View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18115_low_5 (Length: 595)

Name: NF18115_low_5
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18115_low_5
NF18115_low_5
[»] chr7 (17 HSPs)
chr7 (168-339)||(20117558-20117729)
chr7 (17-170)||(20117191-20117345)
chr7 (536-584)||(20117781-20117829)
chr7 (377-440)||(22786157-22786220)
chr7 (377-450)||(25428482-25428555)
chr7 (377-449)||(45909561-45909633)
chr7 (377-450)||(13919884-13919957)
chr7 (381-436)||(2520643-2520698)
chr7 (377-440)||(14795137-14795200)
chr7 (377-440)||(15242129-15242192)
chr7 (380-450)||(26190007-26190077)
chr7 (374-439)||(9759251-9759316)
chr7 (371-440)||(19422945-19423014)
chr7 (377-450)||(19840888-19840961)
chr7 (377-450)||(26703443-26703516)
chr7 (368-440)||(25428590-25428662)
chr7 (377-405)||(31502484-31502512)
[»] chr2 (17 HSPs)
chr2 (451-584)||(21294310-21294440)
chr2 (377-440)||(3804590-3804653)
chr2 (371-440)||(15508914-15508983)
chr2 (377-450)||(28898040-28898113)
chr2 (371-440)||(31395556-31395625)
chr2 (371-440)||(34511750-34511819)
chr2 (367-440)||(42182885-42182958)
chr2 (377-440)||(1110312-1110375)
chr2 (371-450)||(15509018-15509097)
chr2 (371-436)||(12098982-12099047)
chr2 (376-440)||(1107043-1107107)
chr2 (389-440)||(19639111-19639162)
chr2 (389-440)||(19837704-19837755)
chr2 (377-440)||(23463937-23464000)
chr2 (377-440)||(28898148-28898211)
chr2 (377-440)||(45554573-45554636)
chr2 (380-440)||(37228613-37228673)
[»] chr5 (18 HSPs)
chr5 (377-450)||(40971456-40971529)
chr5 (377-440)||(42224702-42224765)
chr5 (377-450)||(6263985-6264058)
chr5 (371-440)||(24915169-24915236)
chr5 (371-440)||(24991000-24991067)
chr5 (367-440)||(32050421-32050494)
chr5 (377-440)||(4959284-4959347)
chr5 (376-435)||(26227005-26227064)
chr5 (381-440)||(27592563-27592622)
chr5 (377-440)||(30325985-30326048)
chr5 (381-428)||(35013712-35013759)
chr5 (453-487)||(630741-630775)
chr5 (382-440)||(1649561-1649619)
chr5 (371-437)||(8912627-8912695)
chr5 (376-440)||(13456169-13456231)
chr5 (379-424)||(13975481-13975526)
chr5 (377-450)||(42224594-42224667)
chr5 (380-440)||(40971564-40971624)
[»] chr6 (15 HSPs)
chr6 (371-450)||(10060963-10061042)
chr6 (377-440)||(10060865-10060928)
chr6 (377-440)||(35128834-35128897)
chr6 (379-440)||(31116235-31116296)
chr6 (371-435)||(17226645-17226709)
chr6 (377-440)||(34905342-34905405)
chr6 (376-414)||(16436203-16436241)
chr6 (377-450)||(19090218-19090291)
chr6 (377-450)||(19737438-19737511)
chr6 (371-435)||(12753758-12753822)
chr6 (376-412)||(12794953-12794989)
chr6 (380-440)||(19090326-19090386)
chr6 (396-440)||(21987317-21987361)
chr6 (381-433)||(32439486-32439538)
chr6 (376-424)||(32598951-32598999)
[»] chr3 (15 HSPs)
chr3 (377-440)||(5452171-5452234)
chr3 (377-450)||(38928012-38928085)
chr3 (377-450)||(24748913-24748986)
chr3 (378-438)||(50661635-50661695)
chr3 (395-438)||(3313985-3314028)
chr3 (377-438)||(27243051-27243112)
chr3 (376-440)||(46237157-46237221)
chr3 (377-440)||(13809088-13809150)
chr3 (377-440)||(20493556-20493619)
chr3 (377-440)||(28529259-28529322)
chr3 (370-440)||(39185236-39185306)
chr3 (371-440)||(45515606-45515675)
chr3 (396-440)||(20791321-20791365)
chr3 (380-440)||(37600241-37600301)
chr3 (376-440)||(40715973-40716037)
[»] chr8 (11 HSPs)
chr8 (379-450)||(1205931-1206002)
chr8 (377-439)||(12212128-12212190)
chr8 (377-439)||(12456556-12456618)
chr8 (377-440)||(1205833-1205896)
chr8 (371-440)||(35151840-35151909)
chr8 (377-440)||(43026299-43026360)
chr8 (377-426)||(35151733-35151782)
chr8 (371-439)||(4674911-4674978)
chr8 (376-416)||(11574166-11574206)
chr8 (376-440)||(28211889-28211952)
chr8 (380-440)||(41727439-41727499)
[»] chr4 (16 HSPs)
chr4 (377-440)||(39016669-39016732)
chr4 (371-449)||(51206148-51206226)
chr4 (377-450)||(30866935-30867008)
chr4 (376-440)||(39016777-39016841)
chr4 (377-440)||(8108962-8109025)
chr4 (377-440)||(39471163-39471226)
chr4 (367-440)||(37315674-37315747)
chr4 (380-437)||(47237855-47237912)
chr4 (380-440)||(33996046-33996106)
chr4 (377-437)||(40812043-40812103)
chr4 (376-435)||(52671948-52672007)
chr4 (382-439)||(6540234-6540291)
chr4 (377-450)||(13070044-13070117)
chr4 (371-440)||(50571864-50571933)
chr4 (372-440)||(2088776-2088844)
chr4 (380-424)||(48608089-48608133)
[»] chr1 (25 HSPs)
chr1 (377-440)||(11135745-11135808)
chr1 (377-439)||(50424869-50424931)
chr1 (377-440)||(4578688-4578749)
chr1 (377-440)||(13388340-13388403)
chr1 (371-450)||(14093998-14094077)
chr1 (384-450)||(43832373-43832439)
chr1 (377-450)||(11135843-11135916)
chr1 (377-450)||(41095612-41095685)
chr1 (377-437)||(25543346-25543406)
chr1 (376-440)||(28218159-28218223)
chr1 (380-440)||(32848694-32848754)
chr1 (377-440)||(19101712-19101775)
chr1 (377-440)||(22540374-22540437)
chr1 (377-440)||(41095720-41095783)
chr1 (377-440)||(41918001-41918064)
chr1 (377-439)||(13114673-13114735)
chr1 (377-450)||(29418585-29418659)
chr1 (377-450)||(11430545-11430617)
chr1 (371-440)||(44739118-44739187)
chr1 (380-440)||(11430450-11430510)
chr1 (377-437)||(13114784-13114844)
chr1 (396-440)||(15523235-15523279)
chr1 (396-440)||(15531229-15531273)
chr1 (372-408)||(32211783-32211819)
chr1 (376-439)||(43977373-43977434)


Alignment Details
Target: chr7 (Bit Score: 160; Significance: 6e-85; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 168 - 339
Target Start/End: Original strand, 20117558 - 20117729
Alignment:
Q  168 gttttatctataattaccattttcttattttcaacaaattaatcaatgaatcttatcgtgtttgaatgacaaacagatgacccggatgtttgtcgaagaa 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20117558 gttttatctataattaccattttcttattttcaacaaattaatcaatcaatcttatcgtttttgaatgacaaacagatgacccggatgtttgtcgaagaa 20117657  T
