View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_25 (Length: 240)
Name: NF18115_low_25
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_25 |
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| [»] chr3 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 38237810 - 38237572
Alignment:
| Q |
1 |
ttatactccatatccagcaaaactatggtttcttcgaaatgactcaggggttggaattgaagaccagaactttataactggattacatactacaaactca |
100 |
Q |
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| T |
38237810 |
ttatactccatctccagcaaaactatggtttctttgaaatgacttgggggttggaattgaagaccaggactttgtaactggattacatactacaaactca |
38237711 |
T |
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| Q |
101 |
tgatcattaatggtgtgaccaacaactagaccattactagaagcttgagacacaaattgaatttgataggaaactcaaagcttcgttaggggcatcagaa |
200 |
Q |
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| T |
38237710 |
tgatcattaatggtgtgaccaacaactagaccattactagaagc-tgagacacaaactgaatttgataggaaactcaaagcttcgttaggggcaccagaa |
38237612 |
T |
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| Q |
201 |
gattgtcggttttgaggtaaagagtgtaactctactattt |
240 |
Q |
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| T |
38237611 |
gattgtcggttttgaggtaaagagtgtaactctactattt |
38237572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 38249050 - 38248913
Alignment:
| Q |
98 |
tcatgatcattaatggtgtgaccaacaactagaccattactagaagcttgagacacaaattgaatttgataggaaactcaaagcttcgttaggggcatca |
197 |
Q |
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| T |
38249050 |
tcatgatcattaatggtgtgaccaacaactagaccattactagaagcta-agacacaaattgaatttgatagaaaactcaaagctttgttaggggcaccc |
38248952 |
T |
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| Q |
198 |
gaagattgtcggttttgaggtaaagagtgtaactctact |
236 |
Q |
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| T |
38248951 |
gaagattgtcggttttcaggtaaagaatgcaactgtact |
38248913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 38254257 - 38254065
Alignment:
| Q |
18 |
caaaactatggtttcttcgaaatgactcaggggttggaattgaa-gaccagaactttataactggattacatactacaaactca---------tgatcat |
107 |
Q |
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| T |
38254257 |
caaaactatggtttctttgaaatgactcaggagtaggaagtgaaagaccaggacttagtaactggattacatattacaaactcaatcggatcatgatcat |
38254158 |
T |
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| Q |
108 |
taatggtgtgaccaacaactagaccattactagaagcttgagacacaaattgaatttgataggaaactcaaagcttcgttaggggcatcagaag |
201 |
Q |
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| T |
38254157 |
taatgatgtgaccaacaactagaccattactagaagc-taagacagaaactgaatttgataggaaactcaaagctttgttaggggcaccagaag |
38254065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 22177207 - 22176974
Alignment:
| Q |
14 |
ccagcaaaactatggtttcttcgaaatgactcaggggttggaattgaagaccagaactttataactggattacatactacaaactca---------tgat |
104 |
Q |
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| T |
22177207 |
ccagcaaaactatgatttctttgaaatgactcaggagtaggaagtgaagaccaggactttgtaactagattacatattacaaactcaatccaatcatgac |
22177108 |
T |
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| Q |
105 |
cattaatggtgtgaccaacaactagaccattactagaagcttgagacacaaattgaatttgataggaaactcaaagcttcgttaggggcatcagaagatt |
204 |
Q |
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| T |
22177107 |
cattagtggtgtc-ccaacaactagaccattactagaaccta-agacacaaactgaatttgataggaatctcaaagcttgtttaggggcaccagaagatt |
22177010 |
T |
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| Q |
205 |
gtcggttttgaggtaaagagtgtaactctactattt |
240 |
Q |
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|||| | |||||| ||||| ||| |||||||||||| |
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| T |
22177009 |
gtcgatcttgaggcaaagaatgtgactctactattt |
22176974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 20656785 - 20656606
Alignment:
| Q |
15 |
cagcaaaactatggtttcttcgaaatgactcaggggttggaattgaagaccagaactttataactggattacatactacaaactca---------tgatc |
105 |
Q |
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|||||||||||||||||||| ||||||||| | |||| |||| ||||||||| ||||| |||||||||||||| | |||||||| ||||| |
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| T |
20656785 |
cagcaaaactatggtttctttgaaatgactaacgggtgggaagtgaagaccaagactttgtaactggattacattttccaaactcaatcaaatcatgatc |
20656686 |
T |
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| Q |
106 |
attaatggtgtgaccaacaactagaccattactagaagcttgagacacaaattgaatttgataggaaactcaaagcttcgt |
186 |
Q |
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| T |
20656685 |
attaatggtgtgaccaacaactagaccattactagaagc-taagacacaaactgaatttgataggaaactcaaagcatcgt |
20656606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 20656321 - 20656460
Alignment:
| Q |
15 |
cagcaaaactatggtttcttcgaaatgactcaggggttggaattgaagaccagaactttataactggattacatactacaa---------actcatgatc |
105 |
Q |
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||||||||||||| |||||| |||||||||||||||| |||| |||||||||| ||||| ||||||||||||||| ||||| | |||||||| |
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| T |
20656321 |
cagcaaaactatgatttctttgaaatgactcaggggtaggaagtgaagaccaggactttgtaactggattacatattacaatttcaatcgaatcatgatc |
20656420 |
T |
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| Q |
106 |
attaatggtgtgaccaacaactagaccattactagaagct |
145 |
Q |
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| T |
20656421 |
attaatggtgtgaccaacaactagatcattactataagct |
20656460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 12036252 - 12036337
Alignment:
| Q |
15 |
cagcaaaactatggtttcttcgaaatgactcaggggttggaattgaagaccagaactttataactggattacatactacaaactca |
100 |
Q |
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|||||||||||||||||||| |||||||||| ||||| |||| |||||||||| ||||| |||||| |||||||| |||||||||| |
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| T |
12036252 |
cagcaaaactatggtttctttgaaatgactccggggtaggaagtgaagaccaggactttgtaactgaattacatattacaaactca |
12036337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 145
Target Start/End: Complemental strand, 12036430 - 12036383
Alignment:
| Q |
98 |
tcatgatcattaatggtgtgaccaacaactagaccattactagaagct |
145 |
Q |
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|||||||| |||||||||||||||||||||||| |||||||| ||||| |
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| T |
12036430 |
tcatgatcgttaatggtgtgaccaacaactagatcattactacaagct |
12036383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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