View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18117_low_4 (Length: 401)
Name: NF18117_low_4
Description: NF18117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18117_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 29631861 - 29631638
Alignment:
| Q |
15 |
caaaagctgctgttttaccactaccagttttatcaattccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgaggaga |
114 |
Q |
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| T |
29631861 |
caaaagctgctgttttaccactaccagttttatcaattccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgcggaga |
29631762 |
T |
|
| Q |
115 |
ttgcatcccgagtttatcgcaaccccgcaccatccattccgagagtccgagatctgaaaacgacgtgtgtttgtcgtttccagcgttatcacagtccgtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29631761 |
ttgcatcccgagtttatcgcaaccccgcaccatccattccgagagtcctagatctgaaaacgacatgtgtttgtcgtttccagcgttatcacagtccgtt |
29631662 |
T |
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| Q |
215 |
gtattgcaatagctagctgctgag |
238 |
Q |
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||||| |||||||||||||||||| |
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| T |
29631661 |
gtattacaatagctagctgctgag |
29631638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 274 - 386
Target Start/End: Complemental strand, 29631603 - 29631491
Alignment:
| Q |
274 |
gaagtaagctgttacggttgaccaggaaggaagaaagggaaaggagagagtgcgactcactggttatgggagaaatccatgtgcggctgccaggtttaga |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29631603 |
gaagtaagctgttacggttgaccaggaaggaagaaagggaaaggagagagtgcgactcactggttatgggagaaatccatgtgcggctgccaggtttaga |
29631504 |
T |
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| Q |
374 |
atccatttcacag |
386 |
Q |
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| T |
29631503 |
atccatttcacag |
29631491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 15 - 174
Target Start/End: Complemental strand, 29630742 - 29630583
Alignment:
| Q |
15 |
caaaagctgctgttttaccactaccagttttatcaattccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgaggaga |
114 |
Q |
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|||||||||| ||||||||||||||||| | ||| ||||||| |||| |||||||||||||||||| |||||||||||| |||||||| |||| || | |
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| T |
29630742 |
caaaagctgccgttttaccactaccagtctcatcgattccaaccacatcacggccttctagaaccttaggaatgcagtgttgttgcacgcgccgcggtgt |
29630643 |
T |
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| Q |
115 |
ttgcatcccgagtttatcgcaaccccgcaccatccattccgagagtccgagatctgaaaa |
174 |
Q |
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|||||||||||| || | |||| | ||||| |||||||||||||||||||||| ||||| |
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| T |
29630642 |
ttgcatcccgagcttcttgcaattctgcaccgtccattccgagagtccgagatcggaaaa |
29630583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 28390248 - 28390281
Alignment:
| Q |
142 |
caccatccattccgagagtccgagatctgaaaac |
175 |
Q |
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| T |
28390248 |
caccatccattctgagagtccgagatctgaaaac |
28390281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 27663996 - 27664101
Alignment:
| Q |
23 |
gctgttttaccactaccagttttatcaattccaattacatgacggccttctagaacctttggaatgcagtgtcgttgcacgggccgaggagattgcatcc |
122 |
Q |
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||||||||||| || ||||||| || ||||| |||||||||||||| |||||| || || ||||||||| | |||||| |||| |||| || ||| | |
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| T |
27663996 |
gctgttttaccgcttccagtttggtcgattccgattacatgacggccagctagaatctgagggatgcagtgttgctgcacgcgccgtggagttttcattc |
27664095 |
T |
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| Q |
123 |
cgagtt |
128 |
Q |
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|||||| |
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| T |
27664096 |
cgagtt |
27664101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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