Q  268 ccacttgcacaagagggttgaatgatatacactagaagttcaacctcaaaaataaaatcatttcagacaata 339  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20117658 ccacttgcacgagagggttgaatgatatacactagaagttcaacctcaaaaataaaatcatttcagacaata 20117729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 20117191 - 20117345
Alignment:
Q  17 cacacaactaataagagatcataatcat-atgtatacgagattaggagatgacgtctgcttggctcggtctcccttcagaaaagaataattattgttata 115  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  20117191 cacacaactaataagagatcataatcattatgtatacgagattaggagatgacatctgcttggctcggtctaccttcagaaaagaataattattgttata 20117290  T
Q  116 caacnnnnnnnnnagtaatttcattagcattacacgtgaacaacgtggtaaagtt 170  Q
    ||||         ||||||||||||||||||||||||||||||||||||||||||    
T  20117291 caactttttttttagtaatttcattagcattacacgtgaacaacgtggtaaagtt 20117345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 536 - 584
Target Start/End: Original strand, 20117781 - 20117829
Alignment:
Q  536 aaagaaaccattgataaatttcagttttaattaagtgatatcggttcat 584  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20117781 aaagaaaccattgataaatttcagttttaattaagtgatatcagttcat 20117829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 22786157 - 22786220
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| | |||||||| || || ||||| |||||||||||||||||||||||    
T  22786157 tagcaacactctcttttgagcactctctctagcactcacttttttattaggtgaaatcaatgta 22786220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 25428482 - 25428555
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| | ||||||||||| || ||||| ||||||| | | ||||||||||| |||||||||    
T  25428482 tagcaacactctcttttgagcactctctttagcactcactcttttattggataaaatcaatgtaggatctacac 25428555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 449
Target Start/End: Complemental strand, 45909633 - 45909561
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctaca 449  Q
    ||||||||||||||||| || ||||||| ||||| ||||| ||||||| ||| ||||||||||| || |||||    
T  45909633 tagcaacactctcttttgaatactctctctaacactcactcttttattgggtaaaatcaatgtaggacctaca 45909561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 13919957 - 13919884
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| | |||||||| || || |||||  |||||| ||||||||||||||| || ||||||    
T  13919957 tagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgtaggacctacac 13919884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 436
Target Start/End: Original strand, 2520643 - 2520698
Alignment:
Q  381 aacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaa 436  Q
    ||||||||||||| ||||||||||  |||| ||||| ||||||| |||||||||||    
T  2520643 aacactctcttttcaacactctctccaacactcactcttttattgggtgaaatcaa 2520698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 14795137 - 14795200
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| ||||| |||||||||| || || ||||| ||||||| | |||||||||||||    
T  14795137 tagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgta 14795200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 15242129 - 15242192
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| ||||| |||||||||| || || ||||| ||||||| | |||||||||||||    
T  15242129 tagcaacactcacttttcaacactctctctatcagtcacttttttattggatgaaatcaatgta 15242192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 380 - 450
Target Start/End: Complemental strand, 26190077 - 26190007
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    |||||||||||||| |||||| ||| ||||| ||||| ||||||| ||| ||||||| ||| || ||||||    
T  26190077 caacactctcttttgaacactttctctaacactcactcttttattgggtaaaatcaacgtaggacctacac 26190007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 439
Target Start/End: Complemental strand, 9759316 - 9759251
Alignment:
Q  374 tattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    |||||||||||||||| ||| |||||||  | |||||   ||||||||||||||||||| ||||||    
T  9759316 tattagcaacactctcattttaacactcattctaacacctactattttattaggtgaaaccaatgt 9759251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 19423014 - 19422945
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||| |||||||||||| ||||| |||||||||| || || ||||| ||| ||| | |||||||||||||    
T  19423014 gaatgttagcaacactcacttttcaacactctctctatcactcactctttcattggatgaaatcaatgta 19422945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 19840888 - 19840961
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    |||||||||||| |||| | |||||||| || || ||||| ||||||| |||||||||||| || || ||||||    
T  19840888 tagcaacactctattttgagcactctctctagcactcactcttttattgggtgaaatcaatataggacctacac 19840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 26703443 - 26703516
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||| | | |||||||| || || ||||| ||||||| |||||||| |||||| || ||||||    
T  26703443 tagcaacactctcttctgagcactctctctagcactcactcttttattgggtgaaataaatgtaggacctacac 26703516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 368 - 440
Target Start/End: Complemental strand, 25428662 - 25428590
Alignment:
Q  368 gatgaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||  ||||||||||||||||| | |||||| ||||  | ||||| |||||||  ||||||||||||||    
T  25428662 gatgaatgctagcaacactctcttttgagcactctttttagtactcactcttttattgtgtgaaatcaatgta 25428590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 405
Target Start/End: Original strand, 31502484 - 31502512
Alignment:
Q  377 tagcaacactctcttttaaacactctctt 405  Q
    |||||||||||||||||||||||||||||    
T  31502484 tagcaacactctcttttaaacactctctt 31502512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 451 - 584
Target Start/End: Complemental strand, 21294440 - 21294310
Alignment:
Q  451 ccatttctgtgaaatacatttagaataacttgtgcatatgcagtaatcaaaagtgcattcatcattagataataataatcacgttaaagaaaccattgat 550  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||   |||||||||||||||||||| ||||    
T  21294440 ccatttctgtgaaatacctttagaataacttgtgcatatgcagcaatcaaaagtgcattcatcattagataa---taatcacgttaaagaaaccaatgat 21294344  T
