View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18115_low_12 (Length: 440)

Name: NF18115_low_12
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18115_low_12
NF18115_low_12
[»] chr3 (44 HSPs)
chr3 (60-424)||(13886096-13886460)
chr3 (1-64)||(31779139-31779202)
chr3 (3-61)||(48452987-48453045)
chr3 (1-61)||(29801903-29801963)
chr3 (3-61)||(20840558-20840616)
chr3 (1-59)||(32535450-32535508)
chr3 (1-59)||(39556064-39556122)
chr3 (3-60)||(39555577-39555634)
chr3 (1-61)||(43973927-43973987)
chr3 (8-62)||(4275858-4275912)
chr3 (3-61)||(24301045-24301103)
chr3 (1-59)||(29801356-29801414)
chr3 (3-60)||(20841050-20841107)
chr3 (1-61)||(5137468-5137528)
chr3 (1-61)||(26837842-26837902)
chr3 (1-61)||(30104480-30104540)
chr3 (1-60)||(31778652-31778711)
chr3 (4-59)||(37727420-37727475)
chr3 (1-59)||(25853234-25853292)
chr3 (3-60)||(23644461-23644518)
chr3 (3-60)||(27393660-27393717)
chr3 (3-60)||(27394066-27394123)
chr3 (1-61)||(17464489-17464549)
chr3 (1-53)||(25612464-25612516)
chr3 (8-64)||(25853721-25853777)
chr3 (1-64)||(5136975-5137038)
chr3 (1-60)||(30098250-30098309)
chr3 (3-62)||(37222060-37222119)
chr3 (1-59)||(23644952-23645010)
chr3 (3-53)||(32534965-32535015)
chr3 (1-59)||(50116896-50116954)
chr3 (1-58)||(51473429-51473486)
chr3 (1-53)||(22425300-22425352)
chr3 (1-53)||(26274573-26274625)
chr3 (1-53)||(41046706-41046758)
chr3 (14-53)||(25420641-25420680)
chr3 (1-60)||(37726928-37726987)
chr3 (15-62)||(45965935-45965982)
chr3 (1-59)||(23228494-23228552)
chr3 (1-63)||(26837356-26837418)
chr3 (14-59)||(43973441-43973486)
chr3 (8-60)||(17464986-17465038)
chr3 (18-62)||(37220554-37220598)
chr3 (1-61)||(51474821-51474881)
[»] chr7 (25 HSPs)
chr7 (1-63)||(35289388-35289450)
chr7 (1-51)||(4478187-4478237)
chr7 (1-59)||(19590525-19590583)
chr7 (1-59)||(35288903-35288961)
chr7 (1-61)||(2658837-2658897)
chr7 (1-61)||(19591012-19591072)
chr7 (1-61)||(38859128-38859188)
chr7 (1-64)||(19830415-19830478)
chr7 (1-60)||(37786766-37786825)
chr7 (8-62)||(34533788-34533842)
chr7 (1-62)||(32004611-32004672)
chr7 (4-61)||(37787257-37787314)
chr7 (5-60)||(19830910-19830965)
chr7 (4-53)||(4641446-4641495)
chr7 (4-60)||(38858642-38858698)
chr7 (1-64)||(28583434-28583497)
chr7 (2-61)||(34534279-34534338)
chr7 (1-59)||(32005101-32005159)
chr7 (1-46)||(29099863-29099908)
chr7 (1-53)||(29100338-29100390)
chr7 (1-61)||(38160949-38161009)
chr7 (1-55)||(23953216-23953270)
chr7 (1-61)||(23952728-23952789)
chr7 (3-60)||(39137023-39137080)
chr7 (1-61)||(2659327-2659387)
[»] chr6 (29 HSPs)
chr6 (1-62)||(1149462-1149523)
chr6 (1-53)||(10899945-10899997)
chr6 (1-61)||(12935155-12935215)
chr6 (1-61)||(20741098-20741158)
chr6 (1-61)||(22219840-22219900)
chr6 (1-60)||(23073998-23074057)
chr6 (3-61)||(11445476-11445534)
chr6 (1-62)||(18257134-18257195)
chr6 (1-62)||(23075615-23075676)
chr6 (8-60)||(31470314-31470366)
chr6 (2-61)||(11444985-11445044)
chr6 (3-62)||(12935646-12935705)
chr6 (1-59)||(11277069-11277127)
chr6 (3-53)||(18504925-18504975)
chr6 (1-61)||(2319670-2319730)
chr6 (8-60)||(15828135-15828187)
chr6 (1-60)||(20741591-20741650)
chr6 (1-59)||(10900417-10900475)
chr6 (1-59)||(18257624-18257682)
chr6 (3-61)||(28472635-28472693)
chr6 (3-61)||(29859824-29859882)
chr6 (1-59)||(1149919-1149977)
chr6 (9-58)||(15827639-15827688)
chr6 (1-58)||(18505406-18505463)
chr6 (1-58)||(31470803-31470860)
chr6 (11-59)||(4811753-4811801)
chr6 (1-53)||(29033440-29033492)
chr6 (3-53)||(2322707-2322757)
chr6 (3-59)||(22534214-22534270)
[»] chr5 (31 HSPs)
chr5 (1-63)||(2865242-2865304)
chr5 (1-62)||(19359623-19359684)
chr5 (1-61)||(18183456-18183516)
chr5 (1-64)||(5818924-5818987)
chr5 (1-59)||(5819416-5819474)
chr5 (1-63)||(18182966-18183028)
chr5 (1-62)||(8460927-8460988)
chr5 (3-59)||(8647438-8647494)
chr5 (1-61)||(8647925-8647985)
chr5 (1-53)||(15372360-15372412)
chr5 (1-61)||(24362323-24362383)
chr5 (1-59)||(164191-164249)
chr5 (1-59)||(19359136-19359194)
chr5 (4-60)||(8461421-8461477)
chr5 (1-61)||(24331557-24331617)
chr5 (1-60)||(29455229-29455288)
chr5 (3-59)||(4623148-4623204)
chr5 (1-61)||(14215730-14215790)
chr5 (9-61)||(15708969-15709021)
chr5 (4-59)||(7349507-7349562)
chr5 (1-60)||(29454739-29454798)
chr5 (1-59)||(15709455-15709513)
chr5 (12-61)||(14464018-14464067)
chr5 (9-53)||(14215247-14215291)
chr5 (4-64)||(16019077-16019137)
chr5 (8-60)||(25000583-25000635)
chr5 (1-60)||(16018588-16018647)
chr5 (1-58)||(4222209-4222266)
chr5 (1-53)||(2864760-2864812)
chr5 (1-53)||(15371877-15371928)
chr5 (3-62)||(24332052-24332112)
[»] chr4 (41 HSPs)
chr4 (1-63)||(51021282-51021344)
chr4 (1-62)||(15523232-15523293)
chr4 (1-61)||(23494930-23494990)
chr4 (1-61)||(25447723-25447783)
chr4 (1-60)||(15523721-15523780)
chr4 (3-59)||(11153636-11153692)
chr4 (4-59)||(35363091-35363146)
chr4 (1-59)||(22434179-22434237)
chr4 (1-59)||(25447247-25447305)
chr4 (1-59)||(46193405-46193463)
chr4 (1-61)||(25937668-25937728)
chr4 (1-53)||(46193892-46193944)
chr4 (1-60)||(16318263-16318322)
chr4 (1-60)||(25938158-25938217)
chr4 (3-53)||(4219563-4219613)
chr4 (3-53)||(22434665-22434715)
chr4 (1-63)||(33109951-33110013)
chr4 (1-59)||(45082911-45082969)
chr4 (4-53)||(4220049-4220098)
chr4 (8-53)||(18764014-18764059)
chr4 (8-61)||(20471005-20471058)
chr4 (1-53)||(2118299-2118351)
chr4 (1-61)||(12234327-12234387)
chr4 (1-53)||(23494449-23494501)
chr4 (1-53)||(54995554-54995606)
chr4 (1-60)||(10258374-10258433)
chr4 (1-59)||(12234816-12234874)
chr4 (1-63)||(54995065-54995127)
chr4 (1-58)||(20958346-20958403)
chr4 (4-53)||(33109690-33109739)
chr4 (5-62)||(48293591-48293648)
chr4 (3-59)||(16691560-16691616)
chr4 (1-53)||(18751605-18751657)
chr4 (1-53)||(48526668-48526720)
chr4 (1-61)||(51020795-51020855)
chr4 (6-53)||(2118787-2118834)
chr4 (1-60)||(11153145-11153204)
chr4 (210-280)||(32897488-32897557)
chr4 (1-62)||(38962306-38962367)
chr4 (1-37)||(43243767-43243803)
chr4 (3-59)||(48295032-48295088)
[»] chr2 (34 HSPs)
chr2 (3-61)||(239351-239409)
chr2 (4-61)||(43058822-43058879)
chr2 (1-61)||(26538566-26538626)
chr2 (1-64)||(22374315-22374378)
chr2 (1-60)||(40027139-40027198)
chr2 (1-63)||(11091007-11091069)
chr2 (1-61)||(18451318-18451378)
chr2 (1-61)||(20440518-20440578)
chr2 (1-64)||(11090516-11090579)
chr2 (1-60)||(18450829-18450888)
chr2 (1-60)||(20444748-20444807)
chr2 (1-59)||(28616613-28616671)
chr2 (1-62)||(1978596-1978657)
chr2 (1-58)||(35781150-35781207)
chr2 (1-61)||(1978106-1978166)
chr2 (1-61)||(7446833-7446893)
chr2 (1-61)||(22374812-22374872)
chr2 (1-53)||(40027627-40027679)
chr2 (1-53)||(40815351-40815403)
chr2 (3-59)||(43058333-43058389)
chr2 (1-52)||(239839-239890)
chr2 (1-60)||(7446341-7446400)
chr2 (1-60)||(26538096-26538155)
chr2 (9-60)||(28617109-28617160)
chr2 (4-62)||(28847185-28847243)
chr2 (4-53)||(3025472-3025521)
chr2 (1-53)||(14432148-14432200)
chr2 (9-53)||(40815840-40815884)
chr2 (350-414)||(31411187-31411252)
chr2 (3-59)||(35779708-35779764)
chr2 (3-53)||(14432630-14432680)
chr2 (8-53)||(8425361-8425406)
chr2 (1-53)||(8425847-8425899)
chr2 (1-53)||(8972243-8972295)
[»] chr8 (23 HSPs)
chr8 (1-62)||(41681131-41681192)
chr8 (4-61)||(34541038-34541095)
chr8 (1-61)||(11656453-11656513)
chr8 (1-61)||(19176288-19176348)
chr8 (1-61)||(19176777-19176837)
chr8 (1-60)||(9930144-9930203)
chr8 (1-60)||(13225126-13225185)
chr8 (4-53)||(4630276-4630325)
chr8 (7-60)||(11656950-11657003)
chr8 (1-62)||(31133217-31133278)
chr8 (1-58)||(31133707-31133764)
chr8 (9-61)||(12571861-12571913)
chr8 (1-61)||(33742920-33742980)
chr8 (1-60)||(44831246-44831305)
chr8 (1-59)||(9178122-9178180)
chr8 (1-59)||(41681621-41681679)
chr8 (8-53)||(13224647-13224692)
chr8 (4-61)||(44831735-44831792)
chr8 (1-53)||(9928915-9928967)
chr8 (1-61)||(11337009-11337069)
chr8 (1-53)||(33328164-33328216)
chr8 (1-61)||(4629795-4629855)
chr8 (12-53)||(12572349-12572390)
[»] chr1 (35 HSPs)
chr1 (1-64)||(8678536-8678599)
chr1 (4-63)||(50970274-50970333)
chr1 (1-62)||(18984116-18984177)
chr1 (3-63)||(15173582-15173642)
chr1 (1-53)||(33144406-33144458)
chr1 (4-60)||(39154510-39154566)
chr1 (1-64)||(5539811-5539874)
chr1 (5-60)||(5540309-5540364)
chr1 (8-59)||(29306953-29307004)
chr1 (1-60)||(50970765-50970824)
chr1 (1-59)||(8679028-8679086)
chr1 (308-423)||(12162475-12162593)
chr1 (1-51)||(33143925-33143975)
chr1 (1-58)||(4636458-4636515)
chr1 (1-62)||(26859546-26859607)
chr1 (1-61)||(9018971-9019031)
chr1 (1-53)||(15173102-15173154)
chr1 (1-61)||(15646190-15646250)
chr1 (3-59)||(29870108-29870164)
chr1 (1-60)||(15646682-15646741)
chr1 (1-64)||(17433702-17433765)
chr1 (1-60)||(18984606-18984665)
chr1 (1-60)||(29869619-29869678)
chr1 (1-59)||(29307429-29307487)
chr1 (1-53)||(5963065-5963117)
chr1 (1-53)||(21856048-21856100)
chr1 (3-59)||(21856532-21856588)
chr1 (3-59)||(26859059-26859115)
chr1 (1-60)||(52268289-52268348)
chr1 (3-61)||(9019452-9019510)
chr1 (1-62)||(39154016-39154077)
chr1 (1-53)||(47826970-47827022)
chr1 (1-51)||(47827075-47827125)
chr1 (1-61)||(2733444-2733504)
chr1 (11-59)||(17433216-17433264)
[»] scaffold0951 (2 HSPs)
scaffold0951 (1-62)||(1664-1725)
scaffold0951 (1-61)||(2154-2214)
[»] scaffold0295 (2 HSPs)
scaffold0295 (1-61)||(4791-4851)
scaffold0295 (8-53)||(5285-5330)
[»] scaffold0273 (1 HSPs)
scaffold0273 (1-61)||(4694-4754)
[»] scaffold0417 (2 HSPs)
scaffold0417 (1-59)||(11110-11168)
scaffold0417 (1-37)||(10643-10679)
[»] scaffold0176 (2 HSPs)
scaffold0176 (1-59)||(19108-19166)
scaffold0176 (1-60)||(18834-18893)
[»] scaffold1223 (2 HSPs)
scaffold1223 (1-62)||(750-811)
scaffold1223 (1-59)||(1228-1286)
[»] scaffold0113 (1 HSPs)
scaffold0113 (1-53)||(28730-28782)
[»] scaffold0019 (1 HSPs)
scaffold0019 (1-61)||(134160-134220)
[»] scaffold0057 (2 HSPs)
scaffold0057 (3-62)||(61025-61084)
scaffold0057 (1-53)||(61945-61997)
[»] scaffold1585 (1 HSPs)
scaffold1585 (1-58)||(568-625)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-53)||(64792-64844)
scaffold0007 (5-60)||(64301-64356)
[»] scaffold0432 (1 HSPs)
scaffold0432 (9-53)||(10367-10411)
[»] scaffold0076 (1 HSPs)
scaffold0076 (1-53)||(8496-8548)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 44)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 60 - 424
Target Start/End: Original strand, 13886096 - 13886460
Alignment:
Q  60 tattagtattttatagcagggggttcgaatagaaattcttctcaacaccagggtgtggatagaaggtttgctgagtaaaaacaatatctccgtatactgg 159  Q
