View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18116_low_4 (Length: 330)
Name: NF18116_low_4
Description: NF18116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18116_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 29958817 - 29958509
Alignment:
| Q |
16 |
tcagcaaaagatgatgtcctttctggcaaaggccatgaatagtccgggctttatggctcaattttcacagcagcagaatgaaagtaatagacatgttacc |
115 |
Q |
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| T |
29958817 |
tcagcaacagatgatgtcctttctggcaaaggccatgaatagtccgggctttatggctcaattttcacagcagcagaatgaaagtaatagacatgttacc |
29958718 |
T |
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| Q |
116 |
gcaggtaaaaagaggcggctccaggggcaggaagaagatagtttagacaccaagaatccccataatcctcttgatggacgtgttgttaagtaccagcctt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29958717 |
gcaggtaaaaagaggcggctccaggggcaggaagaagatagtttagccaccaagaatccccataatcctcttgatgggcgtgttgttaagtaccagcctt |
29958618 |
T |
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| Q |
216 |
cgattaatgaggctgcaaaaacattatttaaccagatgttgcaaatgaacagttctgcaagggtggattcctccatcaagaaccttgatgcattccttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29958617 |
cgattaatgaggctgcaaaaacattatttaaccagatgttgcaaatgaacagttctgcaagggtggattcctccatcaagaaccttgatgcattccttat |
29958518 |
T |
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| Q |
316 |
tgatgatgt |
324 |
Q |
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| T |
29958517 |
tgatgatgt |
29958509 |
T |
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