View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_13 (Length: 436)
Name: NF18115_low_13
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 407
Target Start/End: Original strand, 42025784 - 42026170
Alignment:
| Q |
19 |
caaataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgctaaccaaataagtgacat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
42025784 |
caaataaggtaactcaccttcatttctactactttgatattcacacaggcaataacccaagtgcagttgttgtggcacgtgctaaccaaacaagtgacat |
42025883 |
T |
|
| Q |
119 |
tcctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgtggttggaaatgcacaagat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
42025884 |
tcctaagaaacattcattgtttggtactgtttatgccattgacaatcctcttagggaaggtcctgaagaaacatcaaatgtagttggaaatgcacaaggt |
42025983 |
T |
|
| Q |
219 |
ctttatgtggcatctctagccaaagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgt |
318 |
Q |
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|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025984 |
ctttatgtggca--tctagccagagtgaagatgtgacacttactatgtatgttgattatgctttcacctctggtgaattaaatggaagctcctttagtgt |
42026081 |
T |
|
| Q |
319 |
tctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaatgtttaggatggccacaggttctgctc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||| |
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| T |
42026082 |
tctttcgaggaatccggtgagggaaccgacgagggaactcgcggtggtcggaggaagaggaaagtttaggatggccactggttttgctc |
42026170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 1252993 - 1253045
Alignment:
| Q |
19 |
caaataaggtaactcaccttcatttctactactttgatattcacacaggcaat |
71 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252993 |
caaataagggaactcaccttcatttctactactttgatattcacacaggcaat |
1253045 |
T |
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