    |||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13886096 tattagtattttatagaagggggtacgaatagaatttcttctcaacaccagggtgtggatagaaggtttgctgagtaaaaacaatatctccgtatactgg 13886195  T
Q  160 gctggaaatgacccaatgaaggagtttccccaatttaaataactgactgcagcagaaagaaggaggtgcagaaagtattctggttcttgtctactttttc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  13886196 gctggaaatgacccaatgaaggagtttccccaatttaaataactgactgcagcagaaagaaggaggtacagaaagtatactggttcttgtctactttttc 13886295  T
Q  260 tattgattcaagttctaaaaacaaaagttattcacttactcgttcataactaaaatcttagtccctaaatactcatattaaactactattatttcatatt 359  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  13886296 tattgattcaagttctaaaaacaaaagttattcacttactcgtccataactaaaatcttagtctctaaatactcatagtaaactactattatttcatatt 13886395  T
Q  360 actcctaaatcaaataaatacatgtaaattttcacaccataacaaatacacatatgaggaaaaag 424  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13886396 actcctaaatcaaataagtacatgtaaattttcacaccataacaaatacacatatgaggaaaaag 13886460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31779139 - 31779202
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  31779139 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 31779202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 48453045 - 48452987
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  48453045 ggcaggaccagtttcgtgagtaggccaaaacacgatgaccaaaagtgtaatcaagccta 48452987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 29801903 - 29801963
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||    
T  29801903 agggcaggaccagtttcgtgagtaggccaaaatacgaggatcaaaagtgtaattaagccta 29801963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 20840616 - 20840558
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  20840616 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 20840558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32535450 - 32535508
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  32535450 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 32535508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39556064 - 39556122
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  39556064 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 39556122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 39555634 - 39555577
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  39555634 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 39555577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 43973927 - 43973987
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  43973927 agggcagaaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 43973987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 4275858 - 4275912
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  4275858 gaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 4275912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 24301045 - 24301103
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||| |||||||||||||||||||||||| || |||||||||||| |||||||    
T  24301045 ggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 24301103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29801414 - 29801356
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||| ||||||| ||||||||||||||| |||||||||||| |||||    
T  29801414 agggcaggaccagttttgtgagtatgccaaaacacgatgaccaaaagtgtaattaagcc 29801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 20841050 - 20841107
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||||||||||||||||||||||||||  | |||||||||||| ||||||    
T  20841050 ggcaggaccagtttcgtgagtaggccaaaacacgagcaccaaaagtgtaattaagcct 20841107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 5137468 - 5137528
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||| ||||||||| ||||||||||||||||||| || |||||||||||| |||||||    
T  5137468 agggcagaaccagtttcatgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 5137528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26837842 - 26837902
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||||||||| |||||||    
T  26837842 agggcagaaccagtttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 26837902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 30104540 - 30104480
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||| ||||||||||||| |||||||||| || |||||||||||| |||||||    
T  30104540 agggcaggaccaatttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagccta 30104480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31778711 - 31778652
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||| ||||||| ||||||||||| || |||||||||||| ||||||    
T  31778711 agggcaggaccagtttcatgagtagaccaaaacacgaggaccaaaagtgtaattaagcct 31778652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 37727420 - 37727475
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||||||||||||||| || || |||||||||||| |||||    
T  37727420 gcaggaccagtttcgtgagtaggccaaaacatgaggaccaaaagtgtaattaagcc 37727475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25853292 - 25853234
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| ||||| |||||||||||||||||||||||| || |||||||||||| |||||    
T  25853292 agggcatgaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 25853234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 23644518 - 23644461
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||| ||||||||||||||||||| |||| || |||||||||||| ||||||    
T  23644518 ggcaggaccaatttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagcct 23644461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 27393717 - 27393660
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||||| ||||||||| |||||||||| || |||||||||||| ||||||    
T  27393717 ggcaggaccagttttgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagcct 27393660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 27394066 - 27394123
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||  |||||||||||||||||||||||| || |||||||||||| ||||||    
T  27394066 ggcaggacctatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 27394123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17464549 - 17464489
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| ||||||||||| || ||||||||||||||| || |||||||||||| |||||||    
T  17464549 agggcatgaccagtttcgcgaataggccaaaacacgaggaccaaaagtgtaattaagccta 17464489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25612464 - 25612516
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| ||||||||||||| |||||||||| || ||||||||||||    
T  25612464 agggcaggaccaatttcgtgagtaggtcaaaacacgaggaccaaaagtgtaat 25612516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 25853721 - 25853777
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||| ||| ||||||    
T  25853721 gaccagtttcgtgagtagagcaaaacacgaggatcaaaagtgtaattaagtctatta 25853777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5137038 - 5136975
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    |||||| ||||| |||||||||| ||||||||||||| || |||||||||||| || |||||||    
T  5137038 agggcatgaccaatttcgtgagttggccaaaacacgaggaccaaaagtgtaattaaacctatta 5136975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 30098250 - 30098309
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| ||||||||||||||||| | |||||||||| || |||||||||||| ||||||    
T  30098250 agggcaagaccagtttcgtgagtatgtcaaaacacgaggaccaaaagtgtaattaagcct 30098309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 37222060 - 37222119
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||| ||| ||||||||| |||||||||| || |||||||||||| ||||||||    
T  37222060 ggcaggaccaattttgtgagtagggcaaaacacgaggaccaaaagtgtaattaagcctat 37222119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23644952 - 23645010
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||| ||||||| |||||||||||||||||||||||| || ||||||| |||| |||||    
T  23644952 agggtaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtataattaagcc 23645010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 32535015 - 32534965
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||| ||||||||||| |||||||||||| || ||||||||||||    
T  32535015 ggcaggaccaatttcgtgagtatgccaaaacacgaggaccaaaagtgtaat 32534965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 50116896 - 50116954
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| ||||| ||||||||||| | |||||||||| ||||||||||||||| |||||    
T  50116896 agggcatgaccaatttcgtgagtaagtcaaaacacgaggatcaaaagtgtaattaagcc 50116954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 51473486 - 51473429
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    |||||||||||| |||||||| ||| ||||||||||| || |||||||||||| ||||    
T  51473486 agggcaggaccaatttcgtgaatagaccaaaacacgaggaccaaaagtgtaattaagc 51473429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 22425300 - 22425352
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| |||||| |||||||||||||| |||||||| || ||||||||||||    
T  22425300 agggcatgaccagattcgtgagtaggccgaaacacgaggaccaaaagtgtaat 22425352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 26274625 - 26274573
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||||||| |||||| || | |||||||| ||||||    
T  26274625 agggcaggaccagtttcgtgagtagtccaaaatacaaggatcaaaaatgtaat 26274573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 41046758 - 41046706
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| |||||||||||| | ||||||||||||||| || ||||||||||||    
T  41046758 agggcatgaccagtttcgtaattaggccaaaacacgaggaccaaaagtgtaat 41046706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 53
Target Start/End: Original strand, 25420641 - 25420680
Alignment:
Q  14 tttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  25420641 tttcgtgagtaggtcaaaatacgatgatcaaaagtgtaat 25420680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37726987 - 37726928
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||| ||||||||||| || || ||||||||||| || |||||||||||| ||||||    
T  37726987 agggcagaaccagtttcgtaagcagaccaaaacacgaggaccaaaagtgtaattaagcct 37726928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 45965982 - 45965935
Alignment:
Q  15 ttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||| |||||||||||| || |||||||||||| ||||||||    
T  45965982 ttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcctat 45965935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 23228494 - 23228552
