View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18115_low_11 (Length: 449)

Name: NF18115_low_11
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18115_low_11
NF18115_low_11
[»] chr2 (9 HSPs)
chr2 (13-433)||(965515-965945)
chr2 (166-392)||(974947-975170)
chr2 (13-119)||(974061-974167)
chr2 (253-392)||(820786-820925)
chr2 (190-275)||(1399275-1399360)
chr2 (338-391)||(409670-409723)
chr2 (190-275)||(1402970-1403055)
chr2 (17-64)||(982134-982181)
chr2 (177-274)||(409781-409878)
[»] chr3 (1 HSPs)
chr3 (13-122)||(45810536-45810645)
[»] chr6 (1 HSPs)
chr6 (13-56)||(10116797-10116840)


Alignment Details
Target: chr2 (Bit Score: 342; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Original strand, 965515 - 965945
Alignment:
Q  13 tagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcactaaccaagtcaaattgttgaacgtaggaaagtcataagggtgataaac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  965515 tagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcaataaccaagtcaaattgttgaacgtaggaaagtcataagggtgataaac 965614  T
Q  113 ctaaattatacnnnnnnn--gacagtattataaactatctaacattgtgttaaa--------aattctatgataaaacatacctcgtatagttgtatgta 202  Q
    |||||||||||         |||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||     
T  965615 ctaaattatacaaaaaaaaagacagtattataaactatctaacattgtgttctttctcattcaattctatgataaaacatacctcgtatagttgtatgtg 965714  T
Q  203 taaaaattccaaatttgaaagtgatttcaccggaaaatagcattcacggtcggtaatatctgctctgttcaactttcttagcattgagctgtttttaaag 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  965715 taaaaattccaaatttgaaagtgatttcaccggaaaatagcattcacagtcggtaatatctgctctgttcaactttcttagcattgagctgttttcaaag 965814  T
Q  303 tcatcaaaagaatgatgagtgtaacatatgaagaagtttatgttagatagttgaaggtcttcaagaactggacatccatctacaagcatccatctgaaga 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  965815 tcatcaaaagaatgatgagtgtaacatatgaagaagtttatgttagatagttgaaggtcttcaagaactggacatccatctacaagcatccatctgaaga 965914  T
Q  403 actgtacgttagatagttgatcaaagtaaat 433  Q
    |||||||||||||||||||||||||||||||    
T  965915 actgtacgttagatagttgatcaaagtaaat 965945  T

