View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18118_high_1 (Length: 780)
Name: NF18118_high_1
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 508; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 219 - 762
Target Start/End: Original strand, 44956601 - 44957144
Alignment:
| Q |
219 |
acagtatggaggagtgattggtgctttcaactgtcaaggggcagggtgggacccaaaagagcacaagtttagaggattccctgaatgctacaatccaata |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44956601 |
acagtatggaggagtgattggtgctttcaactgtcaaggggcagggtgggacccaaaagagcacaagcttagaggattccctgaatgctacaatccaata |
44956700 |
T |
|
| Q |
319 |
gttggtactgtgcatgtaactgaagttgaatgggatcagacgaaagaagcatctcatttgggtaaggcagaagagtatgtggtctacttcaatcaagctg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44956701 |
gttggtactgtgcatgtaactgaagttgaatgggatcagaagaaagaagcatctcatttgggtaaagcagaagagtatgtggtctacttcaatcaagctg |
44956800 |
T |
|
| Q |
419 |
aagaactttgtttgatgactccaaattctgaatcaattcaatttatcattcaaccatccacttttgagctatacaattttgttccagtcaaaaagtttgg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44956801 |
aagaactttgtttgatgactccaaattctgaatcaattcaatttatcattcaaccatccacatttgagctatacaattttgttcaagtcaaaaagtttgg |
44956900 |
T |
|
| Q |
519 |
tggcaccatcaaatttgcaccaattggattgacaaacatgttcaatagtggtggaacaattcttgatttggaatatgttgaaagtggtgcaaagattaag |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44956901 |
tggcaccatcaaatttgcaccaattggattgacaaatatgttcaatagtggtggaacaattcttgatttggaatatgttgaaagtggtgcaaagattaag |
44957000 |
T |
|
| Q |
619 |
gttaaaggtggtgggaatttccttgcttattcaagtgaatcaccaaagaagtttcaattgaatggttctgaagtggcgtttgagtggctgggtgatggaa |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| || |
|
|
| T |
44957001 |
gttaaaggtggtgggaatttccttgcttattcaagtgaatcaccaaagaagtttcaattgaatggttttgaagtggcgtttgagtggatgggtgatgaaa |
44957100 |
T |
|
| Q |
719 |
agttgactctcaatgttccttggattgatgaggctggtggggtt |
762 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44957101 |
agttgactctcaatgttccttggattgatgaggctggtggggtt |
44957144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 218 - 768
Target Start/End: Complemental strand, 43562469 - 43561919
Alignment:
| Q |
218 |
aacagtatggaggagtgattggtgctttcaactgtcaaggggcagggtgggacccaaaagagcacaagtttagaggattccctgaatgctacaatccaat |
317 |
Q |
| |
|
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || || |
|
|
| T |
43562469 |
aacagtatgggggagtgattggtgcattcaactgtcaaggggccgggtgggacccaaaagagcacaagtttaggggattccctgaatgctacaagcctat |
43562370 |
T |
|
| Q |
318 |
agttggtactgtgcatgtaactgaagttgaatgggatcagacgaaagaagcatctcatttgggtaaggcagaagagtatgtggtctacttcaatcaagct |
417 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
43562369 |
aactggcactgtgcatgtaactgaagttgaatggaatcagaagaaagaagcatctcatttgggtaaggcagaagaatatgcagtctacttcaatcaagct |
43562270 |
T |
|
| Q |
418 |
gaagaactttgtttgatgactccaaattctgaatcaattcaatttatcattcaaccatccacttttgagctatacaattttgttccagtcaaaaagtttg |
517 |
Q |
| |
|
||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43562269 |
caagaactttctttgatgactccaaaatctgaaccaattcactttatcattcaaccatccacatttgagctatacaattttgttccagtcacaaagtttg |
43562170 |
T |
|
| Q |
518 |
gtggcaccatcaaatttgcaccaattggattgacaaacatgttcaatagtggtggaacaattcttgatttggaatatgttgaaagtggtgcaaagattaa |
617 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43562169 |
gtggcaacatcaaatttgcacccattggattgacaaacatgttcaacagtggtggaacaattcttgatttggaatatgttgaaagtggtgctaagattaa |
43562070 |
T |
|