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| || || |||||||||||||||||||||||  || |||||||||||| |||||    
T  23228494 agggcatgatcattttcgtgagtaggccaaaacacggggaccaaaagtgtaattaagcc 23228552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 26837418 - 26837356
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||||||||||| ||||||||||||||||||| || | || ||||| |||||| || ||||||    
T  26837418 agggcaggaccaatttcgtgagtaggccaaaatacaaggaccaaaaatgtaattaaacctatt 26837356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 43973486 - 43973441
Alignment:
Q  14 tttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||| |||||||||| || |||||||||||| |||||    
T  43973486 tttcgtgagtaggacaaaacacgaggaccaaaagtgtaattaagcc 43973441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 17464986 - 17465038
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||| || |||||||||||||||| || ||||| |||||| ||||||    
T  17464986 gaccagtttcatgcgtaggccaaaacacgaggaccaaaaatgtaattaagcct 17465038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37220598 - 37220554
Alignment:
Q  18 gtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||||||||||| |||| || |||||||||||| ||||||||    
T  37220598 gtgagtaggccaaaatacgaggaccaaaagtgtaattaagcctat 37220554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 51474821 - 51474881
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| ||||| ||||||||||| |||||||||||   | |||||||||||| |||||||    
T  51474821 agggcatgaccaatttcgtgagtatgccaaaacacgggaaccaaaagtgtaattaagccta 51474881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 35289388 - 35289450
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  35289388 agggcaggaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctatt 35289450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 4478187 - 4478237
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgta 51  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  4478187 agggcaggaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgta 4478237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19590583 - 19590525
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  19590583 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 19590525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35288961 - 35288903
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||    
T  35288961 agggcaggaccagtttcgtgagtaggccaaaatacgatgaccaaaagtgtaattaagcc 35288903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2658897 - 2658837
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| ||  ||||||||||| |||||||    
T  2658897 agggcaggaccagtttcgtgagtaggccaaaacacgaggacaaaaagtgtaattaagccta 2658837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19591012 - 19591072
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||||||||  | |||||||||||| |||||||    
T  19591012 agggcaggaccagtttcgtgagtaggccaaaacacgagtaccaaaagtgtaattaagccta 19591072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 38859128 - 38859188
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||| |||||||||||||||||||||||| || |||||||||||| |||||||    
T  38859128 agggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 38859188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 19830478 - 19830415
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| || |||||||    
T  19830478 agggcaagaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctatta 19830415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37786825 - 37786766
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||    
T  37786825 agggcaggaccagtttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagcct 37786766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 34533842 - 34533788
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  34533842 gaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 34533788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 32004672 - 32004611
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||||| || |||||||||||||||||||||||| || |||||||||||| ||||||||    
T  32004672 agggcaggatcaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 32004611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 37787257 - 37787314
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||||| || ||||||| |||| |||||||    
T  37787257 gcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtataattaagccta 37787314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 19830910 - 19830965
Alignment:
Q  5 caggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||| |||||||||||||||||||| || |||||||||||| ||||||    
T  19830910 caggaccagttttgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 19830965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 4641495 - 4641446
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||||||    
T  4641495 gcaggaccagtttcgtgagtaagccaaaacacgaggaccaaaagtgtaat 4641446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 38858698 - 38858642
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||| || ||||||    
T  38858698 gcaggaccagtttcgtgagtatgccaaaacacgaggaccaaaagtgttattaagcct 38858642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28583497 - 28583434
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    ||||||| |||| | || ||||||||||||||||||| || |||||||||||| ||||||||||    
T  28583497 agggcagaaccaatctcatgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 28583434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 61
Target Start/End: Original strand, 34534279 - 34534338
Alignment:
Q  2 gggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||| |||||||||||||||||||||||||||  | ||||||| |||| |||||||    
T  34534279 gggcaggatcagtttcgtgagtaggccaaaacacgagaaccaaaagtataattaagccta 34534338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 32005101 - 32005159
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| ||||||||||||||||| ||||||||| || || |||||||||||| |||||    
T  32005101 agggcatgaccagtttcgtgagtatgccaaaacatgaggaccaaaagtgtaattaagcc 32005159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 29099908 - 29099863
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaa 46  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||    
T  29099908 agggcaggatcagtttcgtgagtaggccaaaacacgaggaccaaaa 29099863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 29100338 - 29100390
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| ||| |||||||| ||||||||||| || ||||||||||||    
T  29100338 agggcaggaccaattttgtgagtagaccaaaacacgaggaccaaaagtgtaat 29100390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 38161009 - 38160949
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||  | |||||||||||||||||||| ||| || |||||||||||| |||||||    
T  38161009 agggcaggattattttcgtgagtaggccaaaacccgaggaccaaaagtgtaattaagccta 38160949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23953216 - 23953270
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataa 55  Q
    ||||| |||||||||||||||||||  |||||||||| || ||||| ||||||||    
T  23953216 agggcgggaccagtttcgtgagtagatcaaaacacgaggaccaaaaatgtaataa 23953270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 23952789 - 23952728
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggc-caaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| ||||| |||||||||||||  |||||||||| || |||||||||||| |||||||    
T  23952789 agggcatgaccaatttcgtgagtagggtcaaaacacgaggaccaaaagtgtaattaagccta 23952728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 39137023 - 39137080
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||| |||||||||  || ||||| |||| ||||||||||||||| ||||||    
T  39137023 ggcaggaccattttcgtgagcgggtcaaaatacgaggatcaaaagtgtaattaagcct 39137080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2659327 - 2659387
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| |||||||||| ||| ||||||||||| ||| || ||||| |||||| |||||||    
T  2659327 agggcaagaccagtttcatgaataggccaaaacgcgaggaccaaaattgtaattaagccta 2659387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 29)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1149523 - 1149462
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  1149523 agggcaggaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctat 1149462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 10899997 - 10899945
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10899997 agggcaggaccagtttcgtgagtaggccaaaacacgatgaccaaaagtgtaat 10899945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12935215 - 12935155
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  12935215 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 12935155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 20741158 - 20741098
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  20741158 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 20741098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22219840 - 22219900
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  22219840 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 22219900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 23074057 - 23073998
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  23074057 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 23073998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 11445476 - 11445534
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  11445476 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 11445534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18257195 - 18257134
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||    
T  18257195 agggcaggaccagtttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcctat 18257134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 23075615 - 23075676
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  23075615 agggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 23075676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 31470366 - 31470314
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  31470366 gaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcct 31470314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 61
Target Start/End: Complemental strand, 11445044 - 11444985
Alignment:
Q  2 gggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||| ||||||||||||||||||||||| || |||||||||||| |||||||    
