View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_26 (Length: 238)
Name: NF18115_low_26
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 38237391 - 38237170
Alignment:
| Q |
1 |
aagcaatattgtcttgagaaacttctaaattgagaatgatgaaaaacaaagaaatctagtggaagatggtggagggattgtaaaaaggaggaatagnnnn |
100 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38237391 |
aagcaatattgtcttgagaaacttccatgttgagaatgatgaaaaacaaagaaatctagtggaagatggtggagggattgtaaaaaggaggaatagaaaa |
38237292 |
T |
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| Q |
101 |
nnnnnnnnnnnnnntaacaattggaagaggtgatggaactgtgaaacaaagtgttttttctgagttgctttaggttgttttgagatgcatgtatatatag |
200 |
Q |
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| T |
38237291 |
aacaaaaagcaaaataacaattggaagaggtgatggaactgtgaaacaaagtgttttttctgagttgctttaggttgttttgagatgcatgtatatatag |
38237192 |
T |
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| Q |
201 |
attatagagccctaacaatatc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
38237191 |
attatagagccctaacaatatc |
38237170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 38253860 - 38253662
Alignment:
| Q |
1 |
aagcaatattgtcttgagaaacttctaaattgagaatgatgaaaaacaaagaaatctagtggaagatggtggagggattgtaaaaaggaggaatagnnnn |
100 |
Q |
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|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38253860 |
aagcaatattttcttgagaaacttccatgttgagaatgatgaaaaacaaagaaatctagtggaagatggtggagggattgtaaaaaggaggaatagaaaa |
38253761 |
T |
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| Q |
101 |
nnnnnnnnnnnnnntaacaattggaagaggtgatggaactgtgaaacaaagtgttttttctgagttgctttaggttgttttgagatgcatgtatatata |
199 |
Q |
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| T |
38253760 |
aacaaaaagcaaaataacaattggaagaggtgatggaactgtgaaacaaagtgttttttctgagttgctttaggttgttttgagatgcatgtatatata |
38253662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 38253659 - 38253622
Alignment:
| Q |
162 |
gagttgctttaggttgttttgagatgcatgtatatata |
199 |
Q |
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| T |
38253659 |
gagttgctttaggttgttttgagatgcatgtatatata |
38253622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 22176787 - 22176568
Alignment:
| Q |
10 |
tgtcttgagaaacttctaaattgagaatgatgaaaaacaaagaaatctagtggaagatggtggagggattgtaaaaaggaggaatagnnnnnnnnnnnnn |
109 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22176787 |
tgtcttgagaaacttccatgttgagaatgatgaaaaacaaagaaatctagtggaagatggtggagggattgtaaaaaggaggaatagaaaaaacaaaaag |
22176688 |
T |
|
| Q |
110 |
nnnnntaacaattggaagaggtgatg-------gaactgtgaaacaaagtgttttttctgagttgctttaggttgttttgagatgcatgtatatatagat |
202 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| | || |
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| T |
22176687 |
caaaataacaattggaagatgtgatggaactgtgaactgtgaaacaaagtgttttttctgagttgctttaagttgttttgagacgcatgtatatagaaat |
22176588 |
T |
|
| Q |
203 |
tatagagccctaacaatatc |
222 |
Q |
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|||||||||||||||||||| |
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| T |
22176587 |
tatagagccctaacaatatc |
22176568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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