View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18117_low_13 (Length: 218)

Name: NF18117_low_13
Description: NF18117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18117_low_13
NF18117_low_13
[»] chr1 (14 HSPs)
chr1 (121-211)||(21190359-21190449)
chr1 (123-211)||(20709129-20709217)
chr1 (8-62)||(20709255-20709309)
chr1 (12-62)||(21190531-21190581)
chr1 (8-59)||(6832971-6833022)
chr1 (8-58)||(12709490-12709540)
chr1 (8-62)||(28453258-28453312)
chr1 (9-55)||(34391776-34391822)
chr1 (126-199)||(28453353-28453426)
chr1 (8-58)||(12709825-12709875)
chr1 (18-58)||(45473847-45473887)
chr1 (144-211)||(21190287-21190353)
chr1 (18-59)||(24721155-24721196)
chr1 (18-59)||(44891222-44891263)
[»] scaffold0217 (3 HSPs)
scaffold0217 (121-211)||(27680-27770)
scaffold0217 (9-62)||(27590-27643)
scaffold0217 (144-206)||(27776-27838)
[»] chr8 (18 HSPs)
chr8 (121-211)||(22310530-22310620)
chr8 (123-203)||(22709162-22709242)
chr8 (8-62)||(22310679-22310733)
chr8 (8-62)||(22343817-22343871)
chr8 (8-62)||(22355477-22355531)
chr8 (8-55)||(23885394-23885441)
chr8 (18-59)||(2718102-2718143)
chr8 (18-59)||(36733906-36733947)
chr8 (9-53)||(38050176-38050220)
chr8 (144-211)||(22310458-22310524)
chr8 (12-55)||(23882777-23882820)
chr8 (18-59)||(6574378-6574419)
chr8 (18-59)||(22473105-22473146)
chr8 (22-59)||(22473209-22473246)
chr8 (8-52)||(5079757-5079801)
chr8 (145-211)||(21677343-21677408)
chr8 (130-211)||(21677415-21677496)
chr8 (18-55)||(36406336-36406373)
[»] chr2 (20 HSPs)
chr2 (121-211)||(19644669-19644759)
chr2 (121-211)||(19819346-19819436)
chr2 (121-203)||(20006992-20007074)
chr2 (121-211)||(45527497-45527587)
chr2 (123-200)||(30212545-30212622)
chr2 (8-58)||(14184901-14184951)
chr2 (8-62)||(30212660-30212714)
chr2 (9-62)||(19644514-19644567)
chr2 (8-55)||(19196953-19197000)
chr2 (8-62)||(45527385-45527439)
chr2 (8-58)||(14180722-14180772)
chr2 (144-206)||(20006918-20006979)
chr2 (144-206)||(45527593-45527654)
chr2 (18-59)||(10744594-10744635)
chr2 (9-62)||(19819234-19819287)
chr2 (23-55)||(28346464-28346496)
chr2 (168-211)||(28346269-28346311)
chr2 (8-55)||(36733101-36733148)
chr2 (8-55)||(36737254-36737301)
chr2 (8-54)||(25587958-25588004)
[»] chr6 (11 HSPs)
chr6 (122-211)||(18451925-18452014)
chr6 (123-211)||(3007918-3008006)
chr6 (8-62)||(13803015-13803069)
chr6 (15-62)||(3008044-3008091)
chr6 (128-211)||(28588728-28588811)
chr6 (8-62)||(18451812-18451866)
chr6 (8-55)||(1817795-1817842)
chr6 (8-55)||(10444944-10444991)
chr6 (8-55)||(35056134-35056181)
chr6 (145-211)||(18452021-18452086)
chr6 (8-54)||(29044051-29044097)
[»] chr3 (18 HSPs)
chr3 (122-206)||(19164995-19165079)
chr3 (121-211)||(3161612-3161702)
chr3 (123-207)||(6002104-6002188)
chr3 (8-60)||(15026299-15026351)
chr3 (8-62)||(6002012-6002066)
chr3 (11-62)||(3161742-3161793)
chr3 (8-55)||(12918479-12918526)
chr3 (12-55)||(25200864-25200907)
chr3 (8-55)||(48630228-48630275)
chr3 (8-62)||(19165136-19165190)
chr3 (144-208)||(3161543-3161606)
chr3 (8-55)||(3528596-3528643)
chr3 (8-54)||(12540063-12540109)
chr3 (18-59)||(16180679-16180720)
chr3 (8-59)||(21846707-21846759)
chr3 (20-59)||(11191222-11191261)
chr3 (18-59)||(12860512-12860553)
chr3 (18-54)||(12564064-12564100)
[»] chr7 (27 HSPs)
chr7 (121-211)||(33059439-33059529)
chr7 (123-211)||(21660175-21660263)
chr7 (122-198)||(18985429-18985505)
chr7 (122-198)||(19000057-19000133)
chr7 (123-206)||(10663703-10663786)
chr7 (8-62)||(33059348-33059402)
