View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18115_high_3 (Length: 664)

Name: NF18115_high_3
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18115_high_3
NF18115_high_3
[»] chr3 (1 HSPs)
chr3 (12-648)||(49922984-49923622)


Alignment Details
Target: chr3 (Bit Score: 582; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 582; E-Value: 0
Query Start/End: Original strand, 12 - 648
Target Start/End: Original strand, 49922984 - 49923622
Alignment:
Q  12 catcatctatatgactgtttatgaaatgaattcactataaaaagataccttcaaataagaaaaatatcccaaaacatgttatttgtttgttatgataaca 111  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49922984 catcatatatatgactgcttatgaaatgaattcactataaaaagatatcttcaaataagaaaaatatcccaaaacatgttatttgtttgttatgataaca 49923083  T
Q  112 aaaatgtttcagagattgaaaattgttacaaatttacatattttggatagagtgtatgcattgctgagcttatatgtctcctcacagattgatggcgaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49923084 aaaatgtttcagagattgaaaattgttacaaatttacatattttggatagagtgtatgcattgctgagcttatatgtctcctcacagattgatggcgaac 49923183  T
Q  212 cttactggtattatgaatacctcattcgtaaatcgcctaattcaatggtaagtatttcctcttggtgcattttcttttcttaaggaagttgtggtgt-tg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  49923184 cttactggtattatgaatacctcattcgtaaatcgcctaattcaatggtaagtatttcctcttggtgcattttcttttcttaaggaagttgtggtgtatg 49923283  T
Q  311 tgatttttactttggacttgttactgatggttgtacagtctgaagaatcaggaatttaccggcattatgttgcttcaacagcagaaagagatggtatacc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49923284 tgatttttactttggacttgttactgatggttgtacagtctgaagaatcaggaatttaccggcattatgttgcttcaacagcagaaagagatggtatacc 49923383  T
Q  411 ctctcatattattcctactttagtattgcaaacatgcatgtataga-taccttgtgcattctaatgtgaatttatcctctgcataatattgtttgaaagc 509  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49923384 ctctcaaattattcctactttagtattgcaaacatgcatgtatagattaccttgtgcattctaatgtgaatttatcctctgcataatattgtttgaaagc 49923483  T
Q  510 tcttgttggaaataannnnnnngcctcttcccttcaatcagagtcatacttgttccagaaataaaaggaaagatccaaaggaagaaaataaggctaaaaa 609  Q
    |||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  49923484 tcttgttggaaataatttttttgcctcttcccttcaatcagagtcatacttgttccagaaataaaaggaaagatccaaaggaagaaaataaggctaaaca 49923583  T
Q  610 caataatatttgtattgctatagctttttagaaattaac 648  Q
    |||||||||||||||||||||||||||||||||||||||    
T  49923584 caataatatttgtattgctatagctttttagaaattaac 49923622  T

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