Q  551 aaatttcagttttaattaagtgatatcggttcat 584  Q
    ||||||||||||| ||||||| ||||||||||||    
T  21294343 aaatttcagttttgattaagtcatatcggttcat 21294310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 3804590 - 3804653
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||| |||||| ||||| |||||||||||||||||||||| ||||||| | |||||||||||||    
T  3804590 tagctacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgta 3804653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 15508914 - 15508983
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||| |||||||||||||||||| |||||||| | ||||| ||||| |||||||  ||||||||||||||    
T  15508914 gaatgttagcaacactctcttttgaacactctttctaacactcactcttttattgagtgaaatcaatgta 15508983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 28898040 - 28898113
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| |  |||||||||| || ||||| ||||||| | ||||||||||||| |||||||||    
T  28898040 tagcaacactctcttttgagtactctctttagcactcactcttttattggatgaaatcaatgtaggatctacac 28898113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 31395625 - 31395556
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||| |||||||||||||||||| | ||||||||||| || |||||  |||||| |||||||||||||||    
T  31395625 gaatgttagcaacactctcttttgagcactctctttagcactcactcctttattgggtgaaatcaatgta 31395556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 34511750 - 34511819
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||| ||| |||||||||||| | || ||||||||||||||| | ||||||| |||||||||||||||    
T  34511750 gaatatcagcgacactctcttttcagcattctctttaacattcaattttttattgggtgaaatcaatgta 34511819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 367 - 440
Target Start/End: Original strand, 42182885 - 42182958
Alignment:
Q  367 agatgaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||  ||||||||||||||||| | |||||||| || || ||||| ||||||| |||||||||||||||    
T  42182885 agatgaatgctagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgta 42182958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 1110375 - 1110312
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| |||| | |||||| | ||||||||||| ||||||| |||||||||||||||    
T  1110375 tagcaacactcttttttgagcactctttctaacattcactcttttattgggtgaaatcaatgta 1110312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 15509097 - 15509018
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    |||| |||||||||||||||||| | |||||||| || || | ||| ||| ||| ||||||||||||||| |||||||||    
T  15509097 gaatgttagcaacactctctttttagcactctctatatcacttactctttaattgggtgaaatcaatgtaggatctacac 15509018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 371 - 436
Target Start/End: Complemental strand, 12099047 - 12098982
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaa 436  Q
    |||| |||||||||||||||||| |||  |||||||| ||||| |||||||||| | |||||||||    
T  12099047 gaatgttagcaacactctcttttcaactttctctttagcattcgctattttatttgatgaaatcaa 12098982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 1107043 - 1107107
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||||||| | |||||||| || ||  |||| ||||||| |||||||||||||||    
T  1107043 ttagcaacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgta 1107107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 19639111 - 19639162
Alignment:
Q  389 cttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||| ||||||||||  | |||||||||||||||||| |||||||||||||    
T  19639111 ctttttaacactctctccagcattcactattttattagatgaaatcaatgta 19639162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 440
Target Start/End: Original strand, 19837704 - 19837755
Alignment:
Q  389 cttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||| ||||||||||  | |||||||||||||||||| |||||||||||||    
T  19837704 ctttttaacactctctccagcattcactattttattagatgaaatcaatgta 19837755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 23464000 - 23463937
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||| |||||||| || |||||||  |||||||||||| |||||  ||||||||||||||    
T  23464000 tagcaacattctctttttaatactctctcaaacattcactatcttattgagtgaaatcaatgta 23463937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 28898211 - 28898148
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| |||| | |||||||| || || ||||| ||||||| |||||||||||||||    
T  28898211 tagcaacactcttttttgagcactctctctagcactcactcttttattgggtgaaatcaatgta 28898148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 45554573 - 45554636
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| ||||| |||||||||| || || ||||| ||||||| | |||||||||||||    
T  45554573 tagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgta 45554636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 37228673 - 37228613
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||| | |||||| | || || ||||| ||||||| |||||||||||||||    
T  37228673 caacactctcttttgagcactctttctagcactcacttttttattgggtgaaatcaatgta 37228613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 40971456 - 40971529
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| |||||||| | ||||| ||||||||||||| ||| |||||||||||||| ||||||    
T  40971456 tagcaacactctcttttgaacactctatctaacactcactattttattgggtaaaatcaatgtaagacctacac 40971529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 42224765 - 42224702
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| | |||||||| || || ||||| |||||||||||||||||||||||    
T  42224765 tagcaacactctcttttgagcactctctctagcactcactcttttattaggtgaaatcaatgta 42224702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 6264058 - 6263985
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||||| |||||| | || || ||||| ||||| | |||||||||||||||||||| ||||    
T  6264058 tagcaacactctcttttaagcactctatctagcactcactcttttagtgggtgaaatcaatgtaagatcaacac 6263985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 24915236 - 24915169
