View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18115_low_31 (Length: 219)
Name: NF18115_low_31
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18115_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 31949728 - 31949916
Alignment:
| Q |
19 |
aataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatct |
118 |
Q |
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| T |
31949728 |
aataaagatcaaacttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatct |
31949827 |
T |
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| Q |
119 |
ataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcactgttgattatgtggggtcctttgctt |
207 |
Q |
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| T |
31949828 |
ataggcattggtgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcagtgttgattatgtggggtcctttgctt |
31949916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 29707581 - 29707501
Alignment:
| Q |
74 |
tgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgattt |
154 |
Q |
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| T |
29707581 |
tgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaattt |
29707501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 27510183 - 27510027
Alignment:
| Q |
22 |
aaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctata |
121 |
Q |
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| T |
27510183 |
aaagatcaaattaggtgtcacgggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgca |
27510084 |
T |
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| Q |
122 |
ggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
178 |
Q |
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| T |
27510083 |
agcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattag |
27510027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 27271262 - 27271379
Alignment:
| Q |
61 |
ggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcag |
160 |
Q |
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| T |
27271262 |
ggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcctccatcagcaagcactggaggaaatggtccatcttatcaatttaagcac |
27271361 |
T |
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| Q |
161 |
cttttctgaaagaattag |
178 |
Q |
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| T |
27271362 |
tatttctggaagaattag |
27271379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 178
Target Start/End: Original strand, 39210750 - 39210906
Alignment:
| Q |
22 |
aaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctata |
121 |
Q |
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| T |
39210750 |
aaagatcaaattaggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgca |
39210849 |
T |
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| Q |
122 |
ggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
178 |
Q |
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| T |
39210850 |
agcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattag |
39210906 |
T |
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