chr7 (131-211)||(42566797-42566877)
chr7 (8-58)||(11314299-11314349)
chr7 (8-55)||(37538116-37538163)
chr7 (8-62)||(10663824-10663878)
chr7 (8-62)||(18985564-18985618)
chr7 (8-62)||(19000192-19000246)
chr7 (10-55)||(38294197-38294242)
chr7 (144-208)||(42566728-42566791)
chr7 (8-59)||(21660083-21660134)
chr7 (8-55)||(36301879-36301926)
chr7 (145-211)||(18985344-18985409)
chr7 (145-211)||(18999972-19000037)
chr7 (8-55)||(8931930-8931977)
chr7 (8-55)||(33557336-33557383)
chr7 (18-59)||(13134290-13134331)
chr7 (151-211)||(10663656-10663716)
chr7 (18-58)||(15577294-15577334)
chr7 (130-211)||(37538233-37538314)
chr7 (130-211)||(38294356-38294437)
chr7 (9-43)||(42566924-42566958)
chr7 (144-201)||(33059535-33059591)
[»] chr5 (14 HSPs)
chr5 (121-211)||(21403592-21403682)
chr5 (121-211)||(21419794-21419884)
chr5 (8-58)||(21402091-21402141)
chr5 (8-58)||(21403479-21403529)
chr5 (8-62)||(21419703-21419757)
chr5 (18-59)||(14027182-14027223)
chr5 (8-54)||(21497617-21497664)
chr5 (8-54)||(26748816-26748862)
chr5 (12-58)||(26765976-26766022)
chr5 (18-59)||(12354847-12354888)
chr5 (166-211)||(26765768-26765812)
chr5 (144-208)||(21419890-21419953)
chr5 (8-59)||(30610014-30610066)
chr5 (8-59)||(30611260-30611312)
[»] chr4 (16 HSPs)
chr4 (121-213)||(14476611-14476703)
chr4 (123-211)||(14354399-14354487)
chr4 (12-62)||(14476524-14476574)
chr4 (8-55)||(9621355-9621402)
chr4 (8-59)||(14354528-14354579)
chr4 (18-59)||(19567268-19567309)
chr4 (8-55)||(10282899-10282946)
chr4 (8-58)||(17958181-17958232)
chr4 (8-58)||(25512408-25512458)
chr4 (8-54)||(55582075-55582121)
chr4 (18-59)||(12622061-12622102)
chr4 (22-59)||(12622165-12622202)
chr4 (18-59)||(44024870-44024911)
chr4 (8-53)||(10272177-10272222)
chr4 (18-55)||(14629054-14629091)
chr4 (18-59)||(16027406-16027447)
[»] scaffold0007 (3 HSPs)
scaffold0007 (121-211)||(83089-83179)
scaffold0007 (9-62)||(83216-83269)
scaffold0007 (144-203)||(83024-83083)
[»] scaffold0125 (6 HSPs)
scaffold0125 (128-211)||(227-310)
scaffold0125 (128-211)||(29035-29118)
scaffold0125 (8-62)||(353-407)
scaffold0125 (8-58)||(24439-24489)
scaffold0125 (8-62)||(7409-7463)
scaffold0125 (33-62)||(29161-29190)
[»] scaffold0058 (2 HSPs)
scaffold0058 (121-206)||(60632-60716)
scaffold0058 (8-58)||(60801-60851)
[»] scaffold0017 (3 HSPs)
scaffold0017 (121-211)||(22638-22727)
scaffold0017 (8-62)||(22526-22580)
scaffold0017 (148-211)||(22737-22799)
[»] scaffold0394 (1 HSPs)
scaffold0394 (8-55)||(8484-8531)
[»] scaffold0213 (1 HSPs)
scaffold0213 (18-59)||(17849-17890)
[»] scaffold0148 (1 HSPs)
scaffold0148 (9-62)||(7818-7871)
[»] scaffold0379 (2 HSPs)
scaffold0379 (8-54)||(9327-9373)
scaffold0379 (8-54)||(16519-16565)
[»] scaffold0056 (1 HSPs)
scaffold0056 (8-54)||(15183-15229)
[»] scaffold0004 (3 HSPs)
scaffold0004 (8-54)||(64858-64904)
scaffold0004 (8-54)||(74308-74354)
scaffold0004 (10-54)||(67458-67502)
[»] scaffold0230 (1 HSPs)
scaffold0230 (8-52)||(8100-8144)
[»] scaffold0439 (1 HSPs)
scaffold0439 (22-60)||(3134-3172)
[»] scaffold0205 (1 HSPs)
scaffold0205 (130-211)||(6650-6731)
[»] scaffold0174 (2 HSPs)
scaffold0174 (8-54)||(3729-3775)
scaffold0174 (8-54)||(9851-9897)
[»] scaffold0165 (1 HSPs)
scaffold0165 (145-211)||(31280-31345)
[»] scaffold0035 (1 HSPs)
scaffold0035 (145-211)||(40009-40074)
[»] scaffold0063 (1 HSPs)
scaffold0063 (22-59)||(61446-61483)
[»] scaffold0005 (1 HSPs)
scaffold0005 (18-55)||(188292-188329)
[»] scaffold1256 (1 HSPs)
scaffold1256 (23-59)||(715-751)