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||| ||||||||||||||||||| |||||||  || || ||||| ||||||| |||||||||||||||    
T  24915236 gaatactagcaacactctcttttaagcactctc--tagcactcactcttttattgggtgaaatcaatgta 24915169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 24991067 - 24991000
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||| ||||||||||||||||||| |||||||  || || ||||| ||||||| |||||||||||||||    
T  24991067 gaatactagcaacactctcttttaagcactctc--tagcactcactcttttattgggtgaaatcaatgta 24991000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 32050494 - 32050421
Alignment:
Q  367 agatgaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||  ||||||||||||||||| | || ||||| || || ||||| ||||||| |||||||||||||||    
T  32050494 agatgaatgctagcaacactctcttttgagcattctctctagcactcacttttttattgggtgaaatcaatgta 32050421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 4959284 - 4959347
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| | |||||||| ||| |  |||| ||||||| |||||||||||||||    
T  4959284 tagcaacactctcttttgagcactctctctaatacccactcttttattgggtgaaatcaatgta 4959347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 26227064 - 26227005
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatca 435  Q
    ||||||||| |||||||||| |||||||||||||| ||||| | ||||||| | ||||||    
T  26227064 ttagcaacattctcttttaagcactctctttaacaatcactctcttattagtttaaatca 26227005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 440
Target Start/End: Complemental strand, 27592622 - 27592563
Alignment:
Q  381 aacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||| |||||  |||||||||||| || ||||||||||||| | |||||||||||||    
T  27592622 aacactcgcttttgcacactctctttagcactcactattttattggatgaaatcaatgta 27592563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 30326048 - 30325985
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||| || |||||  |||||||||||| || ||||||||||||| | |||||||||||||    
T  30326048 tagcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgta 30325985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 381 - 428
Target Start/End: Complemental strand, 35013759 - 35013712
Alignment:
Q  381 aacactctcttttaaacactctctttaacattcactattttattaggt 428  Q
    |||||||| |||| ||||| |||||||||||||||| |||||||||||    
T  35013759 aacactctattttgaacacactctttaacattcactcttttattaggt 35013712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 487
Target Start/End: Original strand, 630741 - 630775
Alignment:
Q  453 atttctgtgaaatacatttagaataacttgtgcat 487  Q
    |||||||||| ||||||||||||||||||||||||    
T  630741 atttctgtgagatacatttagaataacttgtgcat 630775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 440
Target Start/End: Original strand, 1649561 - 1649619
Alignment:
Q  382 acactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| |||||||||| ||||| ||||||| ||||| | |||||| ||||||    
T  1649561 acactctcttttcaacactctctctaacactcactatcttattggatgaaattaatgta 1649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 437
Target Start/End: Complemental strand, 8912695 - 8912627
Alignment:
Q  371 gaatattagcaacactctcttttaa--acactctctttaacattcactattttattaggtgaaatcaat 437  Q
    |||| ||||||||| |||||||| |  ||||||||| || || ||||| ||||||||||||||||||||    
T  8912695 gaatgttagcaacagtctcttttgagcacactctctctatcactcactcttttattaggtgaaatcaat 8912627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 13456169 - 13456231
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||||||| |  |||||||  | || ||||| |||||||||||||||||||||||    
T  13456169 ttagcaacactctcttttgagtactctct--agcactcactcttttattaggtgaaatcaatgta 13456231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 424
Target Start/End: Complemental strand, 13975526 - 13975481
Alignment:
Q  379 gcaacactctcttttaaacactctctttaacattcactattttatt 424  Q
    |||||||||  |||| |||||||||||||||||||||| |||||||    
T  13975526 gcaacactcatttttgaacactctctttaacattcacttttttatt 13975481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 42224594 - 42224667
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| |  |||||||  | || ||||| ||||||| ||||||||||||||| || ||||||    
T  42224594 tagcaacactctcttttgagaactctctccagcactcactcttttattgggtgaaatcaatgtaggacctacac 42224667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 40971624 - 40971564
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||| | |||||||| || || ||||| |||||||  ||||||||||||||    
T  40971624 caacactctcttttgagcactctctctagcactcactcttttattgagtgaaatcaatgta 40971564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 371 - 450
Target Start/End: Complemental strand, 10061042 - 10060963
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||||||||| | |||||||| ||||| ||||| ||||||| ||||| ||||||||| || ||||||    
T  10061042 gaatattagcaacactctcttttgagcactctctctaacactcacttttttattgggtgagatcaatgtaggacctacac 10060963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 10060865 - 10060928
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| |||||||| | ||||| ||||| |||||||| ||||||||||||||    
T  10060865 tagcaacactctcttttgaacactctttataacaatcactcttttattatgtgaaatcaatgta 10060928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 35128897 - 35128834
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| |||||||||| || || ||||| ||||||| ||| |||||||||||    
T  35128897 tagcaacactctcttttgaacactctctctagcagtcactcttttattgggtaaaatcaatgta 35128834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 31116296 - 31116235
Alignment:
Q  379 gcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||| ||||| |||||||||| ||||||||||| || |||| | |||||||||||||    
T  31116296 gcaacactcacttttgaacactctctctaacattcactcttctattggatgaaatcaatgta 31116235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 435
Target Start/End: Complemental strand, 17226709 - 17226645
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatca 435  Q