T  11445044 gggcaggaccagcttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 11444985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 12935646 - 12935705
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||||||||||| |||||||||||| || |||||||||||| ||||||||    
T  12935646 ggcaggaccagtttcgtgagtacgccaaaacacgaggaccaaaagtgtaattaagcctat 12935705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11277069 - 11277127
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  11277069 agggcaggaccagtttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcc 11277127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 18504975 - 18504925
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  18504975 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 18504925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 2319730 - 2319670
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| |||||||||||||||||||||||||||||| || ||||| |||||| |||||||    
T  2319730 agggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaaatgtaattaagccta 2319670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 15828135 - 15828187
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  15828135 gaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 15828187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20741591 - 20741650
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||| ||||||||||||||||||||||||||| || ||| |||||||| ||||||    
T  20741591 agggcaggatcagtttcgtgagtaggccaaaacacgaggaccaagagtgtaattaagcct 20741650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 10900417 - 10900475
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| ||||||||||||||||||||||||| |||| || |||||||||||| |||||    
T  10900417 agggcatgaccagtttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagcc 10900475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18257624 - 18257682
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||||| |||||||||| || ||||||| |||| |||||    
T  18257624 agggcaggaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtataattaagcc 18257682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 28472693 - 28472635
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||| |||||||||| ||||||||||||| || |||||||||||| |||||||    
T  28472693 ggcaggaccactttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagccta 28472635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 29859882 - 29859824
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||| |||||||||| ||||||||||||| || |||||||||||| |||||||    
T  29859882 ggcaggaccactttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagccta 29859824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1149919 - 1149977
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| |||||||||| ||||||||| ||||||||| || |||||||||||| |||||    
T  1149919 agggcatgaccagtttcatgagtaggctaaaacacgaggaccaaaagtgtaattaagcc 1149977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 15827688 - 15827639
Alignment:
Q  9 accagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    |||||||||||||||| |||||||||||| || |||||||||||| ||||    
T  15827688 accagtttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagc 15827639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 18505406 - 18505463
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    ||||||||| ||||||||||||||| ||||||||||| || ||||||| |||| ||||    
T  18505406 agggcaggatcagtttcgtgagtagaccaaaacacgaggaccaaaagtataattaagc 18505463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31470803 - 31470860
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    ||||||| ||||||||||||||||||| ||||||| | || |||||||||||| ||||    
T  31470803 agggcagaaccagtttcgtgagtaggctaaaacacaaggaccaaaagtgtaattaagc 31470860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 4811753 - 4811801
Alignment:
Q  11 cagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||| ||||||||||||||||||| |||||||||| |||| |||||    
T  4811753 cagtttcatgagtaggccaaaacacgaggatcaaaagtataattaagcc 4811801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 29033492 - 29033440
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| ||||||||| ||||||||| |||| || ||||||||||||    
T  29033492 agggcaggaccaatttcgtgagcaggccaaaatacgaggaccaaaagtgtaat 29033440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 2322707 - 2322757
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||| ||| |||||||||||||| ||||||||||| || ||||||||||||    
T  2322707 ggcaagactagtttcgtgagtagaccaaaacacgaagaccaaaagtgtaat 2322757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 22534214 - 22534270
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||| |||||||||| || ||||| |||| || |||||||||||| |||||    
T  22534214 ggcaggaccattttcgtgagttggtcaaaatacgaggaccaaaagtgtaattaagcc 22534270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 2865242 - 2865304
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  2865242 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 2865304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 19359623 - 19359684
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  19359623 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 19359684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18183456 - 18183516
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  18183456 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 18183516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5818987 - 5818924
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||    
T  5818987 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctatta 5818924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5819416 - 5819474
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  5819416 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 5819474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 18183028 - 18182966
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||| || ||||||    
T  18183028 agggcatgaccagtttcgtgagtaggccaaaacacgatgaccaaaagtgtaattaaacctatt 18182966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 8460988 - 8460927
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||||||||||||||||||||| ||||||| |||||||| ||| ||||||||    
T  8460988 agggcaggaccagtttcgtgagtaggccaaaatacgatgaccaaaagtggaattaagcctat 8460927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 8647494 - 8647438
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  8647494 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 8647438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 8647925 - 8647985
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  8647925 agggcaggatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 8647985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 15372360 - 15372412
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  15372360 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 15372412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 24362323 - 24362383
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||||| |||||||    
T  24362323 agggcaggaccagtttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagccta 24362383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 164249 - 164191
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||||| |||||||||| || |||||||||||| |||||    
T  164249 agggcaggaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagcc 164191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19359194 - 19359136
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||||||||||||| || || |||||||||||| |||||    
T  19359194 agggcaggaccagtttcgtgagtaggccaaaacaagaggaccaaaagtgtaattaagcc 19359136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 8461421 - 8461477
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| ||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  8461421 gcaggaacagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 8461477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24331617 - 24331557
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||  |||||||||| || |||||||||||| |||||||    
T  24331617 agggcaggaccagtttcgtgagtagatcaaaacacgaggaccaaaagtgtaattaagccta 24331557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29455229 - 29455288
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||||| ||||||||||| || |||| ||||||| ||||||    
T  29455229 agggcaggaccagtttcgtgagtagaccaaaacacgaggaccaaaggtgtaattaagcct 29455288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 4623204 - 4623148
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||| ||||||||||| | ||||||||||||| |||||||||||| |||||    
T  4623204 ggcaggaccaatttcgtgagtaagtcaaaacacgatgaccaaaagtgtaattaagcc 4623148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 14215730 - 14215790
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||| |||||||||||||||| |||||||||| || ||||| |||||| |||||||    
T  14215730 agggcaggatcagtttcgtgagtaggtcaaaacacgaggaccaaaattgtaattaagccta 14215790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 15709021 - 15708969
Alignment:
Q  9 accagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||| | || |||||||||||| |||||||    
T  15709021 accagtttcgtgagtaggccaaaacactaggaccaaaagtgtaattaagccta 15708969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 7349507 - 7349562
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||| |||||||||||| ||||||||||| || |||||||||||| |||||    
T  7349507 gcaggaccaatttcgtgagtagaccaaaacacgaggaccaaaagtgtaattaagcc 7349562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29454798 - 29454739
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| ||||| |||||||||||||||||||||| |||| |||||||| ||| ||||||    
T  29454798 agggcatgaccaatttcgtgagtaggccaaaacacaatgaccaaaagtgaaattaagcct 29454739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 15709455 - 15709513
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| ||| |||||| ||||||||||||||||| |||| |||||||||||| |||||    
T  15709455 agggcatgactagtttcatgagtaggccaaaacacaatgaccaaaagtgtaattaagcc 15709513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 14464018 - 14464067
Alignment:
Q  12 agtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||| ||  ||||||||||| |||||||    
T  14464018 agtttcgtgagtaggccaaaacacgaggactaaaagtgtaattaagccta 14464067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 14215291 - 14215247