Alignment Details
Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 21190449 - 21190359
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  21190449 tcatgcgattatgcatgtggtaccaacagagctacaactccctttgctaatgccgtaattcggctttgacaggctacaacccccttcgctt 21190359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 20709217 - 20709129
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  20709217 atgcaattatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtgattcggctttgacaggctacaacccccttcgctt 20709129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 20709309 - 20709255
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  20709309 catcattaacaatgcttcacataagtccaactacaaatcatcaattaacttcgct 20709255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 62
Target Start/End: Complemental strand, 21190581 - 21190531
Alignment:
Q  12 atcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21190581 atcaataatgcttcacataattccaactacaaatcatcaattaacttcgct 21190531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 6832971 - 6833022
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||    
T  6832971 catcatcaacaatggttcacataattccaactataaatcatcaattaacttc 6833022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 12709490 - 12709540
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    |||||||||||||||||||||||||||||| || |||||||||||||||||    
T  12709490 catcatcaacaatgcttcacataattccaattataaatcatcaattaactt 12709540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 28453258 - 28453312
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||||||||||||| |||||||||||||||||||| |||||||||    
T  28453258 catcattaacaatgcttcacataagtccaactacaaatcatcaatgaacttcgct 28453312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 34391776 - 34391822
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||    
T  34391776 atcatcaacaatgcttcacatatttccaactacaaatcatcaattaa 34391822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 126 - 199
Target Start/End: Original strand, 28453353 - 28453426
Alignment:
Q  126 cgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaa 199  Q
    |||||||||| ||||| ||||||||||||||||||| || | ||||| ||| ||||| ||||||||||||||||    
T  28453353 cgattatgcacgtggtaccaacagagctacaactcctttcgttaatgccgtgattcgactttgacaggctacaa 28453426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 12709825 - 12709875
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    |||||||||||||| ||||||||||||||| || |||||||||||||||||    
T  12709825 catcatcaacaatgtttcacataattccaattataaatcatcaattaactt 12709875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 45473847 - 45473887
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  45473847 aatgcttcacataattccaactataaatcatcaattaactt 45473887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 21190353 - 21190287
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||| || ||| ||||||| ||||||||||||| ||||||| ||||    
T  21190353 caacagagctacaactcccttcgctagtgccgtgattcggc-ttgacaggctacatcccccttcgctt 21190287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 24721196 - 24721155
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  24721196 aatgcttcacataattctaactataaatcatcaattaacttc 24721155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 44891222 - 44891263
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  44891222 aatgcttcacataattccaactatacatcatcaattaacttc 44891263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 27680 - 27770
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||| ||||    
T  27680 tcatgcgattatgcatgtggtaccaacagagctacaactccctttactaatgccgtaattaggctttgacaggctacaacccccttcgctt 27770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 27590 - 27643
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  27590 atcatcaacaatgcttcacataattccaacaacaaataatcaattaacttcgct 27643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 27776 - 27838
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctt 206  Q
    ||||||||||||| |||| || |||| || ||||||| |||||||||||| |||| |||||||    
T  27776 caacagagctacatctcctttcgctattgccgtaattaggctttgacaggttacatccccctt 27838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 22310620 - 22310530
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||  |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  22310620 tcatgcgattatgcatgtggcaccaacagagctacaactcccttcgctaatgccgtaattcggctttgacaggctacaacccccttcgctt 22310530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 123 - 203
Target Start/End: Complemental strand, 22709242 - 22709162
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaacccc 203  Q
    |||| |||||||||||||| ||||||||| |||| ||||||| ||||||||||| |||||||||||||| |||||||||||    
T  22709242 atgcaattatgcatgtggtaccaacagagatacagctcccttcgctaatgtcgtgattcggctttgacatgctacaacccc 22709162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 22310733 - 22310679
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22310733 catcatcaacaatgcttcacataattccaaatacaaatcatcaattaacttcgct 22310679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 22343817 - 22343871
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  22343817 catcatcaacaatgcttcacataattccaactataaatcatccattaacttcgct 22343871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 22355477 - 22355531
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  22355477 catcatcaacaatgcttcacataattccaactataaatcatccattaacttcgct 22355531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 23885394 - 23885441
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| |||||||||||||| |||||||||||||||||||    
T  23885394 catcatcaacaatacttcacataattcccactacaaatcatcaattaa 23885441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 2718143 - 2718102
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  2718143 aatgcttcacataattccaactataaatcatcaattaacttc 2718102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 36733947 - 36733906
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  36733947 aatgcttcacataattccaactataaatcatcaattaacttc 36733906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 53
Target Start/End: Original strand, 38050176 - 38050220
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaaatcatcaatt 53  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||    
T  38050176 atcatcatcaatgcttcacataattccaactacaaataatcaatt 38050220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 22310524 - 22310458
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||||||||||||  ||| || ||| ||||||| ||||||||||||||||||||| ||||    
T  22310524 caacagagctacaactcccttcactattgccgtgattcggc-ttgacaggctacaacccccttcgctt 22310458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 23882777 - 23882820
Alignment:
Q  12 atcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||| |||||||||||||| |||||||||||||||||||    
T  23882777 atcaacaatacttcacataattcccactacaaatcatcaattaa 23882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 6574419 - 6574378
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  6574419 aatgcttcacataattccaactatacatcatcaattaacttc 6574378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 22473105 - 22473146
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  22473105 aatgtttcacataattccaactataaatcatcaattaacttc 22473146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 22473209 - 22473246
Alignment:
Q  22 cttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  22473209 cttcacataattccaactataaatcatcaattaacttc 22473246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 5079757 - 5079801
