View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_14 (Length: 423)
Name: NF18115_low_14
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 44802434 - 44802035
Alignment:
| Q |
1 |
atgcacatttctagttgatgaaaattctaagatgagttttgatttaatatatcaactcnnnnnnnatgtactttgttaaatgacatgatgttgtcaaata |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
44802434 |
atgcacatttctagttgatgaaaattctaaattgagttttgatttaat----caactctttttttatgaactttgttaaatgacatgatgttgtcaaata |
44802339 |
T |
|
| Q |
101 |
aaattaaaggagatatcagtatcagaatcaagatctactacacagttatgtaacttatgcttaatttgtttatctagttaaagagcaattactccaagac |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44802338 |
aaattaaaggagatatcagtatcagaatgaagatctactacacagttatgtaacttatgcttaatttgtttatcatgttaaagagcaattactccaagac |
44802239 |
T |
|
| Q |
201 |
attgagtattcgagtgctctcacttctcacgtataatttctcaaagtttaatttcattaattaattaatgtagcgaactttagcatttccagtcttagta |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
44802238 |
attgagtattcgagtgctctcacttctcacgtataatttctcaaagtttaatttcattaattaatgt---tagcgaactttagcatttccagtcttagta |
44802142 |
T |
|
| Q |
301 |
ttgacgagttactggaatataatgggatcataaattatcttacaaagttaaccgccattgatacttggttgcaaatatcaccaagaccaggtgcccagcc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44802141 |
ttgacgagttactggaatataatgggatcataaattatcttaaaaagttaaccgccattgatacttggttgcaaatatcacgaagaccaggtgcccagcc |
44802042 |
T |
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