View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_30 (Length: 220)
Name: NF18115_low_30
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_30 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 33912392 - 33912582
Alignment:
| Q |
16 |
caaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattattgtacagagactgtttgaacattgtggatatccggtgcct |
115 |
Q |
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| T |
33912392 |
caaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattatggtacagagactatttgaacatggtggatatccggtgcct |
33912491 |
T |
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| Q |
116 |
gaatatcaaagtgacgaagaagcagttaatggaatgggaaatttactgaggaaaattgagggaagtccaatattgttagtcctggatgatg |
206 |
Q |
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| T |
33912492 |
gagtatcaaagtgacgaagaagcagttaatggaatgggaaatttactgaggaaaattgagggaagtccaatattgttagtcctggatgatg |
33912582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 33941132 - 33941319
Alignment:
| Q |
17 |
aaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattattgtacagagactgtttgaacattgtggatatccggtgcctg |
116 |
Q |
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| T |
33941132 |
aaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgctgaagattattgtagagagattatttgaacattgcggatatccggtgcctg |
33941231 |
T |
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| Q |
117 |
aatatcaaagtgacgaagaagcagttaatggaatgggaaatttactgaggaaaattgagggaagtccaatattgttagtcctggatga |
204 |
Q |
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| T |
33941232 |
agtaccaaagtgatgaagatgcggtaaatggattgggacttttgctgaggaaaattgagggaagtccaatattgttagtcctggatga |
33941319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 33991199 - 33991317
Alignment:
| Q |
17 |
aaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattattgtacagagactgtttgaacattgtggatatccggtgcctg |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||| | |||||||||| |||||||| ||||||| |
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| T |
33991199 |
aaattcaaggaaaacattatatttgtcaccttctcaaaaacacccatgttgaagactattgtagagagaataattgaacattgcggatatccagtgcctg |
33991298 |
T |
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| Q |
117 |
aatatcaaagtgacgaaga |
135 |
Q |
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| T |
33991299 |
agtttcaaagtgatgaaga |
33991317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 33951679 - 33951868
Alignment:
| Q |
17 |
aaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattattgtacagagactgtttgaacattgtggatatccggtgcctg |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||| | | |||||||||||||||| ||||||| |
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| T |
33951679 |
aaattcaaggaaaacattatatttgtcaccttctcaaaaacacccatgctgaagactattgtagagagaatacatcaacattgtggatatccagtgcctg |
33951778 |
T |
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| Q |
117 |
aatatcaaagtgacgaagaagcagttaatggaatgggaaatttactgaggaaaattgagggaagtccaatattgttagtcctggatgatg |
206 |
Q |
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| T |
33951779 |
agtttcaaagtgatgaagatgctgtcaataggttaggacttctgttgaagaaagttgagggaagtccactattgttggttctggatgatg |
33951868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 33974280 - 33974469
Alignment:
| Q |
17 |
aaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattattgtacagagactgtttgaacattgtggatatccggtgcctg |
116 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||| | | |||||||||||||| | ||||||| |
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| T |
33974280 |
aaattcaaggaaaacattatatttgtcaccttctcaaaaacacccatgctgaagactattgtagagagaatacatcaacattgtggatattcagtgcctg |
33974379 |
T |
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| Q |
117 |
aatatcaaagtgacgaagaagcagttaatggaatgggaaatttactgaggaaaattgagggaagtccaatattgttagtcctggatgatg |
206 |
Q |
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| T |
33974380 |
agtttcaaagtgatgaagatgcagtcaataagttaggacttttgttgaagaaagttgagggaagtccactattgttggttctggatgatg |
33974469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 11337 - 11512
Alignment:
| Q |
17 |
aaattcaaggaaaacattatatttgtaaccttctcaaaaacacccatgttgaagattattgtacagagactgtttgaacattgtggatatccggtgcctg |
116 |
Q |
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|||||||||||||| ||||||||||| ||||| || ||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||| | ||||| |
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| T |
11337 |
aaattcaaggaaaatattatatttgtcaccttatcgaaaacacccatgttgaagactattgtagagagactatttgaacattgtggatatccagggcctg |
11436 |
T |
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| Q |
117 |
aatatcaaagtgacgaagaagcagttaatggaatgggaaatttactgaggaaaattgagggaagtccaatattgtt |
192 |
Q |
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||| |||||| || ||||| || || || || ||| | ||| |||| ||| |||||||||||||| ||||||| |
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| T |
11437 |
aatttcaaagagatgaagatgctgtccatagattggaacttttgctgaaaaaatttgagggaagtccactattgtt |
11512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 190
Target Start/End: Original strand, 2764118 - 2764246
Alignment:
| Q |
64 |
gttgaagattattgtacagagactgtttgaacattgtggatatccggtgcctgaa--tatcaaagtgacgaagaagcagttaatggaatgggaaatttac |
161 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||| || ||| | | || |||| | ||||| ||||||||| || | ||| ||| | |
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| T |
2764118 |
gttgaagattattgtagagagactatttgaacattgtggatatcgagttcctatatgtttccaagtaatgaagatgcagttaatagatttggactttttc |
2764217 |
T |
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| Q |
162 |
tgaggaaaattgagggaagtccaatattg |
190 |
Q |
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| T |
2764218 |
tgaagaaaattgagggaagtacaatattg |
2764246 |
T |
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