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaat 52  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||    
T  5079757 catcatcaacaatagttcacataattccaactacaattcatcaat 5079801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 21677408 - 21677343
Alignment:
Q  145 aacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||| ||||||| ||||||||| ||||||| |  || ||||||||||||||||| ||||    
T  21677408 aacagagctacagctcccttcgctaatgtcataattcgac-atgtcaggctacaacccccttcgctt 21677343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 21677496 - 21677415
Alignment:
Q  130 tatgcatgtggtgccaacagagc-tacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||| ||| |||||| || | ||| ||| ||||||||||||||||| ||| ||||||||||| ||||||| ||||    
T  21677496 tatgcatgtggtaccatcagagcataaatctctcttcgctaatgtcgtaattcgactt-gacaggctacagcccccttcgctt 21677415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 36406373 - 36406336
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  36406373 aatgcttcacataattccatctataaatcatcaattaa 36406336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 19644669 - 19644759
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  19644669 tcatgcgattatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtaattaggctttgacaggctacaacccccttcgctt 19644759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 19819346 - 19819436
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||| ||||||    
T  19819346 tcatgcaattatgcatgtggtaccaacagagctacaactcccttcactaatgtcgtaattcagctttgacaggctacaacccccattgctt 19819436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 121 - 203
Target Start/End: Complemental strand, 20007074 - 20006992
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaacccc 203  Q
    ||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||    
T  20007074 tcatgcgattacgcatgtggtaccaacagagctacaactcccttcgctaatgccgtaattcggctttgacaagctacaacccc 20006992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 45527497 - 45527587
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  45527497 tcatgcgattatgaatgtggtaccaacagagctacagctcccttagttaatgccgtaattcggctttgacaggctacaaccctcttcgctt 45527587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 30212622 - 30212545
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaac 200  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||||| | | |||||||||||||||||||||||    
T  30212622 atgcaattatgcatgtggtaccaacagagctacaactcccttcgctaatgccatgattcggctttgacaggctacaac 30212545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 14184951 - 14184901
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14184951 catcatcaacaatgcttcacataattccaactataaatcatcaattaactt 14184901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 30212714 - 30212660
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  30212714 catcattaacaatgcttcacataagtccaactacaaatcatcaattaacttcgct 30212660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 19644514 - 19644567
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  19644514 atcatcaacaatgcttcacataatttcaactacaaataatcaattaacttcgct 19644567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 19197000 - 19196953
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  19197000 catcatcaacaatacttcacataattccaactacaaatcatcaattaa 19196953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 45527385 - 45527439
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  45527385 catcattaacaatgcttcacataagtccaactacaaatcatcaactaacttcgct 45527439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 14180772 - 14180722
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||||||||    
T  14180772 catcatcaacaatgcttcacatgatttcaactataaatcatcaattaactt 14180722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 20006979 - 20006918
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctt 206  Q
    ||||||||||| |||||||||||||| || ||| ||||||| |||||||||||||||||||||    
T  20006979 caacagagctataactccctttgctattgccgtgattcggc-ttgacaggctacaaccccctt 20006918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 45527593 - 45527654
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctt 206  Q
    ||||||||||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||    
T  45527593 caacagagctacagctcccttcgctgatgtcgtgattcggc-ttgacaggctacaaccccctt 45527654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 10744635 - 10744594
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  10744635 aatgcttcacataattccaactatacatcatcaattaacttc 10744594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 19819234 - 19819287
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||| |||||||||||| |||| | |||||||||||| |||||||||||||||    
T  19819234 atcattaacaatgcttcatataagttcaactacaaatcttcaattaacttcgct 19819287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 55
Target Start/End: Complemental strand, 28346496 - 28346464
Alignment:
Q  23 ttcacataattccaactacaaatcatcaattaa 55  Q
    |||||||||||||||||||||||||||||||||    
T  28346496 ttcacataattccaactacaaatcatcaattaa 28346464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 28346311 - 28346269
Alignment:
Q  168 taatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||||||  |||||||||||||||||||||||||||    
T  28346311 taatgtcgtaattcga-tttgacaggctacaaccccctttgctt 28346269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 36733148 - 36733101
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    |||||||||||||  ||||||||||||||||||||| | |||||||||    
T  36733148 catcatcaacaatagttcacataattccaactacaatttatcaattaa 36733101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 36737301 - 36737254
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    |||||||||||||  ||||||||||||||||||||| | |||||||||    
T  36737301 catcatcaacaatagttcacataattccaactacaatttatcaattaa 36737254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 25588004 - 25587958
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  |||||||||||||||| |||| ||||||||||    
T  25588004 catcatcaacaatagttcacataattccaaccacaattcatcaatta 25587958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 122 - 211
Target Start/End: Original strand, 18451925 - 18452014
Alignment:
Q  122 catgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||    
T  18451925 catgcgataatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtaattcggctttgacaggctacaacccccttcgctt 18452014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 3008006 - 3007918
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||  || ||||||||||||||||||||||||||||| ||||    
T  3008006 atgcaattatgcatgtggtaccaacagagctacaactcccttcgctaatgcagtgattcggctttgacaggctacaacccccttcgctt 3007918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 13803069 - 13803015
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13803069 catcatcaacaatgcttcacataagtccaactacaaatcatcaattaacttcgct 13803015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 3008091 - 3008044
Alignment:
Q  15 aacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3008091 aacaatgcttcacataagtccaactacaaatcatcaattaacttcgct 3008044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 128 - 211
Target Start/End: Original strand, 28588728 - 28588811
Alignment:
Q  128 attatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||| |||| ||||| || ||||||||||||| ||||||| |||||||| | |||||||||||||| ||||||| ||||    
T  28588728 attatgcatatggtaccaactgaactacaactcccttcgctaatgccgtaattcagatttgacaggctacatcccccttcgctt 28588811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 18451812 - 18451866
