View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_high_6 (Length: 502)
Name: NF18115_high_6
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 8 - 337
Target Start/End: Complemental strand, 1042040 - 1041725
Alignment:
| Q |
8 |
atgagatgaacattgtattggaaaaatgtatcttaagaatcacaaaattacgatgatgacttaattatgatgactgtgtttcggcctaacttacaatcac |
107 |
Q |
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| T |
1042040 |
atgacatgagcattgtattggaaaaatgtatcttaagaatcacaaaattacgatgatgact--------------gtgtttccgcctaacttacaatcac |
1041955 |
T |
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| Q |
108 |
tgtaaacatgaacttaattagtcatacaaactcnnnnnnnnnnggtaaagtagtctcatggttgagactcacagtttttaaatataaagaagtggggagt |
207 |
Q |
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| T |
1041954 |
tataaacatgaacttaattagtcatacaaactcttttttttttggtaaagtagtctcgtggttgagactcacagtttttaaatataaagaagtggagagt |
1041855 |
T |
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| Q |
208 |
acgaagtttgaacatcaacctctgtatattatacaatatttctatcaactggattaagctcacaaatgtgcgatctcatttattcaatgtaatcaaacga |
307 |
Q |
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| T |
1041854 |
actaagtttgaacatcgacctctatatattatgcaatatttttatcaactgaattaaactcacaaatatgcgatctcatttatttaatgtaatcaaacga |
1041755 |
T |
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| Q |
308 |
cttttatttaattttgtaaagcgagttcaa |
337 |
Q |
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| T |
1041754 |
cttttatttaattttgtaaagcgagttcaa |
1041725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 335 - 487
Target Start/End: Complemental strand, 1041683 - 1041531
Alignment:
| Q |
335 |
caacaacatgattagtgtatttgcagataatctattgcctcaattatttagaatttagaggcttagctacttggtatgcctgctctctacatacgatata |
434 |
Q |
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| T |
1041683 |
caacaacatgattagtgtatttgcagataatctattgcctcaattatttagaatttagaggcttagctacttggtatgcatgctctctacatatgatata |
1041584 |
T |
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| Q |
435 |
cacattgacatgttagtaggaactatctaaaataaaaactgtatgtctaaaat |
487 |
Q |
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| T |
1041583 |
cacattgacatgttagtaggaactatctaaaataaaaactgcatgtctaaaat |
1041531 |
T |
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