View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18115_low_6 (Length: 586)

Name: NF18115_low_6
Description: NF18115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18115_low_6
NF18115_low_6
[»] chr2 (5 HSPs)
chr2 (15-455)||(8021493-8021928)
chr2 (461-586)||(8021974-8022099)
chr2 (99-132)||(22400896-22400929)
chr2 (99-132)||(22792600-22792633)
chr2 (99-132)||(22966073-22966106)
[»] scaffold0257 (1 HSPs)
scaffold0257 (43-357)||(19785-20094)
[»] chr3 (22 HSPs)
chr3 (15-283)||(17743718-17743981)
chr3 (15-283)||(19045038-19045301)
chr3 (15-244)||(28163306-28163536)
chr3 (15-283)||(28187316-28187579)
chr3 (15-234)||(11421881-11422101)
chr3 (15-180)||(28057842-28058008)
chr3 (15-180)||(28068267-28068433)
chr3 (176-244)||(28060218-28060286)
chr3 (176-244)||(28070643-28070711)
chr3 (15-124)||(28152309-28152418)
chr3 (15-65)||(27430403-27430453)
chr3 (15-64)||(27458249-27458298)
chr3 (165-224)||(26126306-26126365)
chr3 (165-224)||(26176357-26176416)
chr3 (164-219)||(28152501-28152556)
chr3 (15-89)||(26138612-26138686)
chr3 (17-131)||(27954835-27954949)
chr3 (99-132)||(27356982-27357015)
chr3 (15-88)||(27777198-27777271)
chr3 (164-225)||(28508235-28508296)
chr3 (43-123)||(8538478-8538558)
chr3 (15-123)||(28038169-28038277)
[»] scaffold0922 (1 HSPs)
scaffold0922 (18-234)||(2398-2615)
[»] scaffold1147 (1 HSPs)
scaffold1147 (81-177)||(995-1092)


Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Original strand, 8021493 - 8021928
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8021493 agttattacaagatgtacacagttttccttttgataaggaatggttggatgatatcgaaaagcgtgctttgtttcatggttcgcaagtctctcaagatgc 8021592  T
Q  115 attgcaaaaattgttggactcaaaacacat-ttgacacaacgtgt-gaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcac 212  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021593 attgcaaaaattgttggactcaaaacacatcttgacacaacgtgtggaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcac 8021692  T
Q  213 tcaacaggaggtacaaattttacgaacacgggatgaaaggcctttaagtgatcctcttggttattagactannnnnnnncgttgcattcaagttgttccc 312  Q
    ||||||||||| |||||||||||||||||||||||      ||||||||||||||||| ||||||||||||        |||||||||||| ||||||||    
T  8021693 tcaacaggaggcacaaattttacgaacacgggatg------ctttaagtgatcctcttagttattagacta-tttttttcgttgcattcaatttgttccc 8021785  T
Q  313 tgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaaacaattgacaagttatagata 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  8021786 tgcttttctttatccttcaatattttatttattgctcggacatacgttcctcattaataaattcatttagctgttcaaaacaattgacaagttataaata 8021885  T
Q  413 caaagttttagcggtaattaatctaattaagagaacctatgaa 455  Q
    ||||||||||||| |||||||||||| ||||||||||||||||    
T  8021886 caaagttttagcgataattaatctaagtaagagaacctatgaa 8021928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 461 - 586
Target Start/End: Original strand, 8021974 - 8022099
Alignment:
Q  461 gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8021974 gaaggtggcagagttcaaacctattaccacatgcttaaaagatttacaccccttaccactttgacaaaatattgttggtaacttaacctaaattttaacc 8022073  T
Q  561 tatatacaatcataaaaatatagaaa 586  Q
    ||||||||||||||||||||||||||    
T  8022074 tatatacaatcataaaaatatagaaa 8022099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 22400896 - 22400929
Alignment:
Q  99 aagtctctcaagatgcattgcaaaaattgttgga 132  Q
    |||||||||||||||||||||||||| |||||||    
T  22400896 aagtctctcaagatgcattgcaaaaactgttgga 22400929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 22792600 - 22792633
Alignment:
Q  99 aagtctctcaagatgcattgcaaaaattgttgga 132  Q
    |||||||||||||||||||||||||| |||||||    