Alignment:
Q  9 accagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||||| |||||||||||| || ||||||||||||    
T  14215291 accagtttcgtgagtaagccaaaacacgaggaccaaaagtgtaat 14215247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 16019077 - 16019137
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    ||||||||| ||||||||||| ||||||||| || || |||||||||||| || |||||||    
T  16019077 gcaggaccaatttcgtgagtatgccaaaacatgaggaccaaaagtgtaattaaacctatta 16019137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 25000583 - 25000635
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||| ||||||||||||||||||||| || || |||||||||||| ||||||    
T  25000583 gaccaatttcgtgagtaggccaaaacatgaagaccaaaagtgtaattaagcct 25000635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16018647 - 16018588
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| || || |||||||| ||||||||||||||| || |||||||||||| ||||||    
T  16018647 agggcatgatcaatttcgtgaataggccaaaacacgaagaccaaaagtgtaattaagcct 16018588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4222209 - 4222266
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    |||||| ||||| ||||||||| || ||||||||||| || |||||||||||| ||||    
T  4222209 agggcatgaccattttcgtgagaagcccaaaacacgaggaccaaaagtgtaattaagc 4222266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2864812 - 2864760
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| || || |||||||||||||||||||||| | || ||||||||||||    
T  2864812 agggcatgatcaatttcgtgagtaggccaaaacacaaggaccaaaagtgtaat 2864760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15371928 - 15371877
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| || ||||||||| |||||| |||| |||||||||||||||    
T  15371928 agggcaggaccaatt-cgtgagtagaccaaaatacgaggatcaaaagtgtaat 15371877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 24332052 - 24332112
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatc-aaaagtgtaataaagcctat 62  Q
    ||||||| |||||||||||||| ||||||||| ||||| | ||||||||||| ||| ||||    
T  24332052 ggcaggatcagtttcgtgagtatgccaaaacatgatgaccaaaaagtgtaattaagtctat 24332112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 5e-20; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 51021282 - 51021344
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||    
T  51021282 agggcaggaccaatttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcctatt 51021344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 15523293 - 15523232
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  15523293 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 15523232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 23494930 - 23494990
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  23494930 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 23494990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 25447723 - 25447783
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  25447723 agggcaggaccagtttcgtgagtaggccaaaacacgaagaccaaaagtgtaattaagccta 25447783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15523721 - 15523780
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||    
T  15523721 agggcaggaccagtttcgtgagtagcccaaaacacgatgaccaaaagtgtaattaagcct 15523780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 11153636 - 11153692
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  11153636 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 11153692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 35363091 - 35363146
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  35363091 gcagaaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcc 35363146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 22434237 - 22434179
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  22434237 agggcaggaccagtttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcc 22434179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25447305 - 25447247
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||    
T  25447305 agggcaggaccagtttcatgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 25447247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 46193463 - 46193405
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||| |||||||||||||||||||||||| || |||||||||||| |||||    
T  46193463 agggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 46193405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25937728 - 25937668
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||| ||||||||| || ||||| |||||| |||||||    
T  25937728 agggcaggaccagtttcgtgagtaggctaaaacacgaggaccaaaaatgtaattaagccta 25937668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 46193892 - 46193944
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  46193892 agggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 46193944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 16318263 - 16318322
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||| |||||| |||||||||||||||||||| || |||||||||||| ||||||    
T  16318263 agggcaggatcagttttgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 16318322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 25938158 - 25938217
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||| |||||||||||||||||||||| | || |||||||||||| ||||||    
T  25938158 agggcaggaccaatttcgtgagtaggccaaaacacaaggaccaaaagtgtaattaagcct 25938217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 4219613 - 4219563
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  4219613 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaaatgtaat 4219563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 22434665 - 22434715
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  22434665 ggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaaatgtaat 22434715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33109951 - 33110013
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||||||||||| ||||||||| ||||||||||| || || |||||||||||| |||||||||    
T  33109951 agggcaggaccaatttcgtgagcaggccaaaacatgaggaccaaaagtgtaattaagcctatt 33110013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 45082911 - 45082969
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| ||||||||||||||||| |||||||||||| || |||||||||||| |||||    
T  45082911 agggcatgaccagtttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcc 45082969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 4220049 - 4220098
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| ||||||||||||||||||||||||||| || ||||||||||||    
T  4220049 gcaggatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 4220098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 18764014 - 18764059
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  18764014 gaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 18764059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 20471005 - 20471058
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||| ||||||||||||||||| || |||||||||||| |||||||    
T  20471005 gaccagtttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 20471058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2118351 - 2118299
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| |||||||||||||||||||||| | || ||||||||||||    
T  2118351 agggcaggaccaatttcgtgagtaggccaaaacacaaggaccaaaagtgtaat 2118299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 12234387 - 12234327
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||| || ||||||||| || || |||||||||||| |||||||    
T  12234387 agggcaggaccagtttcgtgaataagccaaaacaagaggaccaaaagtgtaattaagccta 12234327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23494501 - 23494449
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||| |||||||||||||||||||||||||| || ||||| ||||||    
T  23494501 agggcaggactagtttcgtgagtaggccaaaacacgaggaccaaaaatgtaat 23494449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 54995554 - 54995606
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| || ||||||||||||||||||||||||||| || ||||||||||||    
T  54995554 agggcatgatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 54995606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10258374 - 10258433
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||| |||| ||||||||||| ||||||| || |||||||||||| ||||||    
T  10258374 agggcaggaccaatttcctgagtaggccacaacacgaggaccaaaagtgtaattaagcct 10258433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 12234816 - 12234874
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| || ||||||||||||||||||||||||||| || ||||||| |||| |||||    
T  12234816 agggcatgatcagtttcgtgagtaggccaaaacacgaggaccaaaagtataattaagcc 12234874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 54995127 - 54995065
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||| ||||| ||||||||||||||||||| |||||| || |||||||||||| || ||||||    
T  54995127 agggtaggactagtttcgtgagtaggccaatacacgaggaccaaaagtgtaattaaacctatt 54995065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20958346 - 20958403
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    |||||||||||| ||||||||||||||||||| |||| ||  ||||||||||| ||||    
T  20958346 agggcaggaccattttcgtgagtaggccaaaatacgaggactaaaagtgtaattaagc 20958403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 33109739 - 33109690
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||| |||||||||||| || ||||| ||||||    
T  33109739 gcaggaccagtttcgtgagtatgccaaaacacgaggaccaaaaatgtaat 33109690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 48293648 - 48293591
Alignment:
Q  5 caggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||| || ||||||||||| |||||||||||| || |||||||||||| ||||||||    
T  48293648 caggatcaatttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcctat 48293591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 16691560 - 16691616
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||| ||||||||||||| ||||||||   ||||||||||||||| |||||    
T  16691560 ggcaggaccattttcgtgagtaggtcaaaacacagggatcaaaagtgtaattaagcc 16691616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 18751657 - 18751605
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| |||||||||  ||||||||||||||||||| || ||||||||||||    
T  18751657 agggcatgaccagttttatgagtaggccaaaacacgaggaccaaaagtgtaat 18751605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 48526668 - 48526720
