View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_high_2 (Length: 698)
Name: NF18115_high_2
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 15 - 337
Target Start/End: Original strand, 34431897 - 34432204
Alignment:
| Q |
15 |
attctgaacgcgaataggttaacttttgaagtgaatccaaataatgcatagttaaagcgatttaatcggttgaaaatgaagaaattgaagaaaactaaag |
114 |
Q |
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| T |
34431897 |
attctgaacgcgaataggttaacttttgaagtgaatccaaataatgcacagttaaagcgatttaatcggttgaaaatgaagaaattgaagaaaactaaag |
34431996 |
T |
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| Q |
115 |
tgtgaagaaattgaagttagtgattcaaacgatagagttgaaaatcgaaacgcgcattgagaaatgatcggaagagaagaagcaggttaccattacggcg |
214 |
Q |
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| T |
34431997 |
tgtgaagaaattgaagttagtgattcaaacgatagagttgaaaatcgaaatgcgcattgagaaatgatcggaagagaagaagcaggttaccattacggcg |
34432096 |
T |
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| Q |
215 |
gcgacgacggcggtgatggaagattctagaaacgtgattctctgctttttagcgggaaaatggtggaagatannnnnnncccctctttttataagaaaaa |
314 |
Q |
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| T |
34432097 |
gcgac------------ggaagattctagaaacgtgattctctgctttttagcgggaaaatggtggaagatatttttt--ccct-tttttataagcaaaa |
34432181 |
T |
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| Q |
315 |
cgacaccgtagtgaactatcttc |
337 |
Q |
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| T |
34432182 |
cgacaccgtagtgaactatcttc |
34432204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 400 - 682
Target Start/End: Original strand, 34432268 - 34432553
Alignment:
| Q |
400 |
cacgtgtcattaatcatttttactgctttgttaacnnnnnnn---tggtactactgttaaacacttttggaatctatgtattgtaatattttccacnnnn |
496 |
Q |
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| T |
34432268 |
cacgtgtcattaatcatttttactgctttgttaacaaaaaaaaaatggtactactgttaaacacttttggaatctatgtattgtaatattttcctcaaaa |
34432367 |
T |
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| Q |
497 |
nnntgtattgtaattttgaaaatgttttgcatttttggttaataaaataattaaagtggttaatgaaatttatattttaaaagtagtaaacaaggtatat |
596 |
Q |
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| T |
34432368 |
aaatgtattgtaattttgaaaatgttttgcatttttggttaataaaataattaaagtggttaatgaaatttatattttaaaagtagtaaacaaggtatat |
34432467 |
T |
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| Q |
597 |
tttgttggttaatgcaactgtaagattagttgaattcaacacttttcatcgtttttcaataaatttacttataaaggattgagtat |
682 |
Q |
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| T |
34432468 |
tttgttggttaatgcaactgtaagattagttgaattcaacacttttcatcatttttcaataaatttacttataaaggattgagtat |
34432553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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