T  22792600 aagtctctcaagatgcattgcaaaaactgttgga 22792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 22966073 - 22966106
Alignment:
Q  99 aagtctctcaagatgcattgcaaaaattgttgga 132  Q
    |||||||||||||||||||||||||| |||||||    
T  22966073 aagtctctcaagatgcattgcaaaaactgttgga 22966106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 165; Significance: 6e-88; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 43 - 357
Target Start/End: Original strand, 19785 - 20094
Alignment:
Q  43 ttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgcattgcaaaaattgttggactcaaaacac 142  Q
    |||||||||| |||||||||||||| | |||||||  |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19785 ttttgataagaaatggttggatgatgtggaaaagcgcgctttgtttcctggttcacaagtctctcaagatgcattgcaaaaattgttggactcaaaacac 19884  T
Q  143 at-ttgacacaacgtgtgaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcactcaacaggaggtacaaattttacgaacac 241  Q
    || ||||| |||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||| |    
T  19885 atcttgacgcaacatgtgaaggatcttaagcatcaattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcacaaattttacaaactc 19984  T
Q  242 gggatgaaaggcctttaagtgatcctcttggttattagactannnnnnnncgttgcattcaagttgttccctgcttttctttatccttcaatattttatt 341  Q
    ||| ||      |||||||||||||| |||||||||| ||||        |||||||||| ||  |||||||| |||||||||||||| |||||||||||    
T  19985 ggggtg------ctttaagtgatcctattggttattaaactattttttttcgttgcattctagcagttccctgattttctttatccttgaatattttatt 20078  T
Q  342 tattgctcggacatac 357  Q
    ||||||||| ||||||    
T  20079 tattgctcgaacatac 20094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 139; Significance: 2e-72; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 17743981 - 17743718
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||| | | |||||||  |||||||||| |||||  |||||||||||||||||    
T  17743981 agttattacaagatgtgcgcagatttccttttgataagaaatggttggatggtgttgaaaagcgcgctttgtttcctggtttacaagtctctcaagatgc 17743882  T
Q  115 attgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcact 213  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||| | |||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  17743881 attgcaaaaattgttggactcaaaacatattttgacacaacatgtgatggatcttaagcatcaattggattcctctgaagctgttttgcagaacatcact 17743782  T
Q  214 caacaggaggtacaaattttacgaacacgggatgaaaggcctttaagtgatcctcttggttattagacta 283  Q
    |||||||||| ||||||||||| ||| || | ||      |||||||||||||| |||| ||||||||||    
T  17743781 caacaggaggcacaaattttacaaactcgagctg------ctttaagtgatcctattggctattagacta 17743718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 19045301 - 19045038
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||||||||||||||| ||||| ||||||||||||||| |||||||||||| | | |||||||  |||||||||| |||||  |||||||||||||||||    
T  19045301 agttattacaagatgtgcgcagatttccttttgataagaaatggttggatggtgttgaaaagcgcgctttgtttcctggtttacaagtctctcaagatgc 19045202  T
Q  115 attgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcact 213  Q
    ||||||||||||||||||||||||||| | ||||||||||| ||||| | |||||||||||||||||| |||||||||||||| |||||||| |||||||    
T  19045201 attgcaaaaattgttggactcaaaacatattttgacacaacatgtgatggatcttaagcatcaattggattcctctgaagctgttttgcagaacatcact 19045102  T
Q  214 caacaggaggtacaaattttacgaacacgggatgaaaggcctttaagtgatcctcttggttattagacta 283  Q
    |||||||||| ||||||||||| ||| || | ||      |||||||||||||| |||| ||||||||||    
T  19045101 caacaggaggcacaaattttacaaactcgagctg------ctttaagtgatcctattggctattagacta 19045038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 28163306 - 28163536
