View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_16 (Length: 409)
Name: NF18115_low_16
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 9 - 392
Target Start/End: Complemental strand, 37833285 - 37832898
Alignment:
| Q |
9 |
agcagagataataggggatggtgttttttgttgtcgtactc----acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgt |
104 |
Q |
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| T |
37833285 |
agcagagataataggggatggtgttttttgttgtcgtactcctccacacaaggttggcagggttcatttctatgtaacatgttctaataggttagcatgt |
37833186 |
T |
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| Q |
105 |
agtgaagtgcacgaattcgatttccgagtcaatacttctcaagaaatcaacactgcgggagagaacagaagtcgctttcaatacttttaataaataattt |
204 |
Q |
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| T |
37833185 |
agtgaagtgcatgaattcgatttccgagtcaatacttctcaagaaatcaacactgcgggatagaacagaagtcactttcaatacttttaataaataattt |
37833086 |
T |
|
| Q |
205 |
aaagaattgttatccctggagtatgacttcccacatagtttagattcaattagtggtaatgagaaatctcaaataagaagtaaaagcagttgtttgctca |
304 |
Q |
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| T |
37833085 |
aaagaattgttatccctggagtatgacttcccacatagtttagattcaattagtggtaatgagaaatctcaaataagaagtaaaagcagttgtttgctca |
37832986 |
T |
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| Q |
305 |
tgagggacgatgacaaatgggacaaactactgaaatttactctagagatttattttgttgttagtttcgtttaagacattgagctagt |
392 |
Q |
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| T |
37832985 |
tgagggacgatgacaaatgggacaaactactgaaatttactctagagatttattttgttgttagtttcgtttaagacattgagctagt |
37832898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 350
Target Start/End: Complemental strand, 37841759 - 37841454
Alignment:
| Q |
50 |
acacaaagctggcagggttcatttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttccgagtcaatacttctcaagaa |
149 |
Q |
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| T |
37841759 |
acacaaggctggaagggttcctttctatgtaacatgttctaataggttagcatgtagtgaagtgcgcgaattcgatttccgagtcaattatactcaagaa |
37841660 |
T |
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| Q |
150 |
atcaacactgcgggagagaacagaagtcg-----ctttcaatacttttaataaataatttaaagaattgttatccctggagtatgacttcccacatagtt |
244 |
Q |
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| T |
37841659 |
gacaacactgccggtgagaccagaagcaggaatacttatgatacttttaataagagatttggagaatttttgtcccaagagcatgacttccctcgagttt |
37841560 |
T |
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| Q |
245 |
tagattcaattagtggtaatgagaaatctcaaataagaagtaaaagcagttgtttgctcatgagggacgatgacaaatgggacaaactactgaaatttac |
344 |
Q |
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| T |
37841559 |
tagattcaattagtgtgaatgagaaatctcaactgagaagtaaaattggttctttgcttggtaggaaggacgatgaatgggatgaactactgaaatttac |
37841460 |
T |
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| Q |
345 |
tctaga |
350 |
Q |
| |
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|||||| |
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| T |
37841459 |
tctaga |
37841454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 1655620 - 1655677
Alignment:
| Q |
71 |
tttctatgtaacatgttctaataggttagcatgtagtgaagtgcacgaattcgatttc |
128 |
Q |
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| T |
1655620 |
tttctatgtaacatgtgccaataggttagcttgcagtgaagtgcgtgaatttgatttc |
1655677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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