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  18451812 catcattaacaatgtttcacataagtccaactacaaatcatcaattaacttcgct 18451866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 1817795 - 1817842
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  1817795 catcatcaaaaatacttcacataattccaactacaaatcatcaattaa 1817842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 10444944 - 10444991
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  10444944 catcatcaacaatacttcacataatttcaactacaaatcatcaattaa 10444991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 35056134 - 35056181
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  35056134 catcatcaacaatacttcacataatttcaactacaaatcatcaattaa 35056181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 18452021 - 18452086
Alignment:
Q  145 aacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||| |||||||  |||||||||||||||||| ||||||||||||| ||||||| ||||    
T  18452021 aacagagctacacctcccttcactaatgtcgtaattcggc-ttgacaggctacatcccccttcgctt 18452086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 29044051 - 29044097
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  29044051 catcatcaacaatagttcacataattccaactacaattcatcaatta 29044097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 19165079 - 19164995
Alignment:
Q  122 catgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctt 206  Q
    |||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  19165079 catgcgattatgcatgtggtaccaacagagctataactcccttcgctaatgtcgtaattcggctttgataggctacaaccccctt 19164995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 3161702 - 3161612
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  3161702 tcatgcgattatgcatgtggtaccaacagagctacaactctcttcgctaatgccgtaattcggctttgacaggctacagcccccttcgctt 3161612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 207
Target Start/End: Original strand, 6002104 - 6002188
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaacccccttt 207  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||| |||||||||||||||||    
T  6002104 atgcaattatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtgattcggctttgataggctacaacccccttt 6002188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 8 - 60
Target Start/End: Complemental strand, 15026351 - 15026299
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcg 60  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  15026351 catcatcaacaatgcttcacataattccaactataaatcatcaattaacttcg 15026299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 6002012 - 6002066
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6002012 catcattaacaatgcttcacataagtccaactacaaatcatcaattaacttcgct 6002066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 62
Target Start/End: Complemental strand, 3161793 - 3161742
Alignment:
Q  11 catcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  3161793 catcaataatgcttctcataattccaactacaaatcatcaattaacttcgct 3161742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 12918526 - 12918479
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12918526 catcatcaacaatacttcacataattccaactacaaatcatcaattaa 12918479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 25200864 - 25200907
Alignment:
Q  12 atcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  25200864 atcaacaatgcttcacataattccaactacaaatcatcaattaa 25200907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 48630228 - 48630275
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  48630228 catcatcaacaatgcttcacataatttcaactacaaatcatcaattaa 48630275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 19165190 - 19165136
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  19165190 catcattaacaatgcttcacataagtccaattacaaatcatcaattaacttcgct 19165136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 3161606 - 3161543
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttg 208  Q
    ||||||||||||| ||||||| |||| |||||| ||||||| |||||||||||||||||||||||    
T  3161606 caacagagctacagctcccttcgctattgtcgtgattcggc-ttgacaggctacaaccccctttg 3161543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 3528643 - 3528596
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  3528643 catcaacaacaatacttcacataattccaactacaaatcatcaattaa 3528596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 12540063 - 12540109
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  12540063 catcatcaacaatagttcacataattccaactacaattcatcaatta 12540109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 16180720 - 16180679
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  16180720 aatgcttcacataattccaactatacatcatcaattaacttc 16180679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 21846759 - 21846707
Alignment:
Q  8 catcatcaacaatgcttcacataattccaa-ctacaaatcatcaattaacttc 59  Q
    |||||||||||||||||||||||||||||| | |||| |||||||||| ||||    
T  21846759 catcatcaacaatgcttcacataattccaatcaacaattcatcaattatcttc 21846707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 11191222 - 11191261
Alignment:
Q  20 tgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||| | ||||||||||||||||    
T  11191222 tgcttcacataattccaactatacatcatcaattaacttc 11191261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 12860553 - 12860512
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    |||||||||||||||| |||||| ||||||||||| ||||||    
T  12860553 aatgcttcacataatttcaactataaatcatcaatcaacttc 12860512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 12564064 - 12564100
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaatta 54  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  12564064 aatgcttcacataattccaactataaatcattaatta 12564100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 6e-30; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 33059439 - 33059529
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||||| ||||    
T  33059439 tcatgcgattatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtaattcggctttgacaggctacagtccccttcgctt 33059529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 211
Target Start/End: Original strand, 21660175 - 21660263
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||| |||||||||||||| |||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||    
T  21660175 atgcaattatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtgattcggctttgacaggctacaacctcctttgctt 21660263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 18985505 - 18985429
Alignment:
Q  122 catgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctaca 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||| |||||||    
T  18985505 catgcgattatgcatgtggtaccaacagagctacaactccctttgctaatgctggaattcggctttgacgggctaca 18985429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 19000133 - 19000057
Alignment:
Q  122 catgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctaca 198  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||  | |||||||||||||| |||||||    
T  19000133 catgcgattatgcatgtggtaccaacagagctacaactccctttgctaatgctggaattcggctttgacgggctaca 19000057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 123 - 206
Target Start/End: Complemental strand, 10663786 - 10663703
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctt 206  Q
    |||| |||||||||||||| | |||||||||||||||||||| ||||||| |||  ||||||||||||||||||||||||||||    
T  10663786 atgcaattatgcatgtggtacaaacagagctacaactcccttcgctaatgccgtggttcggctttgacaggctacaaccccctt 10663703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 33059348 - 33059402