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    ||||| ||||||||| |||||| ||||| ||| ||||||||||||||||||||||||||||||  |||||||| | |||||  |||||||||||||||||    
T  28163306 agttactacaagatgcacgcagatttccatttcataaggaatggttggatgatatcgaaaagcgcgctttgttgcctggtttacaagtctctcaagatgc 28163405  T
Q  115 attgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcact 213  Q
    ||||||||||||||||||||||||||||| |||||| |||| ||||  | ||||||||||||||||||||||||||||||||| |||||||| |||||||    
T  28163406 attgcaaaaattgttggactcaaaacacattttgactcaacatgtggcggatcttaagcatcaattggcttcctctgaagctgttttgcagaacatcact 28163505  T
Q  214 caacaggaggtacaaattttacgaacacggg 244  Q
    |||||||||| ||||||||||| ||| ||||    
T  28163506 caacaggaggcacaaattttacaaactcggg 28163536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 15 - 283
Target Start/End: Original strand, 28187316 - 28187579
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||||||||||||||| ||||  |||  ||||||||||||||||||||||||||| ||||| |  |||||||| | |||||  |||||||||||||||||    
T  28187316 agttattacaagatgtgcgcaaatttggttttgataaggaatggttggatgatattgaaaaacgcgctttgttgcctggtttacaagtctctcaagatgc 28187415  T
Q  115 attgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcact 213  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| || |||||||||||||||||||||||| |||||||| |||||||| |||||||    
T  28187416 attgcaaaaattgttggactcaaaacacattttgacacaacatgtggaggatcttaagcatcaattggcttcctgtgaagctgttttgcagaacatcact 28187515  T
Q  214 caacaggaggtacaaattttacgaacacgggatgaaaggcctttaagtgatcctcttggttattagacta 283  Q
    |||||||||| |||||||||||  || |||| ||      |||||||||||||| |||| ||||||||||    
T  28187516 caacaggaggcacaaattttacatactcgggctg------ctttaagtgatcctattggctattagacta 28187579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 15 - 234
Target Start/End: Original strand, 11421881 - 11422101
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    ||||| |||||||||| || || ||||||||||| || ||||||||||||| | | |||||||  |||||||||| |||||  |||||||||||||||||    
T  11421881 agttaatacaagatgtgcgtagatttccttttgacaaagaatggttggatggtgttgaaaagcgcgctttgtttcctggtttacaagtctctcaagatgc 11421980  T
Q  115 attgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcact 213  Q
    |||||||||||||||| |||||||| ||| |||||| ||||  ||| || ||||||||||||||||||||||||| ||||||| ||| ||||||||||||    
T  11421981 attgcaaaaattgttgaactcaaaatacattttgactcaacacgtggaggatcttaagcatcaattggcttcctccgaagctgttttacagagcatcact 11422080  T
Q  214 caacaggaggtacaaatttta 234  Q
    || ||||||| |||| |||||    
T  11422081 cagcaggaggcacaattttta 11422101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 28057842 - 28058008
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||||||||||||||| ||||  |||  ||||||||||||||||||||||||||| ||||| |  | |||||| | |||||  |||||||||||||||||    
T  28057842 agttattacaagatgtgcgcaaatttggttttgataaggaatggttggatgatattgaaaaacgcgttttgttgcctggtttacaagtctctcaagatgc 28057941  T
Q  115 attgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattg 180  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| || |||||||||||||||||    
T  28057942 attgcaaaaattgttggactcaaaacacattttgactcaacatgtggaggatcttaagcatcaattg 28058008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 15 - 180
Target Start/End: Original strand, 28068267 - 28068433
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||||||||||||||| ||||  |||  ||||||||||||||||||||||||||| ||||| |  | |||||| | |||||  |||||||||||||||||    
T  28068267 agttattacaagatgtgcgcaaatttggttttgataaggaatggttggatgatattgaaaaacgcgttttgttgcctggtttacaagtctctcaagatgc 28068366  T
