View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18116_low_2 (Length: 711)
Name: NF18116_low_2
Description: NF18116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18116_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 31 - 304
Target Start/End: Original strand, 1792051 - 1792324
Alignment:
| Q |
31 |
caattctctagggaaaaggcattaatgggcctattaaaaccctgctcaacataattctaaaattatgaaaatataatttctcaattcaccctcttatatg |
130 |
Q |
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| T |
1792051 |
caattctctaaggaaaaggcatcaatgggcctattaaaaccctgctcaacataattctaaaattataaaaatataatttctcaattcacccccttatatg |
1792150 |
T |
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| Q |
131 |
ctcataggccctcaaaatacactatcgaatggatcctttcgatattatttcggctaaaatatattattgaaaggacctttcgatagctaatggggtcgca |
230 |
Q |
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| T |
1792151 |
ctcataggcccccaaaatacactatcggaaggatcctttcgatattatttcggataaaatacattattgaaaggacctttcgatagctaatggggtcata |
1792250 |
T |
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| Q |
231 |
caggcagattgagaaattatcacaaaagaactatatgattagttttttgtattagcaaattttctagggacaaa |
304 |
Q |
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| T |
1792251 |
caggcagattgagaaattatcacaaaagaactatatgattagttttttgtattagcaaattttctagggacaaa |
1792324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 553 - 668
Target Start/End: Original strand, 1792337 - 1792452
Alignment:
| Q |
553 |
aactttttccagtcatatagtgatccatatgatcaaactgctagtgtttcattggttatgcttccattgctggcttcaagtttgatgcttgttcatttgt |
652 |
Q |
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| T |
1792337 |
aactttttccagtcatatagtgatccatatgatcaaactgctagtgtttcattggttatgcttccattgttggcttcaagtttgatgcttgttcatttgt |
1792436 |
T |
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| Q |
653 |
caaaagacaaatacat |
668 |
Q |
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| T |
1792437 |
caaaagacaaatacat |
1792452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 652 - 693
Target Start/End: Original strand, 1792452 - 1792493
Alignment:
| Q |
652 |
tcaaaagacaaatacatagatgatatcacacgtccactatct |
693 |
Q |
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| T |
1792452 |
tcaaaagacaaatacatagatgatatcacacgtccactatct |
1792493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 537 - 582
Target Start/End: Complemental strand, 43307826 - 43307781
Alignment:
| Q |
537 |
ttctggctggaaatagaactttttccagtcatatagtgatccatat |
582 |
Q |
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| T |
43307826 |
ttctggctggaaatagaactttttccagtcatgtagggatccatat |
43307781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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