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| |||||||||||||||||| ||||||||||| || ||||||| ||||    
T  48526668 agggcaagaccagtttcgtgagtagaccaaaacacgaggaccaaaagtataat 48526720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 51020855 - 51020795
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||| |||| |  ||||||||| || ||||||||||||||| |||||||    
T  51020855 agggcaggaccagtttagtgaattagccaaaacatgaggatcaaaagtgtaattaagccta 51020795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 53
Target Start/End: Original strand, 2118787 - 2118834
Alignment:
Q  6 aggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| |||| |||||||||||||| || ||||||||||||    
T  2118787 aggaccagtttcatgagcaggccaaaacacgaagaccaaaagtgtaat 2118834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11153204 - 11153145
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| ||||| ||| |||||||||||||||||||| || ||||||| |||| ||||||    
T  11153204 agggcatgaccaattttgtgagtaggccaaaacacgaggaccaaaagtataattaagcct 11153145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 280
Target Start/End: Original strand, 32897488 - 32897557
Alignment:
Q  210 agcagaaagaaggaggtgcagaaagtattctggttcttgtctactttttctattgattcaagttctaaaaa 280  Q
    ||||||||  |||| |||||||||||| ||||||||   |||| |||||||||| ||||||||||||||||    
T  32897488 agcagaaaagaggaagtgcagaaagtagtctggttcaaatcta-tttttctattaattcaagttctaaaaa 32897557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38962306 - 38962367
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||| ||||||||||||||| ||| ||||||||||| || ||||| |||||| ||| ||||    
T  38962306 agggccggaccagtttcgtgaatagaccaaaacacgaggaccaaaaatgtaattaagtctat 38962367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43243767 - 43243803
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacga 37  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  43243767 agggcatgaccattttcgtgagtaggccaaaacacga 43243803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 48295032 - 48295088
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||| ||||| ||||||||||||  ||||||||||||| ||||| |||||| |||||    
T  48295032 ggcaagaccaatttcgtgagtagatcaaaacacgatgaccaaaaatgtaattaagcc 48295088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 239409 - 239351
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  239409 ggcaggaccagtttcgtgagtaggccaaaacacgatgaccaaaagtgtaattaagccta 239351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 43058822 - 43058879
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  43058822 gcaggaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagccta 43058879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 26538566 - 26538626
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  26538566 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 26538626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22374378 - 22374315
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||||||||    
T  22374378 agggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatta 22374315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40027198 - 40027139
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  40027198 agggcatgaccagtttcgtgagtaggccaaaacacgatgaccaaaagtgtaattaagcct 40027139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 11091007 - 11091069
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  11091007 agggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 11091069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 18451318 - 18451378
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||    
T  18451318 agggcaggaccagtttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 18451378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 20440518 - 20440578
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||||| |||||||    
T  20440518 agggcaggaccagtttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagccta 20440578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11090579 - 11090516
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||||||| || |||||||    
T  11090579 agggcaggacaagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaaacctatta 11090516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18450888 - 18450829
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  18450888 agggctggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 18450829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20444807 - 20444748
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||| ||||||||||||| || |||||||||||| ||||||    
T  20444807 agggcaggaccagtttcgtgagttggccaaaacacgaggaccaaaagtgtaattaagcct 20444748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 28616671 - 28616613
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||    
T  28616671 agggcaagaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 28616613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1978596 - 1978657
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||| |||||||||||||||||||||| | || |||||||||||| ||||||||    
T  1978596 agggcaggaccaatttcgtgagtaggccaaaacacaaggaccaaaagtgtaattaagcctat 1978657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 35781150 - 35781207
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||||    
T  35781150 agggcatgaccattttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagc 35781207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 1978166 - 1978106
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||||||||| | || ||||| |||||| |||||||    
T  1978166 agggcaggaccagtttcgtgagtaggccaaaacacaaggaccaaaaatgtaattaagccta 1978106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 7446833 - 7446893
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||| | |||||||||| |||||||| |||||| |||||||    
T  7446833 agggcaggaccagtttcgtgagtaaggcaaaacacgaggatcaaaaatgtaattaagccta 7446893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 22374812 - 22374872
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| ||||| |||||||||||||||||||||||| || |||||||||||| |||||||    
T  22374812 agggcaagaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 22374872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40027627 - 40027679
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| |||||||||||||||||||||||| || ||||||||||||    
T  40027627 agggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 40027679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 40815403 - 40815351
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| |||||||||||||||||||||||||||||| || ||||||||||||    
T  40815403 agggcaagaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 40815351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 43058389 - 43058333
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||||||| |||||    
T  43058389 ggcaggaccagtttagtgagttggccaaaacacgaggatcaaaagtgtaattaagcc 43058333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 239839 - 239890
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaa 52  Q
    |||||||||||| |||||||||||||||||||||||| || |||||||||||    
T  239839 agggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaa 239890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7446400 - 7446341
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||| |||| ||||||| ||||||||||| ||||||||||||||| ||||||    
T  7446400 agggcaggaccaatttcatgagtagaccaaaacacgaggatcaaaagtgtaattaagcct 7446341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26538155 - 26538096
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||| |||||||||||||||| |||||||||||| || |||||||||||| ||||||    
T  26538155 agggcagaaccagtttcgtgagtaagccaaaacacgaggaccaaaagtgtaattaagcct 26538096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 28617109 - 28617160
Alignment:
Q  9 accagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  28617109 accagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 28617160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 28847185 - 28847243
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||||||||||| ||||||||||| || ||||| |||||| ||||||||    
T  28847185 gcaggaccagtttcgtgagtagaccaaaacacgaggaccaaaaatgtaattaagcctat 28847243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 3025521 - 3025472
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  3025521 gcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaaatgtaat 3025472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 14432200 - 14432148
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| |||||||||| ||||||||||||||||||| || ||||||||||||    
T  14432200 agggcaagaccagtttcatgagtaggccaaaacacgaggaccaaaagtgtaat 14432148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 40815840 - 40815884
Alignment:
Q  9 accagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  40815840 accagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 40815884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 350 - 414
Target Start/End: Original strand, 31411187 - 31411252
Alignment:
Q  350 atttcatattactcctaaatcaaataaatacatgt-aaattttcacaccataacaaatacacatat 414  Q
    |||| ||||||||| |||||||||||||||||| | ||||| |||||| |||||||||| ||||||    
T  31411187 attttatattactcataaatcaaataaatacatataaaattatcacacgataacaaatatacatat 31411252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 35779764 - 35779708
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||| ||||||||||| | |||||||||| || |||||||||||| |||||    
T  35779764 ggcaggaccattttcgtgagtatgtcaaaacacgaggaccaaaagtgtaattaagcc 35779708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 53
Target Start/End: Original strand, 14432630 - 14432680
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||| |||||||||| ||||||||||||||||||| || ||||| ||||||    
T  14432630 ggcatgaccagtttcatgagtaggccaaaacacgaggaccaaaaatgtaat 14432680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 8425406 - 8425361
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||| |||||||||||||||||||||| | || ||||||||||||    
T  8425406 gaccaatttcgtgagtaggccaaaacacaaggaccaaaagtgtaat 8425361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8425847 - 8425899
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||| |||||||||||| ||||||||| |  | ||||||||||||    
T  8425847 agggcaggaccaatttcgtgagtagaccaaaacacaagaaccaaaagtgtaat 8425899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 8972295 - 8972243
