View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18116_low_5 (Length: 329)
Name: NF18116_low_5
Description: NF18116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18116_low_5 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 49164951 - 49164636
Alignment:
| Q |
14 |
ctctcatcatccaagacctgaagggtgatttcgctttgctgttccttcaaatacttttgttcaaaatttaaagggacatgctggattttcattttgtaac |
113 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49164951 |
ctctcatcatccaagacctgaagggcgatttcgctttgctgttccttcaaatacttttgttcaaaatttaaagggacatgctggattttcattttgtaac |
49164852 |
T |
|
| Q |
114 |
aaagttagaaaatgtagtaactaattaagatgtagattagcttnnnnnnngatagtaaacaatcttaacataaaaaattgaggctgttcaaagactcacc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49164851 |
aaagttagaaaatgtagtaactaattaagatgtagattagcttaaaaaaagataataaacaatcttaacataaaaaattgaggctgttcaaagactcacc |
49164752 |
T |
|
| Q |
214 |
atgtattgattaacataagaatatgtcatgatagcagtgaaaaagggattgttagattcatagttttttgctttgtttaaagcttcaacaattttagcag |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49164751 |
atgtattgattaacataagaatatgtcatgatagcagtgaaaaagggattgttagattcatagttttttgctttgtttaaagcttcaacaattttagcag |
49164652 |
T |
|
| Q |
314 |
ttgaattcctctgctc |
329 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49164651 |
ttgaattcctctgctc |
49164636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 321
Target Start/End: Complemental strand, 43751245 - 43751107
Alignment:
| Q |
183 |
ataaaaaattgaggctgttcaaagactcaccatgtattgattaacataagaatatgtcatgatagcagtgaaaaagggattgttagattcatagtttttt |
282 |
Q |
| |
|
|||||||| ||| ||| || |||||||||||||||||| |||| |||| ||||||||||||| | ||||||||||||||||||||| || || |||||| |
|
|
| T |
43751245 |
ataaaaaaatgaagctattgaaagactcaccatgtatttattagcataggaatatgtcatgacaacagtgaaaaagggattgttagttttgtaatttttt |
43751146 |
T |
|
| Q |
283 |
gctttgtttaaagcttcaacaattttagcagttgaattc |
321 |
Q |
| |
|
|||||||||||||||||| ||||||| | |||||||||| |
|
|
| T |
43751145 |
gctttgtttaaagcttcagcaatttttgaagttgaattc |
43751107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University