    ||||| || |||||||||||| | ||||||||||||| |||||||| ||||||| | ||||||||    
T  17226709 gaatactaacaacactctcttctgaacactctctttagcattcactcttttattggatgaaatca 17226645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 34905342 - 34905405
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||  |||| |||||||||| ||||| ||||| ||||||| | |||||||||||||    
T  34905342 tagcaacactcatttttcaacactctctctaacactcactcttttattggatgaaatcaatgta 34905405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 414
Target Start/End: Complemental strand, 16436241 - 16436203
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattca 414  Q
    ||||||||||||||||||||||||||| ||||| |||||    
T  16436241 ttagcaacactctcttttaaacactctttttaatattca 16436203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 19090218 - 19090291
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| | |||||||| || || ||||| ||||||| | |||| |||||||| || ||||||    
T  19090218 tagcaacactctcttttgagcactctctctagcactcactcttttattggttgaattcaatgtaggacctacac 19090291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 19737438 - 19737511
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| |||| ||||| || || ||||| ||||||| | | ||||||||||| || ||||||    
T  19737438 tagcaacactctcttttgaacattctctctatcactcactcttttattggctcaaatcaatgtaggacctacac 19737511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 435
Target Start/End: Original strand, 12753758 - 12753822
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatca 435  Q
    ||||| ||||||||||||||||| |||||||||| ||| | || || ||||||||| | ||||||    
T  12753758 gaatactagcaacactctcttttcaacactctctctaatactcgctcttttattagtttaaatca 12753822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 412
Target Start/End: Complemental strand, 12794989 - 12794953
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacatt 412  Q
    |||||||||||||||||| |||||||||| |||||||    
T  12794989 ttagcaacactctcttttgaacactctctctaacatt 12794953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 19090386 - 19090326
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||| | |||||||| || ||  |||| ||||||| |||||||||||||||    
T  19090386 caacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgta 19090326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 21987317 - 21987361
Alignment:
Q  396 acactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  21987317 acactctctttagcactcactattttattggatgaaatcaatgta 21987361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 381 - 433
Target Start/End: Original strand, 32439486 - 32439538
Alignment:
Q  381 aacactctcttttaaacactctctttaacattcactattttattaggtgaaat 433  Q
    |||||||||||| ||||||||||| ||||| ||||| | ||||| ||||||||    
T  32439486 aacactctctttcaaacactctctctaacactcactctcttattgggtgaaat 32439538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 424
Target Start/End: Original strand, 32598951 - 32598999
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttatt 424  Q
    ||||||||| ||||||||||||| ||||||||| | ||||| |||||||    
T  32598951 ttagcaacattctcttttaaacattctctttaatactcactcttttatt 32598999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 5452234 - 5452171
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| ||||| |||||||||||||||||||||| ||||||| | |||||||||||||    
T  5452234 tagcaacactcacttttcaacactctctttaacattcactcttttattggatgaaatcaatgta 5452171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 38928012 - 38928085
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| | |||| ||| ||||| ||||| ||||||| |||||||||||||||||| ||||||    
T  38928012 tagcaacactctcttttgatcactttctctaacactcactcttttattgggtgaaatcaatgtaagacctacac 38928085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 24748913 - 24748986
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| | |||||||| ||||| ||||| ||||||| | ||||||||||||| || ||||||    
T  24748913 tagcaacactctcttttgagcactctctctaacactcactcttttattggatgaaatcaatgtaggacctacac 24748986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 50661695 - 50661635
Alignment:
Q  378 agcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatg 438  Q
    ||||||||||||||||||||||||||| ||||| | ||| ||||||||| | |||||||||    
T  50661695 agcaacactctcttttaaacactctctctaacacttactcttttattagataaaatcaatg 50661635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 395 - 438
Target Start/End: Original strand, 3313985 - 3314028
Alignment:
Q  395 aacactctctttaacattcactattttattaggtgaaatcaatg 438  Q
    ||||||||||||| |||||||||||||||||| |||||||||||    
T  3313985 aacactctctttagcattcactattttattagatgaaatcaatg 3314028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 438
Target Start/End: Original strand, 27243051 - 27243112
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatg 438  Q
    ||||||||||||||||| |||||||||| ||||| ||||| ||||||| | | |||||||||    
T  27243051 tagcaacactctcttttgaacactctctctaacactcactcttttattggataaaatcaatg 27243112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 46237221 - 46237157
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||||||| | |||||||| || || ||||| ||||||| | |||||||||||||    
T  46237221 ttagcaacactctcttttgagcactctctctagcaatcactcttttattggatgaaatcaatgta 46237157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 13809088 - 13809150
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||||||| ||||||||| |||| |||||| ||||||| | | |||||||||||    
T  13809088 tagcaacactctcttttacacactctctctaac-ttcactcttttattggataaaatcaatgta 13809150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 20493619 - 20493556
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| ||||| |||||||||| ||||| |||||  |||||| | |||||||||||||    
T  20493619 tagcaacactcacttttcaacactctctctaacactcactcatttattggatgaaatcaatgta 20493556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 28529259 - 28529322
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| ||||| |||||||||| || || ||||| ||||||| | |||||||||||||    
