View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_high_19 (Length: 244)
Name: NF18115_high_19
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 76 - 227
Target Start/End: Original strand, 31065154 - 31065305
Alignment:
| Q |
76 |
aaaagaataagtcaccaatttctgttaccaataaaagaaacttgaaaccttatacttaagacataaatctaaaaaatatatcaaaatcaaatataggatc |
175 |
Q |
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| T |
31065154 |
aaaagaataagtcaccaatttctgttatcaataagagaaacttgaaaccttatacttaagacataaatctaaaaaatatatcaaaatcaaatataggatc |
31065253 |
T |
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| Q |
176 |
gatgattcatacaccaatccaaagaaaggtacacaaggttccctatcctatc |
227 |
Q |
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| T |
31065254 |
gatgattcatacaccaatccaaagaaaggtacacaaggttccctatcctatc |
31065305 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31065077 - 31065117
Alignment:
| Q |
1 |
cctcaccagaaatgagaatataagaaataaactaaatttga |
41 |
Q |
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| T |
31065077 |
cctcaccagaaatgagaatataagaaataaactaaatttga |
31065117 |
T |
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