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| ||||| ||||||||| | |||||||||||| || ||||||||||||    
T  8972295 agggcatgaccattttcgtgagcatgccaaaacacgaggaccaaaagtgtaat 8972243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41681192 - 41681131
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||    
T  41681192 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctat 41681131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 34541038 - 34541095
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  34541038 gcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 34541095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 11656513 - 11656453
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  11656513 agggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 11656453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19176348 - 19176288
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  19176348 agggcaggactagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 19176288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 19176777 - 19176837
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||||    
T  19176777 agggcaggaccagttacgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 19176837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9930144 - 9930203
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||||| ||||||    
T  9930144 agggcaggaccagtttcgtgagtaggccaaaatacgaggaccaaaagtgtaattaagcct 9930203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 13225126 - 13225185
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  13225126 agggcaagaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 13225185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 4630276 - 4630325
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  4630276 gcaggaccaatttcgtgagtagcccaaaacacgatgatcaaaagtgtaat 4630325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 11656950 - 11657003
Alignment:
Q  7 ggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  11656950 ggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 11657003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 31133278 - 31133217
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||| |||||||||||||||||||| |||||||||| || |||||||||||| ||||||||    
T  31133278 agggcgggaccagtttcgtgagtagggcaaaacacgaggaccaaaagtgtaattaagcctat 31133217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31133707 - 31133764
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||    
T  31133707 agggcaggatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 31133764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 12571913 - 12571861
Alignment:
Q  9 accagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  12571913 accagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 12571861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 33742980 - 33742920
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| ||||||||||||||||||| |||||||||| || |||||||||||| |||||||    
T  33742980 agggcaagaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagccta 33742920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 44831305 - 44831246
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||| ||||||||||||||||||||| || || |||||||||||| ||||||    
T  44831305 agggcaggaccaatttcgtgagtaggccaaaacatgaggaccaaaagtgtaattaagcct 44831246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 9178122 - 9178180
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||| || ||||||||||||||||||||||||||| || |||||||||||| |||||    
T  9178122 agggcatgatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 9178180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 41681621 - 41681679
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||| |||||||||||||||| ||||||||||||||| || |||||||||||| |||||    
T  41681621 agggtaggaccagtttcgtgattaggccaaaacacgaggaccaaaagtgtaattaagcc 41681679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 13224692 - 13224647
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||||||||||||||||||| || ||||||||||||    
T  13224692 gaccagtttcgtgagtaggccaaaacacgaagaccaaaagtgtaat 13224647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 44831735 - 44831792
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||| |||||||||||| || ||||||||| || |||||||    
T  44831735 gcaggaccagtttcgtgagtatgccaaaacacgaggaccaaaagtgttattaagccta 44831792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 9928967 - 9928915
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||||||||||||||  |||||||||| || ||||||||||||    
T  9928967 agggcaggaccagtttcgtgagtagatcaaaacacgaggaccaaaagtgtaat 9928915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11337009 - 11337069
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||| |||||| ||||||||||| |||||||||||| || |||||||||||| |||||||    
T  11337009 agggcgggaccaatttcgtgagtaagccaaaacacgaagaccaaaagtgtaattaagccta 11337069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 33328216 - 33328164
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| || ||||||||||||||||||||||||||| || ||||||||||||    
T  33328216 agggcatgatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 33328164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4629855 - 4629795
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||||| || ||||||||||||  || ||||||| ||| |||||||    
T  4629855 agggcaggaccagtttcgtgaatatgccaaaacacgagaattaaaagtgcaattaagccta 4629795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 12572349 - 12572390
Alignment:
Q  12 agtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||| ||||||||||| || ||||||||||||    
T  12572349 agtttcgtgagtagaccaaaacacgaggaccaaaagtgtaat 12572390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 8678599 - 8678536
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||| |||| |||||    
T  8678599 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcatatta 8678536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 63
Target Start/End: Complemental strand, 50970333 - 50970274
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||    
T  50970333 gcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 50970274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 18984177 - 18984116
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||||||||||||||||||||| ||||||||||| || |||||||||||| ||||||||    
T  18984177 agggcaggaccagtttcgtgagtagaccaaaacacgaggaccaaaagtgtaattaagcctat 18984116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 63
Target Start/End: Original strand, 15173582 - 15173642
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatt 63  Q
    |||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||    
T  15173582 ggcaggaccagttttgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcctatt 15173642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 33144406 - 33144458
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  33144406 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 33144458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 39154510 - 39154566
Alignment:
Q  4 gcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  39154510 gcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 39154566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 5539874 - 5539811
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    |||||||||||| |||||||||||||||||||||||| || |||||||||||| |||| |||||    
T  5539874 agggcaggaccaatttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcatatta 5539811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 5540309 - 5540364
Alignment:
Q  5 caggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  5540309 caggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 5540364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 29307004 - 29306953
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  29307004 gaccagtttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagcc 29306953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 50970765 - 50970824
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||| ||||||    
T  50970765 agggcaggaccagtttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagcct 50970824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8679028 - 8679086
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||| ||||||||||||||||||||| || |||||||||||| |||||    
T  8679028 agggcaggaccagttccgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 8679086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 308 - 423
Target Start/End: Original strand, 12162475 - 12162593
Alignment:
Q  308 actaaaatcttagtccctaaa-tactcatattaaactactattatttcatattact-cctaaatcaaataaatacatgtaaattt-tcacaccataacaa 404  Q
    |||||| | |||||| ||||| |||||||  ||||||||||| |||| |||||||| |||||||||||||||||  | |||| || ||||||||||||||    
T  12162475 actaaagtattagtctctaaagtactcatgctaaactactatcattttatattacttcctaaatcaaataaatatgtataaaattatcacaccataacaa 12162574  T
Q  405 atacacatatgaggaaaaa 423  Q
     ||||||||| ||||||||    
T  12162575 ttacacatataaggaaaaa 12162593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 33143975 - 33143925
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgta 51  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||    
T  33143975 agggcaggaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgta 33143925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4636458 - 4636515
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||| ||||    
T  4636458 agggcaggatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagc 4636515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 26859546 - 26859607
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||  |||||||||||||| ||||||||||| ||||||||||||||| ||||||||    
T  26859546 agggcaggattagtttcgtgagtagcccaaaacacgaggatcaaaagtgtaattaagcctat 26859607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 9019031 - 9018971
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||| ||||||||||| ||||||||||||||||| || |||||||||||| |||||||    
T  9019031 agggcagaaccagtttcgttagtaggccaaaacacgaggaccaaaagtgtaattaagccta 9018971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 15173154 - 15173102
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||| |||||||||||||||||||||||||| || ||||||||||||    