T  28529259 tagcaacactcacttttcaacactctctctagcactcactcttttattggatgaaatcaatgta 28529322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 39185236 - 39185306
Alignment:
Q  370 tgaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||| |||| ||||||| |||||  |||||||||||| || ||||||||||||| |  ||||||||||||    
T  39185236 tgaatgttagtaacactcacttttgcacactctctttagcactcactattttatttgaagaaatcaatgta 39185306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 45515675 - 45515606
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||| ||| |||| ||| ||||| ||||||||||  |||| ||||||||||||| | |||||||||||||    
T  45515675 gaatgttaacaacgctcactttttaacactctctccaacactcactattttattggatgaaatcaatgta 45515606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 20791321 - 20791365
Alignment:
Q  396 acactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  20791321 acactctctttagcactcactattttattggatgaaatcaatgta 20791365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 37600301 - 37600241
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||| | |||||||| || ||  |||| ||||||| |||||||||||||||    
T  37600301 caacactctcttttgagcactctctctagcacccactcttttattgggtgaaatcaatgta 37600241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 40716037 - 40715973
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| ||||| |||||||||| || || ||||| ||||||  |||||||| ||||||    
T  40716037 ttagcaacactcacttttcaacactctctctagcactcactcttttatatggtgaaattaatgta 40715973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 450
Target Start/End: Complemental strand, 1206002 - 1205931
Alignment:
Q  379 gcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    |||||||||| |||| ||||||||||||| || ||||| |||||||  ||||||||||||||||| ||||||    
T  1206002 gcaacactctattttgaacactctctttagcactcactcttttattgagtgaaatcaatgtaagacctacac 1205931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 12212128 - 12212190
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||| || ||||||||||||||    
T  12212128 tagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaatgt 12212190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 12456556 - 12456618
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    ||||||||||||||||| |||| ||||| ||||||||||| |||| || ||||||||||||||    
T  12456556 tagcaacactctcttttcaacattctctctaacattcactcttttcttgggtgaaatcaatgt 12456618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 1205833 - 1205896
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| | ||||||||||| || ||||| ||||||||||| |||| ||||||    
T  1205833 tagcaacactctcttttgagcactctctttagcactcactcttttattaggtaaaattaatgta 1205896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 371 - 440
Target Start/End: Complemental strand, 35151909 - 35151840
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||| ||||||||||| ||||| |||||||| |||| |||| ||| ||||||| | |||||||||||||    
T  35151909 gaatactagcaacactcactttttaacactctttttagcatttactcttttattggatgaaatcaatgta 35151840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 43026299 - 43026360
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||| ||||||||||||||||||  || || ||||| ||||||||||| |||||||||||    
T  43026299 tagcaacattctcttttaaacactctc--tagcactcacttttttattaggtaaaatcaatgta 43026360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 35151733 - 35151782
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattag 426  Q
    ||||||||||||||||| |||||||| ||||| ||||||| | |||||||    
T  35151733 tagcaacactctcttttgaacactctatttaatattcactttcttattag 35151782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 371 - 439
Target Start/End: Original strand, 4674911 - 4674978
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    |||| ||||||||| || |||||||  ||||||||||| | ||||| ||||||||| ||||||||||||    
T  4674911 gaatgttagcaacattcacttttaat-actctctttaaaactcactcttttattagatgaaatcaatgt 4674978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 416
Target Start/End: Complemental strand, 11574206 - 11574166
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcact 416  Q
    |||| ||||||||||||| |||||||||||||||| |||||    
T  11574206 ttaggaacactctcttttgaacactctctttaacactcact 11574166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 440
Target Start/End: Original strand, 28211889 - 28211952
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||||||| | || | | | |||||||||| |||||||| |||||||||||||||    
T  28211889 ttagcaacactctcttttgagcattatttctaacattcac-attttattgggtgaaatcaatgta 28211952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 41727439 - 41727499
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||| ||||| ||||||||||||| || ||||| |||| |||| | |||||||||||    
T  41727439 caacactcacttttgaacactctctttagcaatcactcttttgttagataaaatcaatgta 41727499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 39016669 - 39016732
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||| ||||||||||||||||||| ||||| | ||||||||||| | |||||||||||||    
T  39016669 tagcaacattctcttttaaacactctctataacacttactattttattggatgaaatcaatgta 39016732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 371 - 449
Target Start/End: Complemental strand, 51206226 - 51206148
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctaca 449  Q
    ||||| ||||||||||||||||| | |||||||| || || ||||| ||||||| ||||||||||||||| || |||||    
T  51206226 gaatactagcaacactctcttttgagcactctctctagcactcactcttttattgggtgaaatcaatgtaggacctaca 51206148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 30866935 - 30867008
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||| |||||||||||||||||||| || || ||| | ||||||||||||||| ||||||  |||||||||    
T  30866935 tagcaacgctctcttttaaacactctctctagcactcatttttttattaggtgaaaacaatgtgggatctacac 30867008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 39016841 - 39016777