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33059348 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 33059402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 131 - 211
Target Start/End: Complemental strand, 42566877 - 42566797
Alignment:
Q  131 atgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||| |||||||||||||||||||||| ||||||| || ||||  |||||| |||||||||||| |||||||||    
T  42566877 atgcatgtggtaccaacagagctacaactcccttcgctaatgccgcaattatgctttggcaggctacaacctcctttgctt 42566797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 11314349 - 11314299
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  11314349 catcatcaacaatgcttcacataattccaactataaatcatcaattaactt 11314299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 37538116 - 37538163
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37538116 catcatcaacaatacttcacataattccaactacaaatcatcaattaa 37538163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 10663878 - 10663824
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| || |||||||||||||| ||||||||||||||||||||||||||||||    
T  10663878 catcattaaaaatgcttcacataagtccaactacaaatcatcaattaacttcgct 10663824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 18985618 - 18985564
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  18985618 catcattaacaatgattcacataagtccaactacaaatcatcaattaacttcgct 18985564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 19000246 - 19000192
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  19000246 catcattaacaatgattcacataagtccaactacaaatcatcaattaacttcgct 19000192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 38294197 - 38294242
Alignment:
Q  10 tcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||    
T  38294197 tcatcaacaatacttcacataattccaactacaaatcatcaattaa 38294242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 42566791 - 42566728
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttg 208  Q
    ||||||||||||| ||||||| |||| |||||| ||||||| |||||||||||||||||||||||    
T  42566791 caacagagctacagctcccttcgctattgtcgtgattcggc-ttgacaggctacaaccccctttg 42566728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 21660083 - 21660134
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    |||||| ||||||||||||||||| || ||||||||||||||||||||||||    
T  21660083 catcattaacaatgcttcacataagtcgaactacaaatcatcaattaacttc 21660134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 36301926 - 36301879
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  36301926 catcatcaacaatacttcacataattctaactacaaatcatcaattaa 36301879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 18985409 - 18985344
Alignment:
Q  145 aacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||| |||||||||||| |||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  18985409 aacagagttacaactcccttcgctattgtcgtgattcggc-ttgacaggctacaacccccttcgctt 18985344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 19000037 - 18999972
Alignment:
Q  145 aacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||| |||||||||||| |||| |||||| ||||||| ||||||||||||||||||||| ||||    
T  19000037 aacagagttacaactcccttcgctattgtcgtgattcggc-ttgacaggctacaacccccttcgctt 18999972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 8931977 - 8931930
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||    
T  8931977 catcattaagaatacttcacataattccaactacaaatcatcaattaa 8931930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 33557383 - 33557336
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    |||||||| ||||||||||||||||||||| ||| |||||||||||||    
T  33557383 catcatcagcaatgcttcacataattccaaataccaatcatcaattaa 33557336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 13134331 - 13134290
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  13134331 aatgcttcacataattccaactatacatcatcaattaacttc 13134290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 10663716 - 10663656
Alignment:
Q  151 gctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||| ||||| ||||||||||| ||||||||||||| | |||||||| |||| ||||    
T  10663716 gctacaacccccttcgctaatgtcgtgattcggctttgactgactacaacctccttcgctt 10663656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 15577334 - 15577294
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  15577334 aatgcttcacataatttcaactataaatcatcaattaactt 15577294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 37538233 - 37538314
Alignment:
Q  130 tatgcatgtggtgccaacagagctacaa-ctccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||| ||| ||||||  ||| ||| ||| | ||||||||||||| | ||| ||||||||||||||||||||||||    
T  37538233 tatgcatgtggtaccatcagagcatcaagctctcttcgttaatgtcgtaatttgactt-gacaggctacaaccccctttgctt 37538314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Original strand, 38294356 - 38294437
Alignment:
Q  130 tatgcatgtggtgccaacagagctacaa-ctccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||| ||| ||||||  ||| ||| ||| | ||||||||||||||| ||| ||||||||||||||||||| ||||    
T  38294356 tatgcatgtggtaccatcagagcatcaagctctcttcgttaatgtcgtaattcgactt-gacaggctacaacccccttcgctt 38294437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 42566958 - 42566924
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaa 43  Q
    |||| ||||||||||||||||||||||||||||||    
T  42566958 atcaacaacaatgcttcacataattccaactacaa 42566924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 201
Target Start/End: Original strand, 33059535 - 33059591
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaacc 201  Q
    ||||||||||||||||| ||| |||| || ||| ||||||| ||||||||||||||||    
T  33059535 caacagagctacaactctcttagctattgccgtgattcggc-ttgacaggctacaacc 33059591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 21403592 - 21403682
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  21403592 tcatgcgattatgcatgtggtaccaacaaagttacgactcccttcgctaatgtcgtaattcggctttgacaggctacaacccccttcgctt 21403682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 21419794 - 21419884
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||| | ||||||||  ||||||||||||||||||||||| ||||    
T  21419794 tcatgcgattatgcatgtggtaccaacagagctacaactcccttcgctaacgccgtaattcatctttgacaggctacaacccccttcgctt 21419884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 21402141 - 21402091
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    ||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  21402141 catcatcaacaatgcttcacataattccaactataaatcatcatttaactt 21402091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 21403479 - 21403529
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  21403479 catcattaacaatgcgtcacataattccaactacaaatcatcaattaactt 21403529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 21419703 - 21419757
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||||| |||||    
T  21419703 catcattaacaatgcgtcacataattccaactacaaatcatcaattaacatcgct 21419757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 14027223 - 14027182
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  14027223 aatgcttcacataattccaactataaatcatcaattaacttc 14027182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 21497617 - 21497664
Alignment:
Q  8 catcatcaacaatgcttcac-ataattccaactacaaatcatcaatta 54  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||    
T  21497617 catcatcaacaatgcttcacaataattccaacaacaattcatcaatta 21497664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 26748816 - 26748862
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  |||||||| |||||||||||| ||||||||||    
