View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18117_low_1 (Length: 760)
Name: NF18117_low_1
Description: NF18117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18117_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 262 - 743
Target Start/End: Complemental strand, 4360380 - 4359898
Alignment:
| Q |
262 |
aatgttcttaatagcacacaagatttaaaatttaaccttcgcttgagtagccatatttacgaaaacgaatcctcagcgc--agatgctcgagtaacttta |
359 |
Q |
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| T |
4360380 |
aatgttcttaatagcacacaagatttaaaatttaaccttcgcttgagtagccatatttacgaaaacgta-cctcagcgcgcagatgctcgagtaacttta |
4360282 |
T |
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| Q |
360 |
tctttgatttacaaccataactattacggtaacaacgataacacaannnnnnnnnnacaaaaatcg-atgattcacacactaagtagtaaggaatcataa |
458 |
Q |
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| T |
4360281 |
tctttgatttacaaccataactattacggtaacaacgataccacaattttttttt-acaaaaatcggatgattcacacactaagtagtaaggaatcatag |
4360183 |
T |
|
| Q |
459 |
tttcaaatctaaaaattaaattaaaattagacagatagaaaatgaactattaattagtgccatacatatcaataatgaaaacctataataatctatggcc |
558 |
Q |
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| T |
4360182 |
tttcaaatctaaaaattaaattaaaattagacagatagaaaatgaactattaattagtgccatacatatcaataatgaaaacctataataatctatggcc |
4360083 |
T |
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| Q |
559 |
acatgaaatgatatgtttcaacatgaaataaaagaataagtctgtcaaactaaacttctataaacttgaaaacaaacatattaaactacaccccaaaata |
658 |
Q |
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| T |
4360082 |
acatgaaatgatatgtttctacatgaaataaaagaataagtctgtcaaactaaacttctataaacttgaaaacaaacatattaaactacaccccaaaata |
4359983 |
T |
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| Q |
659 |
ttagacaaccctaaattcaatttgcaccatttcagcaacttgatagacaaaaacatgccatcagatcagtgacatctcatcatct |
743 |
Q |
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| T |
4359982 |
ttagacaaccctaaattcaatttgcaccatttcagcaacttgatagacaaaaacatgccatcagattagtgacatctcatcatct |
4359898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 7e-79
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 4360631 - 4360474
Alignment:
| Q |
11 |
atcatcagttaaataattgagcacgtttgctatgtcttctaacaactctattttgtttgttgtcattttcagggatagtcaaactaaattatttgttgag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4360631 |
atcatcagttaaataattgagcacgtttgctatgtcttctaacaactctattttgtttgttatcattttcagggatagtcaaactaaattatttgttgag |
4360532 |
T |
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| Q |
111 |
cacttattatgattatcgaattgtcattcatgagtttattccataactttgtttaaga |
168 |
Q |
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| T |
4360531 |
cacttattatgattatcgaattgtccttcatgagtttattccataactttgtttaaga |
4360474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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