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||||||| |||||||||| || || | ||| ||||||||||| |||||||||||    
T  39016841 ttagcaacactctcttttgaacactctctctagcacttactcttttattaggtaaaatcaatgta 39016777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 8108962 - 8109025
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| ||||| |||||||||| || || ||||| ||||||| |||||||||||||||    
T  8108962 tagcaacactcacttttcaacactctctctagcactcactcttttattgggtgaaatcaatgta 8109025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 39471163 - 39471226
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||| |||||||| |||||||||||||   ||| ||||||||| |||||||||||||    
T  39471163 tagcaacactcacttttaaatactctctttaacaccaactcttttattagatgaaatcaatgta 39471226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 367 - 440
Target Start/End: Complemental strand, 37315747 - 37315674
Alignment:
Q  367 agatgaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||  |||||||||||| |||| | ||||||| ||| || ||||| ||||||| |||||||||||||||    
T  37315747 agatgaatgctagcaacactcttttttgagcactctcattagcactcactcttttattgggtgaaatcaatgta 37315674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 47237912 - 47237855
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaat 437  Q
    |||||||||||||| |||||||||| || |||||||| ||||||| | ||||||||||    
T  47237912 caacactctcttttgaacactctctctagcattcactcttttattggatgaaatcaat 47237855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 33996106 - 33996046
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||| ||||| |||| ||||||||||| ||||||||  | |||||||||||    
T  33996106 caacactctcttttcaacacactctctaacattcactcttttattaaatcaaatcaatgta 33996046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 40812043 - 40812103
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaat 437  Q
    |||||||||||| |||| |||||||||| || || ||||| ||||||| ||||||||||||    
T  40812043 tagcaacactcttttttgaacactctctctagcactcactcttttattgggtgaaatcaat 40812103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 435
Target Start/End: Complemental strand, 52672007 - 52671948
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatca 435  Q
    ||||||||| | ||||||||||||||||||||| | ||||||| ||||||| | ||||||    
T  52672007 ttagcaacattatcttttaaacactctctttaatactcactatcttattagtttaaatca 52671948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 439
Target Start/End: Original strand, 6540234 - 6540291
Alignment:
Q  382 acactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    |||||||||||| |||||||| | |||||| |||| | ||||| ||||||||||||||    
T  6540234 acactctctttttaacactctttgtaacatccactctcttattgggtgaaatcaatgt 6540291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 13070117 - 13070044
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| |||| | ||| ||||| ||||| |||||||  || ||||||||||| || ||||||    
T  13070117 tagcaacactctcttttgaacattttctctaacactcactcttttattgagtaaaatcaatgtaggacctacac 13070044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 50571864 - 50571933
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||| ||||||||| || ||||| |||||||||| || || | ||| ||||||||| |||||||||||||    
T  50571864 gaatgttagcaacagtcacttttcaacactctctctagcacttactcttttattagatgaaatcaatgta 50571933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 440
Target Start/End: Complemental strand, 2088844 - 2088776
Alignment:
Q  372 aatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| |||| |  ||||||| ||||| ||||| ||| |||  ||||||||||||||    
T  2088844 aatattagcaacactcttttttgagtactctctctaacactcactctttaattgagtgaaatcaatgta 2088776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 424
Target Start/End: Original strand, 48608089 - 48608133
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttatt 424  Q
    ||||||||||||||||  ||| ||||||||||||||| |||||||    
T  48608089 caacactctcttttaagtactttctttaacattcactcttttatt 48608133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 11135745 - 11135808
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| | |||||||| || || ||||||||||||| |||||||||||||||    
T  11135745 tagcaacactctcttttgagcactctctctagcactcactattttattgggtgaaatcaatgta 11135808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 50424869 - 50424931
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    ||||||||||||||||||  |||||||| ||||||||||| ||||||| ||| ||||||||||    
T  50424869 tagcaacactctcttttaggcactctctctaacattcacttttttattgggttaaatcaatgt 50424931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 4578749 - 4578688
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| ||||||||||  |||| ||||| ||||||| |||||||||||||||    
T  4578749 tagcaacactctcttttcaacactctct--aacactcactcttttattgggtgaaatcaatgta 4578688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 13388340 - 13388403
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| || ||||||| ||||| ||||| ||||||| | |||||||||||||    
T  13388340 tagcaacactctcttttgaatactctctctaacactcacttttttattggatgaaatcaatgta 13388403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 371 - 450
Target Start/End: Original strand, 14093998 - 14094077
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    |||| |||||||||||||||||| |||||||| | ||||| ||||| ||| |||  |||||||||||||| || ||||||    
T  14093998 gaatgttagcaacactctcttttgaacactctttgtaacactcactttttgattgagtgaaatcaatgtaggacctacac 14094077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 450
Target Start/End: Complemental strand, 43832439 - 43832373
Alignment:
Q  384 actctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    |||||||||| |||||||| | || |||||||| ||||||| || |||||||||||| |||||||||    
T  43832439 actctcttttgaacactctttctagcattcactcttttattcggcgaaatcaatgtaggatctacac 43832373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 11135916 - 11135843