T  26748816 catcatcaacaatagttcacatatttccaactacaattcatcaatta 26748862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 26766022 - 26765976
Alignment:
Q  12 atcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    |||| ||||||||||||||||| |||||| |||| ||||||||||||    
T  26766022 atcagcaatgcttcacataatttcaactataaattatcaattaactt 26765976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 12354847 - 12354888
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    |||| |||||||||||||||||| ||||||||||| ||||||    
T  12354847 aatgtttcacataattccaactataaatcatcaatcaacttc 12354888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 166 - 211
Target Start/End: Complemental strand, 26765812 - 26765768
Alignment:
Q  166 gctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  26765812 gctaatgtcgtaattcgactt-gacaggctacaacccccttcgctt 26765768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 21419890 - 21419953
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttg 208  Q
    |||||||||||||||  |||| |||| || ||| ||||||| |||||| ||||||||||||||||    
T  21419890 caacagagctacaacaaccttcgctattgccgtgattcggc-ttgacaagctacaaccccctttg 21419953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 30610014 - 30610066
Alignment:
Q  8 catcatcaacaatgcttcacataattccaa-ctacaaatcatcaattaacttc 59  Q
    |||| ||||||||||||||||||||||||| | |||| |||||||||| ||||    
T  30610014 catcttcaacaatgcttcacataattccaatcaacaattcatcaattatcttc 30610066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 30611260 - 30611312
Alignment:
Q  8 catcatcaacaatgcttcacataattccaa-ctacaaatcatcaattaacttc 59  Q
    ||||||||||||||||| |||||||||||| | |||| |||||||||| ||||    
T  30611260 catcatcaacaatgcttaacataattccaatcaacaattcatcaattatcttc 30611312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 14476611 - 14476703
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgcttct 213  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||| ||||||||||| |||| ||||||| ||||||    
T  14476611 tcatgcgattatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtaattcagctttgacaggatacatcccccttcgcttct 14476703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 14354487 - 14354399
Alignment:
Q  123 atgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||| ||||||||| |||| |||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  14354487 atgcaattatgcatatggtaccaacagagctacaactcccttcgctaatgccgtgattcggctttgacaggctacaacccccttcgctt 14354399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 12 - 62
Target Start/End: Original strand, 14476524 - 14476574
Alignment:
Q  12 atcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14476524 atcaacaatgcgtcacataattccaactacaaatcatcaattaacttcgct 14476574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 9621355 - 9621402
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9621355 catcatcaacaatacttcacataattccaactacaaatcatcaattaa 9621402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 14354579 - 14354528
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    |||||| ||||||||||||||||| ||||||||||||| |||||||||||||    
T  14354579 catcattaacaatgcttcacataagtccaactacaaataatcaattaacttc 14354528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 19567309 - 19567268
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  19567309 aatgcttcacataattccaactataaatcatcaattaacttc 19567268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 10282899 - 10282946
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    |||||||| |||| ||||||||||||| ||||||||||||||||||||    
T  10282899 catcatcagcaatacttcacataattcaaactacaaatcatcaattaa 10282946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 17958181 - 17958232
Alignment:
Q  8 catcatcaacaatgcttcacataa-ttccaactacaaatcatcaattaactt 58  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||||||||||    
T  17958181 catcaacaacaatgcttcacataaattccaactataaatcatcaattaactt 17958232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 25512408 - 25512458
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    |||||| ||||||| ||| |||||||||||||| |||||||||||||||||    
T  25512408 catcattaacaatggttctcataattccaactataaatcatcaattaactt 25512458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 55582075 - 55582121
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  55582075 catcatcaacaatagttcacataattccaactacaattcatcaatta 55582121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 12622061 - 12622102
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||| ||||||||||||||| ||||||||||||||||||    
T  12622061 aatgctttacataattccaactataaatcatcaattaacttc 12622102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 12622165 - 12622202
Alignment:
Q  22 cttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  12622165 cttcacataattccaactataaatcatcaattaacttc 12622202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 44024911 - 44024870
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  44024911 aatgcttcacataattccaactatacatcatcaattaacttc 44024870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 10272177 - 10272222
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatt 53  Q
    |||||| | |||| ||||||||||||| ||||||||||||||||||    
T  10272177 catcatgagcaatacttcacataattcaaactacaaatcatcaatt 10272222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 14629054 - 14629091
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  14629054 aatgcttcacataattccaactatacatcatcaattaa 14629091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 16027447 - 16027406
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| |||||||||  |||||||    
T  16027447 aatgcttcacataattccaactataaatcatcagctaacttc 16027406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 63; Significance: 1e-27; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 121 - 211
Target Start/End: Complemental strand, 83179 - 83089
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||| ||||||||||||||| |||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||| ||||||| ||||    
T  83179 tcatgtgattatgcatgtggtaccaacagagctacaactcccttcgctaatgccgtaattaggctttgacaggctacatcccccttcgctt 83089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 83269 - 83216
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  83269 atcatcaacaatgcttcacataattccaactacaaataatcaattaacttcgct 83216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 83083 - 83024
Alignment:
Q  144 caacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaacccc 203  Q
    ||||||||||||| |||||||  ||| ||  |||||| ||||||||||||||||||||||    
T  83083 caacagagctacatctcccttcactattgctgtaattaggctttgacaggctacaacccc 83024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 60; Significance: 9e-26; HSPs: 6)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 310 - 227
Alignment:
Q  128 attatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||    
T  310 attatgcatgtggtaccaacagagctacagctcccttcgctaatgtcgtgattcgactttgacaggctacaacccccttcgctt 227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 128 - 211
Target Start/End: Complemental strand, 29118 - 29035
Alignment:
Q  128 attatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||||| |||||||||||||| ||||||| ||||||  ||| ||||||| ||||||||||||||||||||| ||||    
T  29118 attatgcatgtggtaccaacagagctacagctcccttcgctaataccgtgattcggcgttgacaggctacaacccccttcgctt 29035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 407 - 353
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  407 catcattaacaatgcttcacataagtccaactacaaatcatcaattaacttcgct 353  T