Q  115 attgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattg 180  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| || |||||||||||||||||    
T  28068367 attgcaaaaattgttggactcaaaacacattttgactcaacatgtggaggatcttaagcatcaattg 28068433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 28060218 - 28060286
Alignment:
Q  176 aattggcttcctctgaagctgatttgcagagcatcactcaacaggaggtacaaattttacgaacacggg 244  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||| ||||    
T  28060218 aattggcttcctctgaagctgttttgcagaacatcactcaacaggaggcacaaattttacaaactcggg 28060286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 28070643 - 28070711
Alignment:
Q  176 aattggcttcctctgaagctgatttgcagagcatcactcaacaggaggtacaaattttacgaacacggg 244  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| ||| ||||    
T  28070643 aattggcttcctctgaagctgttttgcagaacatcactcaacaggaggcacaaattttacaaactcggg 28070711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 15 - 124
Target Start/End: Original strand, 28152309 - 28152418
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||||||||||||||| || || ||||| ||||||||||| |||||||||||| | |||| ||  |||||||||| || ||  ||| |||||||| ||||    
T  28152309 agttattacaagatgtgcgtagatttccgtttgataaggagtggttggatgatgttgaaatgcgcgctttgtttcctgatttacaattctctcaaaatgc 28152408  T
Q  115 attgcaaaaa 124  Q
    ||||||||||    
T  28152409 attgcaaaaa 28152418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 27430453 - 27430403
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatg 65  Q
    |||||||||||||||| || || ||||||||||||||||||||||||||||    
T  27430453 agttattacaagatgtgcgtagatttccttttgataaggaatggttggatg 27430403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 27458298 - 27458249
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggat 64  Q
    |||||||||||||||||||||| ||| ||||||||||||  |||||||||    
T  27458298 agttattacaagatgtacgcagctttgcttttgataaggcttggttggat 27458249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 26126365 - 26126306
Alignment:
Q  165 tcttaagcatcaattggcttcctctgaagctgatttgcagagcatcactcaacaggaggt 224  Q
    |||||||||||||||||| |||||| |||||| |||| |||| |||| |||||| |||||    
T  26126365 tcttaagcatcaattggcatcctctcaagctgttttggagagtatcaatcaacaagaggt 26126306  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 224
Target Start/End: Complemental strand, 26176416 - 26176357
Alignment:
Q  165 tcttaagcatcaattggcttcctctgaagctgatttgcagagcatcactcaacaggaggt 224  Q
    |||||||||||||||||| |||||| |||||| |||| |||| |||| |||||| |||||    
T  26176416 tcttaagcatcaattggcatcctctcaagctgttttggagagtatcaatcaacaagaggt 26176357  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 219
Target Start/End: Original strand, 28152501 - 28152556
Alignment:
Q  164 atcttaagcatcaattggcttcctctgaagctgatttgcagagcatcactcaacag 219  Q
    ||||||||||||||||| | |||||||||||||||||| |||  |||| |||||||    
T  28152501 atcttaagcatcaattgacatcctctgaagctgatttggagactatcattcaacag 28152556  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 26138686 - 26138612
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttc 89  Q
    ||||||||||||||| ||| || |||  |||||||||||| |||||||||| | |||||| ||  ||||||||||    
T  26138686 agttattacaagatgcacgaagctttggttttgataaggattggttggatggtgtcgaaaggcgggctttgtttc 26138612  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 27954835 - 27954949
Alignment:
Q  17 ttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgcat 116  Q
    |||||||||||||| ||||| | |  ||||||||| || |||||||||| | | |||||||  ||||||| | |||  |  ||| |||||||| ||||||    
