View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18115_high_5 (Length: 548)

Name: NF18115_high_5
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18115_high_5
NF18115_high_5
[»] chr5 (5 HSPs)
chr5 (1-338)||(37160706-37161044)
chr5 (493-530)||(37160673-37160710)
chr5 (271-328)||(38504120-38504177)
chr5 (271-326)||(421787-421842)
chr5 (296-328)||(24127323-24127355)
[»] chr4 (4 HSPs)
chr4 (403-478)||(28836420-28836495)
chr4 (295-328)||(1338304-1338337)
chr4 (276-328)||(41128-41180)
chr4 (290-330)||(41684777-41684817)
[»] chr7 (1 HSPs)
chr7 (294-328)||(20228670-20228704)
[»] chr3 (1 HSPs)
chr3 (265-325)||(52017640-52017700)
[»] chr1 (1 HSPs)
chr1 (293-330)||(14462920-14462957)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 37161044 - 37160706
Alignment:
Q  1 attaaaagttgtgatagctttaatttgaatgaattaaaagttgtgacaacccaaagtttttacaaaagtagggagggtgtttcaaaacaaaaggtacgca 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  37161044 attaaaagttgcgatagctttaatttgaatgaattaaaagttgtgacaacccaaagtttttaaaaaagtagggagggtgtttaaaaacaaaaggtacgca 37160945  T
Q  101 taggagcaccttgcacaagggtggcgacaaccccagtttcattctacttggtcagtctttgatctaatacatcaacttttgttgacatgtttgcctcttg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  37160944 taggagcaccttgcacaagggtggcgacaaccccagtttcattctatttggtcagtctttaatctaatacatcaacttttgttgacatgtttgcctcttg 37160845  T
Q  201 taaaaggatcaaagagagtagtttaaaaactagttttcttgtttgg-nnnnnnnnnnnncaatttatttattccctaaactatcattctctcgttaattt 299  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||             ||||||||||||| |||||||||||||||||||||||||||    
T  37160844 taaaaggatcaaagagagtagtttaaaaactagttttctcgtttggaaaaaaacaaaaacaatttatttattacctaaactatcattctctcgttaattt 37160745  T
Q  300 aatctctaaactattaaaatcaactaaaaaagtgcctta 338  Q
    | ||||||||||||||||||||||||||||||| |||||    
T  37160744 agtctctaaactattaaaatcaactaaaaaagtccctta 37160706  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 493 - 530
Target Start/End: Complemental strand, 37160710 - 37160673
Alignment:
Q  493 ccttatattcatttccattgttatgcagtggagatctt 530  Q
    |||||||||||||||||||||||||| |||||||||||    
T  37160710 ccttatattcatttccattgttatgcggtggagatctt 37160673  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 38504177 - 38504120
Alignment:
Q  271 tccctaaactatcattctctcgttaatttaatctctaaactattaaaatcaactaaaa 328  Q
    |||||||||||||||||| |  | || |||||| ||||||||||||||||||||||||    
T  38504177 tccctaaactatcattcttttatcaagttaatccctaaactattaaaatcaactaaaa 38504120  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 421842 - 421787
Alignment:
Q  271 tccctaaactatcattctctcgttaatttaatctctaaactattaaaatcaactaa 326  Q
    |||||||||||||| ||||||   |||||| || ||||||||||||||||||||||    
T  421842 tccctaaactatcactctctcaccaatttagtccctaaactattaaaatcaactaa 421787  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 24127355 - 24127323
Alignment:
Q  296 atttaatctctaaactattaaaatcaactaaaa 328  Q
    ||||| |||||||||||||||||||||||||||    
T  24127355 atttagtctctaaactattaaaatcaactaaaa 24127323  T

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Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 403 - 478
Target Start/End: Original strand, 28836420 - 28836495
Alignment:
Q  403 atgagtttagtggctatcttggtgattccaacaatacttgtgctgagctagctgcaattcttcatgttttaaagct 478  Q
    ||||||||||||| | ||||||||||||||||||||||  ||| ||||||||||||||||||||||  ||||||||    
T  28836420 atgagtttagtggttgtcttggtgattccaacaatactcatgccgagctagctgcaattcttcatggcttaaagct 28836495  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 1338337 - 1338304
Alignment:
Q  295 aatttaatctctaaactattaaaatcaactaaaa 328  Q
    ||||||||| ||||||||||||||||||||||||    
T  1338337 aatttaatccctaaactattaaaatcaactaaaa 1338304  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 328
Target Start/End: Complemental strand, 41180 - 41128
Alignment:
Q  276 aaactatcattctctcgttaatttaatctctaaactattaaaatcaactaaaa 328  Q
    ||||||||| | | |||| |||||| |||||||||| ||||||||||||||||    
T  41180 aaactatcaatttttcgtcaatttagtctctaaactgttaaaatcaactaaaa 41128  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Original strand, 41684777 - 41684817
Alignment:
Q  290 tcgttaatttaatctctaaactattaaaatcaactaaaaaa 330  Q
    |||| |||||| |||||||||||||||||||||| ||||||    
T  41684777 tcgtgaatttagtctctaaactattaaaatcaacaaaaaaa 41684817  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 294 - 328
Target Start/End: Original strand, 20228670 - 20228704
Alignment:
Q  294 taatttaatctctaaactattaaaatcaactaaaa 328  Q
    |||||||||||||||||||||||||||||||||||    
T  20228670 taatttaatctctaaactattaaaatcaactaaaa 20228704  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 265 - 325
Target Start/End: Original strand, 52017640 - 52017700
Alignment:
Q  265 atttattccctaaactatcattctctcgttaatttaatctctaaactattaaaatcaacta 325  Q
    ||||| |||||||||||||||||||||   || ||| || |||||||||||||||||||||    
T  52017640 atttagtccctaaactatcattctctcaacaaattagtccctaaactattaaaatcaacta 52017700  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 330
Target Start/End: Original strand, 14462920 - 14462957
Alignment:
Q  293 ttaatttaatctctaaactattaaaatcaactaaaaaa 330  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  14462920 ttaatttactctctaaattattaaaatcaactaaaaaa 14462957  T

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