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Target: scaffold0125; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24439 - 24489
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24439 catcatcaacaatgcttcacataattccaactataaatcatcaattaactt 24489  T

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Target: scaffold0125; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Complemental strand, 7463 - 7409
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| |||||||||||||||||   ||||||||||||||||||||||||||||    
T  7463 catcattaacaatgcttcacataagaacaactacaaatcatcaattaacttcgct 7409  T

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Target: scaffold0125; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 29190 - 29161
Alignment:
Q  33 tccaactacaaatcatcaattaacttcgct 62  Q
    ||||||||||||||||||||||||||||||    
T  29190 tccaactacaaatcatcaattaacttcgct 29161  T

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Target: scaffold0058 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 60716 - 60632
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctt 206  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||    
T  60716 tcatgtgattatgcatgtggtaccaatagagcttcaactcccttcgctaatgtcgtaattcgactttgaca-gctacaaccccctt 60632  T

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Target: scaffold0058; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 60851 - 60801
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaactt 58  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  60851 catcatcaataatgcttcacataattccaactacaaatcatcaattaactt 60801  T

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Target: scaffold0017 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 121 - 211
Target Start/End: Original strand, 22638 - 22727
Alignment:
Q  121 tcatgcgattatgcatgtggtgccaacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||||||| |||||||||||||| |||| || ||||||||||| ||||||| |||| ||| |||||||||||| ||||    
T  22638 tcatgcgattatgcatgtggtaccaacagagctacagctcctttcgctaatgtcgtgattcggc-ttgaaaggttacaacccccttcgctt 22727  T

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Target: scaffold0017; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 62
Target Start/End: Original strand, 22526 - 22580
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  22526 catcattaacaatgtttcacataagtccaactacaaatcatcaactaacttcgct 22580  T

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Target: scaffold0017; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 22737 - 22799
Alignment:
Q  148 agagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    ||||||||||||||||| ||||||| ||| ||||||| ||| ||||||||| ||||||| ||||    
T  22737 agagctacaactcccttcgctaatgccgtgattcggc-ttggcaggctacagcccccttcgctt 22799  T

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Target: scaffold0394 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 8531 - 8484
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8531 catcatcaacaatgcttcacataattccaactacaaatcatcaattaa 8484  T

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Target: scaffold0213 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 17849 - 17890
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  17849 aatgcttcacataattccaactataaatcatcaattaacttc 17890  T

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Target: scaffold0148 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 7818 - 7871
Alignment:
Q  9 atcatcaacaatgcttcacataattccaactacaaatcatcaattaacttcgct 62  Q
    |||||||||||||||||| ||||||||||||| |||||||||  ||||||||||    
T  7818 atcatcaacaatgcttcatataattccaactataaatcatcagctaacttcgct 7871  T

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Target: scaffold0379 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: scaffold0379
Description:

Target: scaffold0379; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 9327 - 9373
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  9327 catcatcaacaatagttcacataattccaactacaattcatcaatta 9373  T

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Target: scaffold0379; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 16519 - 16565
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  16519 catcatcaacaatagttcacataattccaactacaattcatcaatta 16565  T

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Target: scaffold0056 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 15183 - 15229
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  15183 catcatcaacaatagttcacataattccaactacaattcatcaatta 15229  T

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Target: scaffold0004 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 64858 - 64904
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  64858 catcatcaacaatagttcacataattccaactacaattcatcaatta 64904  T

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Target: scaffold0004; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 74308 - 74354
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||    
T  74308 catcatcaacaatagttcacataattccaactacaattcatcaatta 74354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 67502 - 67458
Alignment:
Q  10 tcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||    
T  67502 tcatcaacaatagttcacataattccaactacaattcatcaatta 67458  T

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Target: scaffold0230 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 8144 - 8100
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaat 52  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||    
T  8144 catcatcaacaatagttcacataattccaactacaattcatcaat 8100  T

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Target: scaffold0439 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0439
Description:

Target: scaffold0439; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 3134 - 3172
Alignment:
Q  22 cttcacataattccaactacaaatcatcaattaacttcg 60  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  3134 cttcacataattccaactatacatcatcaattaacttcg 3172  T

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Target: scaffold0205 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 211
Target Start/End: Complemental strand, 6731 - 6650
Alignment:
Q  130 tatgcatgtggtgccaacagagctacaa-ctccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||| ||| ||||||  ||| ||| ||| ||||||||||||||||| ||| |||| |||||||||||||| ||||    
T  6731 tatgcatgtggtaccatcagagcatcaagctctcttcgctaatgtcgtaattcgactt-gacatgctacaacccccttcgctt 6650  T

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Target: scaffold0174 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 3729 - 3775
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||| ||||||  ||||||||||||||||||||| ||||||||||    
T  3729 catcattaacaatagttcacataattccaactacaattcatcaatta 3775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 9851 - 9897
Alignment:
Q  8 catcatcaacaatgcttcacataattccaactacaaatcatcaatta 54  Q
    |||||| ||||||  ||||||||||||||||||||| ||||||||||    
T  9851 catcattaacaatagttcacataattccaactacaattcatcaatta 9897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0165 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Original strand, 31280 - 31345
Alignment:
Q  145 aacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||||||||||| ||||||||| ||||||| |  || ||||||||| ||||||| ||||    
T  31280 aacagagctacaactcccttcgctaatgtcataattcgac-atgtcaggctacagcccccttcgctt 31345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 211
Target Start/End: Complemental strand, 40074 - 40009
Alignment:
Q  145 aacagagctacaactccctttgctaatgtcgtaattcggctttgacaggctacaaccccctttgctt 211  Q
    |||||||||||||||||||| ||||||||| ||||||| |  || |||||||||| |||||| ||||    
T  40074 aacagagctacaactcccttcgctaatgtcataattcgac-atgtcaggctacaaaccccttcgctt 40009  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 59
Target Start/End: Original strand, 61446 - 61483
Alignment:
Q  22 cttcacataattccaactacaaatcatcaattaacttc 59  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  61446 cttcacatagttccaactataaatcatcaattaacttc 61483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 188329 - 188292
Alignment:
Q  18 aatgcttcacataattccaactacaaatcatcaattaa 55  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  188329 aatgcttcacataattccaactatacatcatcaattaa 188292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1256
Description:

Target: scaffold1256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 751 - 715
Alignment:
Q  23 ttcacataattccaactacaaatcatcaattaacttc 59  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  751 ttcacataattccaactataaatcatcaatcaacttc 715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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