T  27954835 ttattacaagatgtgcgcagatgtggttttgataaagattggttggatggtgttgaaaagcacgctttgtcttatgaattacaattctctcaaaatgcat 27954934  T
Q  117 tgcaaaaattgttgg 131  Q
    |||||||| ||||||    
T  27954935 tgcaaaaactgttgg 27954949  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 27356982 - 27357015
Alignment:
Q  99 aagtctctcaagatgcattgcaaaaattgttgga 132  Q
    |||||||||||||||||||||||||| |||||||    
T  27356982 aagtctctcaagatgcattgcaaaaactgttgga 27357015  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 27777198 - 27777271
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgttt 88  Q
    |||||||||||||||||||||| | |  ||||||||| || |||||||||| | | ||||| | ||||||||||    
T  27777198 agttattacaagatgtacgcagatgtggttttgataaagattggttggatggtgttgaaaaacgtgctttgttt 27777271  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 28508296 - 28508235
Alignment:
Q  164 atcttaagcatcaattggcttcctctgaagctgatttgcagagcatcactcaacaggaggta 225  Q
    |||||||||| |||||| | ||||||||||||| |||| |||| |||| |||||| ||||||    
T  28508296 atcttaagcaacaattgacatcctctgaagctgttttggagagtatcattcaacaagaggta 28508235  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 43 - 123
Target Start/End: Complemental strand, 8538558 - 8538478
Alignment:
Q  43 ttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgcattgcaaaa 123  Q
    |||||||||||| |||||||||  | | |||||||  |||||||||| || ||  ||| |||||||| |||||||||||||    
T  8538558 ttttgataaggattggttggatcgtgttgaaaagcgcgctttgtttcctgatttacaattctctcaaaatgcattgcaaaa 8538478  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 123
Target Start/End: Original strand, 28038169 - 28038277
Alignment:
Q  15 agttattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgc 114  Q
    |||| ||||||||||| ||||| | |  ||| ||||| || ||||| |||| | ||||||||| ||||||||||| || ||   || |||||||| ||||    
T  28038169 agttgttacaagatgtgcgcagatgtagtttcgataaagattggtttgatggtgtcgaaaagcgtgctttgtttcctgatttaaaattctctcaaaatgc 28038268  T
Q  115 attgcaaaa 123  Q
    |||||||||    
T  28038269 attgcaaaa 28038277  T

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Target: scaffold0922 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 2398 - 2615
Alignment:
Q  18 tattacaagatgtacgcagttttccttttgataaggaatggttggatgatatcgaaaagcttgctttgtttcatggttcgcaagtctctcaagatgcatt 117  Q
    ||||||||||| | || || |||||||||||||| ||||||||||||| | | |||||||| || ||||||| |||||  |||||||||||| ||||  |    
T  2398 tattacaagatatgcgtagatttccttttgataaagaatggttggatggtgttgaaaagctcgccttgtttcctggtttacaagtctctcaaaatgcgct 2497  T
Q  118 gcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaattggcttcctctgaagctgatttgcagagcatcactcaa 216  Q
    |||||| || |||||||||||||||| |||||| |||| |||| || ||||||| |||||||||||||||| |||||||| |||||||| ||||||||||    
T  2498 gcaaaattttttggactcaaaacacattttgactcaacatgtggaggatcttaaacatcaattggcttcctttgaagctgttttgcagaacatcactcaa 2597  T
Q  217 caggaggtacaaatttta 234  Q
    ||||||| ||| ||||||    
T  2598 caggaggcacagatttta 2615  T

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Target: scaffold1147 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold1147
Description:

Target: scaffold1147; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 995 - 1092
Alignment:
Q  81 ctttgtttcatggttcgcaagtctctcaagatgcattgcaaaaattgttggactcaaaacaca-tttgacacaacgtgtgaagtatcttaagcatcaa 177  Q
    ||||||||| | |||  |||||||||| |||| ||||||||||||||||||||| |||||||| |||||| |||| |||| || ||||||||||||||    
T  995 ctttgtttcctagtttacaagtctctctagatacattgcaaaaattgttggacttaaaacacattttgactcaacatgtggaggatcttaagcatcaa 1092  T

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