||||||||||||| |
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| T |
42176879 |
acacgtttttgtagcaacgaattcat |
42176904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 40 - 241
Target Start/End: Original strand, 42136220 - 42136421
Alignment:
| Q |
40 |
gccttcatgaaagcatcaatctcagggtctggtttaattccagcttctctctcccttcttgagagttctgtcaacatttcatatctactgccaacaccta |
139 |
Q |
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||||||||||| |||||||||| ||||||||| |||||||| ||| || ||||||||||| | ||||| |||||||||||| || | ||||| |||| |
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| T |
42136220 |
gccttcatgaatgcatcaatctgagggtctggcttaattcccgctcctttctcccttcttaaaagttcctccaacatttcataccttgttccaacgccta |
42136319 |
T |
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| Q |
140 |
gacaacgtgatgaaaaatctaaagtctctctcactgtaatttctccgtagtgaatgtcatgctgactaatataggcacaagtttttgcagcaacgaattc |
239 |
Q |
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||| ||| |||||||||||| | ||||||||| || |||||||| || |||| |||||| | || |||||||||||| ||| || |||||| ||||| |
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| T |
42136320 |
aacagcgtcctgaaaaatctaatgactctctcaccgtcatttctccataatgaaggtcatgttcaccaatataggcacatgttcttctagcaacaaattc |
42136419 |
T |
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| Q |
240 |
at |
241 |
Q |
| |
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|| |
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| T |
42136420 |
at |
42136421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 43526271 - 43526189
Alignment:
| Q |
43 |
ttcatgaaagcatcaatctcagggtctggtttaattccagcttctctctcccttcttgagagttctgtcaacatttcatatct |
125 |
Q |
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|||||||||||||| || ||||| |||||||| || || |||||| | || | |||||| | |||||||||||| |||||||| |
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| T |
43526271 |
ttcatgaaagcatctatttcaggatctggtttgatacctgcttctttttcgcgtcttgacaattctgtcaacatgtcatatct |
43526189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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