View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18115_low_20 (Length: 283)
Name: NF18115_low_20
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 7504404 - 7504661
Alignment:
| Q |
18 |
aagatttcatgtcttttatttttcattatataaaacaatcatcaagtccaaacctttcatcttttttccatctcaactccatgtccaaccttcttaacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7504404 |
aagatttcatgtcttttatttttcattatataaaacaatcatcaagtccaaacctttcatcttttttccatctcaactccatgtccaaccttcttaacaa |
7504503 |
T |
|
| Q |
118 |
gcaacaaccttcttaaggtcaagatttacaacaaggtacaacctgcttcgactaatctattaggttgcctactagctcctatgacctgaagtacccctcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7504504 |
gcaacaaccttcttaaggtcaagatttacaacaaggtacaacctgcttcgactaatctattaggttgcctactagctcctatgacctgaagtacccatcc |
7504603 |
T |
|
| Q |
218 |
taaccaaatcataccatatgatcactatcattattttgagacttcattttgttcattt |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7504604 |
taaccaaatcataccatatgatcactatcattattttgagacttcattttgttcattt |
7504661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 7531870 - 7531955
Alignment:
| Q |
20 |
gatttcatgtcttttatttttcattatataaaacaatcatcaagtccaaacctttcatcttttttccatctcaactccatgtccaac |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| |||| |||||||||||||| |
|
|
| T |
7531870 |
gattccatgtcttttatttttcattatataaaacaattatcaagtccaagactttcatc-tttttcaatctagactccatgtccaac |
7531955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 7498561 - 7498624
Alignment:
| Q |
20 |
gatttcatgtcttttatttttcattatataaaacaatcatcaagtccaaacctttcatcttttt |
83 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||| || || ||||||||||||| |
|
|
| T |
7498561 |
gattccatgtcttttatttttcattatataaaacaattatcaaatctaagactttcatcttttt |
7498624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 7524010 - 7524073
Alignment:
| Q |
20 |
gatttcatgtcttttatttttcattatataaaacaatcatcaagtccaaacctttcatcttttt |
83 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||| | |||||||| ||||||||||||| |
|
|
| T |
7524010 |
gattccatgtcttttatttttcattatataaaataattacaaagtccaagactttcatcttttt |
7524073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 222
Target Start/End: Original strand, 7524188 - 7524252
Alignment:
| Q |
158 |
acctgcttcgactaatctattaggttgcctactagctcctatgacctgaagtacccctcctaacc |
222 |
Q |
| |
|
||||||||||||||||||| ||||| || | ||| |||||| |||| ||||||||| ||| |||| |
|
|
| T |
7524188 |
acctgcttcgactaatctagtaggtcgcttgctacctcctaggaccagaagtacccatcccaacc |
7524252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University