View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18117_low_2 (Length: 482)
Name: NF18117_low_2
Description: NF18117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18117_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 21 - 473
Target Start/End: Original strand, 49583848 - 49584296
Alignment:
| Q |
21 |
ctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaaggcaaaagcaagaaatgcaacttagggcataaaattttcact |
120 |
Q |
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| T |
49583848 |
ctattatggaaaatttcgtaagtcttacaaatatcagagatggtgtggatgtagggaagggaaaagcaagaaatgcaacttagggcataaaattttcact |
49583947 |
T |
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| Q |
121 |
gaatcaaggcaacgtgagcttttgtttcgtctgatgccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaagt |
220 |
Q |
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| T |
49583948 |
gaatcaaggcaacgtgagcttttgtttcgtctgataccgaatgtaccggaggaagttcaaaatgaattacttgaggtaatgacataaacaatttcaaagt |
49584047 |
T |
|
| Q |
221 |
ttttcattttaatatcgattgttactccgtccactgtcatggattggatctatacttattgatttgtcttccatacttattatttgctatgttcaattga |
320 |
Q |
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| T |
49584048 |
ttttcattttaatatcgattgttactccgtccattgtcatggattggatctatacttattgatttgtcttccatactta----ttgctatgttcaattga |
49584143 |
T |
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| Q |
321 |
ttggtaggtgtcagagacacttgcagaaaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatgga |
420 |
Q |
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| T |
49584144 |
ttggtaggtgtcagagacacttgcagagaggaacattagtccagaagattatttttcgactctgaaaaatttaattgggctcaaagcccttgttgatgga |
49584243 |
T |
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| Q |
421 |
ttagcaatcggtaaaggnnnnnnngatcttatatgcccccatgttgatgatgt |
473 |
Q |
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| T |
49584244 |
ttagcaatcggtaaaggaaaaaaagatcttatatgcccccatgttgatgatgt |
49584296 |
T |
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