View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18117_low_10 (Length: 237)
Name: NF18117_low_10
Description: NF18117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18117_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 14433531 - 14433757
Alignment:
| Q |
1 |
aaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaacaac |
100 |
Q |
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| T |
14433531 |
aaacatattttaatatacgagacatttttagtctgtatacgagaccattttgtttataagaaagaaagatcaccgagtaataaggagtaggagaaataac |
14433630 |
T |
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| Q |
101 |
attgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttg |
200 |
Q |
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| T |
14433631 |
attgatagggtgatcagggacatctaaaggagacaaagcgaacaaagcagcttggaagagttgagaagagccatttccaacaactatgtatttatctttg |
14433730 |
T |
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| Q |
201 |
gtcacagcatttccaactaaatgatga |
227 |
Q |
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| T |
14433731 |
gtcacagcatttccaactaaatgatga |
14433757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 217
Target Start/End: Original strand, 14443011 - 14443164
Alignment:
| Q |
64 |
gaaagatcaccgagtaataaggagtaggagaaacaacattgatagggtgatcagggacatctaaaggagacaaagcaaacaaagcagcttggaagagttg |
163 |
Q |
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||||||| |||||||||||||||| || || ||||||||||||||| ||||||| | |||| ||||||| | ||| ||||| ||| | ||| ||||| |
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| T |
14443011 |
gaaagattaccgagtaataaggagcagcagcaacaacattgataggttgatcagagggatctgaaggagagagtgcatacaaaagagcattgaaaagttg |
14443110 |
T |
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| Q |
164 |
agaagagccatttccaacaactatgtatttatctttggtcacagcatttccaac |
217 |
Q |
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| T |
14443111 |
agtagagccatttcctaacactatgaacttatcttttgtgacaacattaccaac |
14443164 |
T |
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