View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18117_low_3 (Length: 425)
Name: NF18117_low_3
Description: NF18117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18117_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 17 - 408
Target Start/End: Complemental strand, 6082363 - 6081989
Alignment:
| Q |
17 |
tctcccttgtctttttcccccactcccactgcttttgatccattaggagaattagccttcaaattatgctgattctgcatgcatattttggtcaaggaaa |
116 |
Q |
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| T |
6082363 |
tctcccttgtctttttcccccactcccactgcttttgatccattaggagaattagccttcaaattatgctgattctgcatgcatattttggtcaaggaaa |
6082264 |
T |
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| Q |
117 |
aaattatatactgctnnnnnnnnngagtctaaaattccaaatggtttgatcatgactacaaatacaataacaactttaaccatataataattaaatcttg |
216 |
Q |
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| T |
6082263 |
aaattatatactgctaaaaaaaga-agtctaaaattccaaatggtttgatcatggctacaaatacaataacaactttaaccatataataattaaatcttg |
6082165 |
T |
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| Q |
217 |
taatcaaataaatattacaatgtaactataatcacaaggaaaatatttaccttaacaaaataatttattccatacttacatgaccttctaagaatgaagt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
6082164 |
taatcaaataaatattacaatgtaactataatcacaaggaaaatatttacc----------------ttccatacttacatgaccttctaagaatgaagt |
6082081 |
T |
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| Q |
317 |
tgaagattcataagtttaggtgcaagaaatggttagttagaacatagaagttgagaaagtaaagagaacaatgaatatgataacgtgttgtg |
408 |
Q |
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||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6082080 |
tgaaggttgataagtttaggtgcaagaaatggttagttagaacatagaagttgagaaagtgaagagaacaatgaatatgataacgtgttgtg |
6081989 |
T |
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