T  15173154 agggcaggactagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 15173102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 15646250 - 15646190
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| |||||||||||||||||||||||||||||| || ||||||| |||| |||||||    
T  15646250 agggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtataattaagccta 15646190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 29870108 - 29870164
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||| |||||    
T  29870108 ggcaggaccagtttcatgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 29870164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15646682 - 15646741
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||| |||| ||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  15646682 agggtaggatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcct 15646741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 17433702 - 17433765
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctatta 64  Q
    |||||| |||||||||||||||||||||| ||||||| || |||||||||||| ||| ||||||    
T  17433702 agggcatgaccagtttcgtgagtaggccagaacacgaggaccaaaagtgtaattaagtctatta 17433765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18984606 - 18984665
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||| |||||||||||||||||||||| | || |||||||||||| ||||||    
T  18984606 agggcaggaccaatttcgtgagtaggccaaaacacaaggaccaaaagtgtaattaagcct 18984665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 29869678 - 29869619
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| ||||||||||||||||| |||||||||||| || |||||||||||| ||||||    
T  29869678 agggcaagaccagtttcgtgagtatgccaaaacacgaggaccaaaagtgtaattaagcct 29869619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29307429 - 29307487
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||||| |||||||||| || |||||||| ||| |||||    
T  29307429 agggcaggaccagtttcgtgagtaggtcaaaacacgaggaccaaaagtgcaattaagcc 29307487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 5963065 - 5963117
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| || ||||||||||||||||||||||||||| || ||||||||||||    
T  5963065 agggcatgatcagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaat 5963117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21856100 - 21856048
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||||||||||||||  |||||||||| || ||||||||||||    
T  21856100 agggcaggaccagtttcgtgagtagatcaaaacacgaggaccaaaagtgtaat 21856048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 21856532 - 21856588
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||| ||||||| ||||||||||||||||||| || |||||||||||| |||||    
T  21856532 ggcaggatcagtttcatgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 21856588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 59
Target Start/End: Complemental strand, 26859115 - 26859059
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||| ||||||||||||||| | || |||||||||||| |||||    
T  26859115 ggcaggaccagtttcgttagtaggccaaaacacaaggaccaaaagtgtaattaagcc 26859059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52268348 - 52268289
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||||||||| ||||||||| ||||||||| |||| || |||||||||||| ||||||    
T  52268348 agggcaggaccaatttcgtgagcaggccaaaatacgaggaccaaaagtgtaattaagcct 52268289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 9019452 - 9019510
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||| |||||||| ||||||||| |||||||||| || |||||||||||| |||||||    
T  9019452 ggcagaaccagttttgtgagtaggtcaaaacacgaggaccaaaagtgtaattaagccta 9019510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 39154077 - 39154016
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||| || |||||||||||||| ||||||||| ||||| |||||||||||| ||| ||||    
T  39154077 agggcatgatcagtttcgtgagtatgccaaaacatgatgaccaaaagtgtaattaagtctat 39154016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47827022 - 47826970
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| ||||| |||||||||||| ||||||||||| || ||||||||||||    
T  47827022 agggcatgaccattttcgtgagtagaccaaaacacgaggaccaaaagtgtaat 47826970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 47827075 - 47827125
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgta 51  Q
    |||||| ||||| ||||||||||||||||||||| |  |||||||||||||    
T  47827075 agggcatgaccattttcgtgagtaggccaaaacaaggagatcaaaagtgta 47827125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2733444 - 2733504
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||| ||||| || ||||||||||||| | || ||||||| |||| |||||||    
T  2733444 agggcaggaccaatttcgcgaataggccaaaacacaaggaccaaaagtataattaagccta 2733504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 17433264 - 17433216
Alignment:
Q  11 cagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||| |||||||||||||||| || || |||||||||||| |||||    
T  17433264 cagtttcatgagtaggccaaaacatgaggaccaaaagtgtaattaagcc 17433216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 1725 - 1664
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||||||||||||||||||||||| || || |||||||||||| ||||||||    
T  1725 agggcaggaccagtttcgtgagtaggccaaaacaggaggaccaaaagtgtaattaagcctat 1664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 2154 - 2214
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||    
T  2154 agggcaggaccagtttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagccta 2214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4851 - 4791
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| |||||||||||||||||||||||||||||| || |||||||||||| |||||||    
T  4851 agggcatgaccagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 4791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 5285 - 5330
Alignment:
Q  8 gaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||||||||||| ||||||||||||||| || ||||||||||||    
T  5285 gaccagtttcgtgactaggccaaaacacgaggaccaaaagtgtaat 5330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 4694 - 4754
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||||||||||||||||||||| |||||||||||| || |||||||||||| |||||||    
T  4694 agggcaggaccagtttcgtgagtatgccaaaacacgaagaccaaaagtgtaattaagccta 4754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 11110 - 11168
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    ||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||    
T  11110 agggcaggaccagtttcgtaagtaggccaaaacacgaggaccaaaagtgtaattaagcc 11168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10679 - 10643
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacga 37  Q
    ||||||||||||||||| |||||||||||||||||||    
T  10679 agggcaggaccagtttcatgagtaggccaaaacacga 10643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 19108 - 19166
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||| |||||||||||||||||||||||||| || |||||||||||| |||||    
T  19108 agggcaggacaagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagcc 19166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18893 - 18834
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    |||||| |||||||||||||||||||||||||||  | || |||||||||||| ||||||    
T  18893 agggcaagaccagtttcgtgagtaggccaaaacagaaggaccaaaagtgtaatgaagcct 18834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 811 - 750
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    |||||||||||||| |||||||||||||||||||||| || |||||||||||| ||| ||||    
T  811 agggcaggaccagtatcgtgagtaggccaaaacacgaagaccaaaagtgtaattaagtctat 750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1223; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 1228 - 1286
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcc 59  Q
    |||||||||||||||||||||||| |||||||||||| ||  ||||||||||| |||||    
T  1228 agggcaggaccagtttcgtgagtaagccaaaacacgaggactaaaagtgtaattaagcc 1286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 28730 - 28782
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||||| |||||||||||| |||||||||||||||||||| ||||||||||||    
T  28730 agggcatgaccagtttcgtaagtaggccaaaacacgatgaccaaaagtgtaat 28782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 134160 - 134220
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagccta 61  Q
    |||||| ||| |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  134160 agggcatgactagtttcgtgagtaggccaaaacacgaggaccaaaagtgtaattaagccta 134220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 61084 - 61025
Alignment:
Q  3 ggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcctat 62  Q
    ||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||    
T  61084 ggcaggatcattttcgtgagtaggccaaaacacgaggatcaaaagtgtacttaagcctat 61025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 61945 - 61997
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||| ||||||| |||||||||||| ||||||||||| |||||||||||||||    
T  61945 agggtaggaccattttcgtgagtagaccaaaacacgaggatcaaaagtgtaat 61997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1585 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 625 - 568
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagc 58  Q
    |||||| || || |||||||||||||||||||||||| ||||||||||||||| ||||    
T  625 agggcatgatcattttcgtgagtaggccaaaacacgaggatcaaaagtgtaattaagc 568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 64792 - 64844
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||| |||||||||||||||||| |||||||||||| || ||||||||||||    
T  64792 agggcgggaccagtttcgtgagtatgccaaaacacgaggaccaaaagtgtaat 64844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 64356 - 64301
Alignment:
Q  5 caggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaataaagcct 60  Q
    ||||| |||||||||||||| | |||||||||| || |||||||||||| ||||||    
T  64356 caggatcagtttcgtgagtatgtcaaaacacgaggaccaaaagtgtaattaagcct 64301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 10367 - 10411
Alignment:
Q  9 accagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    ||||||||||||||||| ||||||||||| || ||||||||||||    
T  10367 accagtttcgtgagtagaccaaaacacgaggaccaaaagtgtaat 10411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8496 - 8548
Alignment:
Q  1 agggcaggaccagtttcgtgagtaggccaaaacacgatgatcaaaagtgtaat 53  Q
    |||| |||||||||||||| ||||| |||||||| || || ||||||||||||    
T  8496 agggtaggaccagtttcgtaagtagaccaaaacatgaagaccaaaagtgtaat 8548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University