View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18116_low_1 (Length: 792)
Name: NF18116_low_1
Description: NF18116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18116_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 256 - 777
Target Start/End: Complemental strand, 3308580 - 3308059
Alignment:
| Q |
256 |
tgggttgtttccaatcaaaaacggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
355 |
Q |
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| T |
3308580 |
tgggttgtttccaatcaaaaatggagaatgaagaagccataacaagttgtaaagaccgtcattacttcatgaaacaggcggttgccgcccgtaacaactt |
3308481 |
T |
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| Q |
356 |
cgcggctgcgcattcctcctacgccgcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
455 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308480 |
cgcggctgcgcattcctcctacgcagcctcactcaagaacaccggcgcggctctcatagattttgcacaaggagaacaacaacaaaatcttttattctct |
3308381 |
T |
|
| Q |
456 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
555 |
Q |
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| T |
3308380 |
ccttcttatgatgttcctttgcctcctcctcctcttcctgatttgcctgctgctctccggcgtgctattaccatgccggagtttgaatcagacatggttg |
3308281 |
T |
|
| Q |
556 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308280 |
tggaagaggaagaggatggtgatggtgatgaagaagttgttggaagagtgaaagagagagtgaatatggatatgattcaagtgttgagtgaagttgataa |
3308181 |
T |
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| Q |
656 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
755 |
Q |
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| T |
3308180 |
tcattttataatggcttctgaagctgctcgcggtgtttctgtgattcttcaggctactcgtcttcactttcattcaaatttttctgatactgctagaggt |
3308081 |
T |
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| Q |
756 |
aaccacaaaaatccatgttcat |
777 |
Q |
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| T |
3308080 |
aaccacaaaaatccatgttcat |
3308059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 184; E-Value: 4e-99
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 3308819 - 3308616
Alignment:
| Q |
19 |
ttaacgtctacgtagttggaatccatgctttacaactttgcttttctactttgatacacctagaaagttcatattctctctccttttccaagcaataaca |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3308819 |
ttaacgtctacgtagttggaatccatgctttacaactttgcttttctactttgatacacctagaaagttcatattctctctccttttccaagcaataaca |
3308720 |
T |
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| Q |
119 |
ttctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttccacactatcacgcacgttaagcactagccttcaatattcaacaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||| ||||||| |
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| T |
3308719 |
ttctccactaatacggcatcgtttcattgccttgacactgaagctttcaacccttccacactatgacacacgttaagcactggccttctatactcaacaa |
3308620 |
T |
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| Q |
219 |
tttc |
222 |
Q |
| |
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|||| |
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| T |
3308619 |
tttc |
3308616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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