View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18117_low_11 (Length: 237)
Name: NF18117_low_11
Description: NF18117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18117_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14433490 - 14433270
Alignment:
| Q |
1 |
caaggaaggttaactaacaatgtgtttaattttattttgtaggaatacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatg |
100 |
Q |
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| T |
14433490 |
caaggaaggttaactaacaatgcgtttaattttattttgtaggaatacaaaaatgcaattaatatattgcattcaaggatgtttcaatggggtggtgatg |
14433391 |
T |
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| Q |
101 |
ttgctgtgtatgataaaaatgaatcttacatagaggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaa |
200 |
Q |
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| T |
14433390 |
ctgctgtgtatgataaaaatgaatcttacatagaggtggtgacttccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactctgcagctaa |
14433291 |
T |
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| Q |
201 |
agggaaattgattcatgactt |
221 |
Q |
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| T |
14433290 |
agggaaattgattcatgactt |
14433270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 14441791 - 14441631
Alignment:
| Q |
31 |
tttattttgtaggaatacaaaaatgcaattaat-atattgcattcaaggatgtttcaatggggtggtgatgttgctgtgtatgataaaaatgaatcttac |
129 |
Q |
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| T |
14441791 |
tttattttgtaggaataccaagatgtgattgatcata-tgcaatcaaggctatttcaatggggtggtgatgctgctttgtatgatgaaaacaaaccttac |
14441693 |
T |
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| Q |
130 |
atagaggtggtgacctccccaaacaaccctgatggaacccttcgtgtaccagtggtgaactc |
191 |
Q |
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| T |
14441692 |
atagaggtagtgacctccccaaacaaccctgatgggactcttcgaacaccagtggtgaactc |
14441631 |
T |
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