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| |  ||||||| || || ||||| ||||||| ||||||||||||||| || ||||||    
T  11135916 tagcaacactctcttttgaggactctctctagcactcactcttttattgggtgaaatcaatgtaggacctacac 11135843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 377 - 450
Target Start/End: Original strand, 41095612 - 41095685
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| | |||||||| || || |||||  |||||| ||||||||||||||| || ||||||    
T  41095612 tagcaacactctcttttgagcactctctctagcactcacttatttattgggtgaaatcaatgtaggacctacac 41095685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 25543346 - 25543406
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaat 437  Q
    ||||||||||| |||||||||||||||| ||||| | ||| ||||||| | ||||||||||    
T  25543346 tagcaacactcacttttaaacactctctctaacacttactcttttatttgatgaaatcaat 25543406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 28218223 - 28218159
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||  |||| ||| ||||||||| |||||||| ||||||| | |||||||||||||    
T  28218223 ttagcaacactcatttttcaaccctctctttagcattcactcttttattggatgaaatcaatgta 28218159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 440
Target Start/End: Complemental strand, 32848754 - 32848694
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||| |||||||||| || || ||||| ||||||| |||||||||| ||||    
T  32848754 caacactctcttttgaacactctctctagcactcactcttttattgggtgaaatcattgta 32848694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 19101775 - 19101712
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||| || |||||  |||||||||||| || ||||||||||||| | |||||||||||||    
T  19101775 tagcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgta 19101712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 22540374 - 22540437
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||| || |||||  |||||||||||| || ||||||||||||| | |||||||||||||    
T  22540374 tagcaacattcacttttgcacactctctttagcactcactattttattggatgaaatcaatgta 22540437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Complemental strand, 41095783 - 41095720
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| | |||||||| || || |||||  |||||| |||||||||||||||    
T  41095783 tagcaacactctcttttgagcactctctctagcactcactcatttattgggtgaaatcaatgta 41095720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 440
Target Start/End: Original strand, 41918001 - 41918064
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    ||||||||||||||||| | ||| |||| || || ||||| ||||||| |||||||||||||||    
T  41918001 tagcaacactctcttttgagcaccctctctagcactcactcttttattgggtgaaatcaatgta 41918064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 439
Target Start/End: Original strand, 13114673 - 13114735
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    |||||||||||||||||  ||||||||| ||||| ||||||| | ||| ||| ||||||||||    
T  13114673 tagcaacactctcttttggacactctctctaacactcactatctcattgggttaaatcaatgt 13114735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 29418659 - 29418585
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactatttt-attaggtgaaatcaatgtaagatctacac 450  Q
    |||||||| |||||||| | |||||||| || || ||||| |||| ||| ||||||||||||||| |||||||||    
T  29418659 tagcaacagtctcttttgatcactctctatatcactcactttttttattgggtgaaatcaatgtaggatctacac 29418585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 450
Target Start/End: Complemental strand, 11430617 - 11430545
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgtaagatctacac 450  Q
    ||||||||||||||||| | |||||||| || || ||||| ||||||| |||||| |||||||| || ||||||    
T  11430617 tagcaacactctcttttgagcactctctctagcactcactcttttatt-ggtgaattcaatgtaggacctacac 11430545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 440
Target Start/End: Original strand, 44739118 - 44739187
Alignment:
Q  371 gaatattagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||| |||||||||||||||||| |||||||||| || || ||||| |||| ||  ||||||| ||||||    
T  44739118 gaatgttagcaacactctcttttgaacactctctctagcactcactcttttcttgagtgaaattaatgta 44739187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 11430450 - 11430510
Alignment:
Q  380 caacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||||| | |||||| | || || ||||| ||||||| |||||||||||||||    
T  11430450 caacactctcttttgagcactctttctagcactcactcttttattgggtgaaatcaatgta 11430510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 13114844 - 13114784
Alignment:
Q  377 tagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaat 437  Q
    |||| ||||||||||||  ||||||||| ||||| ||||| ||||||||| | ||||||||    
T  13114844 tagcgacactctcttttggacactctctctaacactcactcttttattagataaaatcaat 13114784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 15523235 - 15523279
Alignment:
Q  396 acactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  15523235 acactctctttagcactcactattttattggatgaaatcaatgta 15523279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 15531229 - 15531273
Alignment:
Q  396 acactctctttaacattcactattttattaggtgaaatcaatgta 440  Q
    |||||||||||| || ||||||||||||| | |||||||||||||    
T  15531229 acactctctttagcactcactattttattggatgaaatcaatgta 15531273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 32211783 - 32211819
Alignment:
Q  372 aatattagcaacactctcttttaaacactctctttaa 408  Q
    |||||||||||||||||||||| |||||| |||||||    
T  32211783 aatattagcaacactctcttttcaacactttctttaa 32211819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 376 - 439
Target Start/End: Original strand, 43977373 - 43977434
Alignment:
Q  376 ttagcaacactctcttttaaacactctctttaacattcactattttattaggtgaaatcaatgt 439  Q
    |||| |||||||||||| ||||||||||  ||| ||||||| ||||||| ||||||||| ||||    
T  43977373 ttagaaacactctctttcaaacactctc--taatattcactcttttattgggtgaaatctatgt 43977434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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