View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_2 (Length: 706)
Name: NF18115_low_2
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 648; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 648; E-Value: 0
Query Start/End: Original strand, 11 - 698
Target Start/End: Complemental strand, 42063439 - 42062752
Alignment:
| Q |
11 |
catcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcca |
110 |
Q |
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| T |
42063439 |
catcatcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtcca |
42063340 |
T |
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| Q |
111 |
tgagaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacatt |
210 |
Q |
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| T |
42063339 |
tgagaataaaaaatgggttacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaattcctctgcttacatt |
42063240 |
T |
|
| Q |
211 |
gctcttgtggtgactggtaccggtaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacctg |
310 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42063239 |
gctcttgtggtgactggtaccggcaaagcggatgcagttcactctgcactacgcggatctgaaacatctgaaaagcttcctgctgcattggtttcacctg |
42063140 |
T |
|
| Q |
311 |
aaggggagttgaaatggttcttggacaaaggtgcagcgtcaaagctgtagatcctaaagctaagccagttaatctatgtgttgtgctcgtgtttattttg |
410 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42063139 |
aaggggagttgaaatggttcttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttattttg |
42063040 |
T |
|
| Q |
411 |
gcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgcagcaataagagga |
510 |
Q |
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| T |
42063039 |
gcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagagga |
42062940 |
T |
|
| Q |
511 |
taaagtgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattaatgtgaagtaactcaccctccccct |
610 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
42062939 |
taaagtgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattattgtgaagcaactcaccctccccct |
42062840 |
T |
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| Q |
611 |
catccttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
698 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42062839 |
catctttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
42062752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 14 - 195
Target Start/End: Complemental strand, 9514516 - 9514335
Alignment:
| Q |
14 |
catcagccagtggatttccaaaatttgatctcatgttgcttggcatgggtcctgatgggcatgtagcttctctgttcccaggtcaccctcttgtccatga |
113 |
Q |
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||||| ||| |||||| |||||||||||||||||| | || || |||||||| ||||| ||||| || ||| | ||||||||||| ||||| |||| || |
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| T |
9514516 |
catcaaccaatggattaccaaaatttgatctcatgctcctaggtatgggtccggatggacatgttgcatctttattcccaggtcatgctcttctccaaga |
9514417 |
T |
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| Q |
114 |
gaataaaaaatgggtcacctcaattaacgactcgccaaaaccacccccagagagaataacatttacctttcccgtgatcaat |
195 |
Q |
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| || | |||||||| || | | | ||||| ||||||||||| |||||||||| || || || ||||| ||||||||| |
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| T |
9514416 |
ggatcagaaatgggttactttcctcactgactcaccaaaaccaccatcagagagaattactttcacttttccagtgatcaat |
9514335 |
T |
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