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Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 166 - 392
Target Start/End: Original strand, 974947 - 975170
Alignment:
Q  166 attctatgataaaacatacctcgtatagttgtatgtataaaaattccaaatttgaaagtgatttcaccggaaaatagcattcacggtcggtaatatctgc 265  Q
    ||||||||||||||||||||||| |||||| ||||  || ||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  974947 attctatgataaaacatacctcggatagttttatgcgtagaaactccaaatttgaaagtgatttcaccggaaaatagcattcacagtcagtaatatctgc 975046  T
Q  266 tctgttcaactttcttagcattgagctgtttttaaagtcatcaaaagaatgatgagtgtaacatatgaagaagtttatgttagatagttgaaggtcttca 365  Q
    ||||||||| ||| ||| |||||||||| ||| ||||||||||| |||||||||| | | || | |    | || ||| | | |||||||||| ||||||    
T  975047 tctgttcaatttttttaacattgagctgctttcaaagtcatcaagagaatgatgactctgacgtgt---catgtatatataacatagttgaagatcttca 975143  T
Q  366 agaactggacatccatctacaagcatc 392  Q
    ||||||||||||||||||| |||||||    
T  975144 agaactggacatccatctagaagcatc 975170  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 974061 - 974167
Alignment:
Q  13 tagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcactaaccaagtcaaattgttgaacgtaggaaagtcataagggtgataaac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  974061 tagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcactaaccaagtcaaattgttgaacgtaggaaagtcacgagggtgataaac 974160  T
Q  113 ctaaatt 119  Q
    |||||||    
T  974161 ctaaatt 974167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 253 - 392
Target Start/End: Complemental strand, 820925 - 820786
Alignment:
Q  253 cggtaatatctgctctgttcaactttcttagcattgagctgtttttaaagtcatcaaaagaatgatgagtgtaacatatgaagaagtttatgttagatag 352  Q
    |||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||| ||| | ||||||||| |   |||    |||| ||||||||    
T  820925 cggtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaactttccaagtttattatattagatag 820826  T
Q  353 ttgaaggtcttcaagaactggacatccatctacaagcatc 392  Q
    |||||| ||||| |||||||||||| | |||| |||||||    
T  820825 ttgaagatcttctagaactggacatgcgtctagaagcatc 820786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 1399360 - 1399275
Alignment:
Q  190 atagttgtatgtataaaaattccaaatttgaaagtgatttcaccggaaaatagcattcacggtcggtaatatctgctctgttcaac 275  Q
    |||||||||||  || ||| |||| |||||||||||||||||||  ||||||||| ||| ||||||| ||||||||| ||||||||    
T  1399360 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaatcatggtcggttatatctgctttgttcaac 1399275  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 391
Target Start/End: Complemental strand, 409723 - 409670
Alignment:
Q  338 gtttatgttagatagttgaaggtcttcaagaactggacatccatctacaagcat 391  Q
    |||||| ||||| |||||||| |||| |||||||||||||||||||| ||||||    
T  409723 gtttatattagacagttgaagatcttgaagaactggacatccatctagaagcat 409670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 275
Target Start/End: Complemental strand, 1403055 - 1402970
Alignment:
Q  190 atagttgtatgtataaaaattccaaatttgaaagtgatttcaccggaaaatagcattcacggtcggtaatatctgctctgttcaac 275  Q
    |||||||||||  || ||| |||| |||||||||||||||||||  |||||||||  || | ||||| ||||||||| ||||||||    
T  1403055 atagttgtatgcgtagaaactccacatttgaaagtgatttcaccataaaatagcaaccatgatcggttatatctgctttgttcaac 1402970  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 982134 - 982181
Alignment:
Q  17 gcaatgatggagcacttgaacaactatatcccaatcatagttgagcac 64  Q
    |||||| ||||||||| | |||||||||| ||||||||||||||||||    
T  982134 gcaatggtggagcactcgtacaactatattccaatcatagttgagcac 982181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 409878 - 409781
Alignment:
Q  177 aaacatacctcgtatagttgtatgtataaaaattccaaatttgaaagtgatttcaccggaaaatagcattcacggtcggtaatatctgctctgttcaa 274  Q
    ||||| |||||  ||||||||||   || ||| |||||||||||||| ||||||| |||||||  ||| | ||  ||| |||||||||||||||||||    
T  409878 aaacaaacctccaatagttgtatacgtagaaactccaaatttgaaagcgatttcatcggaaaaatgcaatgacaatcgataatatctgctctgttcaa 409781  T

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Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 45810536 - 45810645
Alignment:
Q  13 tagggcaatgatggagcacttgaacaactatatcccaatcatagttgagcactaaccaagtcaaattgttgaacgtaggaaagtcataagggtgataaac 112  Q
    |||| ||||| || |||||||| ||||||||||||||||||||||||| ||| ||   ||||||||| ||||| |||||||||||||| ||||||||| |    
T  45810536 taggacaatgctgaagcacttgtacaactatatcccaatcatagttgaccaccaaatgagtcaaattattgaatgtaggaaagtcatatgggtgataatc 45810635  T
Q  113 ctaaattata 122  Q
    ||||||||||    
T  45810636 ctaaattata 45810645  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 10116797 - 10116840
Alignment:
Q  13 tagggcaatgatggagcacttgaacaactatatcccaatcatag 56  Q
    |||||||||| ||||||||||| |||||||||||||||||||||    
T  10116797 tagggcaatggtggagcacttgtacaactatatcccaatcatag 10116840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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