| Q |
618 |
ggttaaaggtggtgggaatttccttgcttattcaagtgaatcaccaaagaagtttcaattgaatggttctgaagtggcgtttgagtggctgggtgatgga |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||| ||||||||| |
|
|
| T |
43562069 |
ggttaaaggtggtgggaatttccttgcttattcaagtgaatcaccaaagaagtttcaactgaatggttctaatgtggattttgagtggctaggtgatgga |
43561970 |
T |
|
| Q |
718 |
aagttgactctcaatgttccttggattgatgaggctggtggggtttctgat |
768 |
Q |
| |
|
|| || |||||||||||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
43561969 |
aaattatctctcaatgttccttggattgaagaggcttgtggtgtttctgat |
43561919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 220 - 767
Target Start/End: Complemental strand, 36430194 - 36429647
Alignment:
| Q |
220 |
cagtatggaggagtgattggtgctttcaactgtcaaggggcagggtgggacccaaaagagcacaagtttagaggattccctgaatgctacaatccaatag |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
36430194 |
cagtatggaggagtgattggtgctttcaactgtcaaggggccgggtgggatccaaaagagcacaagtttaggggattccctgaatgctacaagccaataa |
36430095 |
T |
|
| Q |
320 |
ttggtactgtgcatgtaactgaagttgaatgggatcagacgaaagaagcatctcatttgggtaaggcagaagagtatgtggtctacttcaatcaagctga |
419 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||| | |||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36430094 |
ctggaactgtgcatgtaactgaagttgaatgggctcaaaagaaataggcatctcatttgggtaaggcagaagagtatgtagtctacttcaatcaagctga |
36429995 |
T |
|
| Q |
420 |
agaactttgtttgatgactccaaattctgaatcaattcaatttatcattcaaccatccacttttgagctatacaattttgttccagtcaaaaagtttggt |
519 |
Q |
| |
|
||||||| |||||||||| ||||| |||||| |||| | | ||||||||| |||||||| |||||| ||||||||||||||||| | | |||| | || |
|
|
| T |
36429994 |
agaacttcgtttgatgaccccaaaatctgaaccaatcaagtatatcattcagccatccacctttgagttatacaattttgttccacttacaaagctaggg |
36429895 |
T |
|
| Q |
520 |
ggcaccatcaaatttgcaccaattggattgacaaacatgttcaatagtggtggaacaattcttgatttggaatatgttgaaagtggtgcaaagattaagg |
619 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||| ||||||||||||| ||| |||||||| |||||| ||| |
|
|
| T |
36429894 |
ggcaacatcaaatttgcaccaattgggttgacaaatatgttcaacagtggtggaacagttctagatttggaatatgctgagagtggtgctaagattcagg |
36429795 |
T |
|
| Q |
620 |
ttaaaggtggtgggaatttccttgcttattcaagtgaatcaccaaagaagtttcaattgaatggttctgaagtggcgtttgagtggctgggtgatggaaa |
719 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36429794 |
ttaaaggtggtggaaatttccttgcttattcaagtgaatcaccaaagaagtttcaattgaatggttctgaagtggcttttgagtggctgggtgatggaaa |
36429695 |
T |
|
| Q |
720 |
gttgactctcaatgttccttggattgatgaggctggtggggtttctga |
767 |
Q |
| |
|
|| ||||||||||| |||||||||| |||||| |||| || ||||| |
|
|
| T |
36429694 |
actgtctctcaatgtttcttggattgaagaggctagtggtgtgtctga |
36429647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 207
Target Start/End: Complemental strand, 40670287 - 40670176
Alignment:
| Q |
97 |
ggagagaagtgggtgtgaatttgcaaaattacccctaatataattaat-aaaagatgccacatagaagatgtacaaagggggttgccacataagtatgta |
195 |
Q |
| |
|
|||||| || |||||||||||| ||||||| ||| |||| |||||||| |||| |||| |||||| || |||| || |||| |||||||||||| |||| |
|
|
| T |
40670287 |
ggagagcagcgggtgtgaatttacaaaattgcccttaatgtaattaataaaaaaatgctacataggaggtgtataagggggtttgccacataagaatgtt |
40670188 |
T |
|
| Q |
196 |
tgtgtatcagca |
207 |
Q |
| |
|
||||| |||||| |
|
|
| T |
40670187 |
tgtgtttcagca |
40670176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 213 - 768
Target Start/End: Original strand, 43976538 - 43977093
Alignment:
| Q |
213 |
tatttaacagtatggaggagtgattggtgctttcaactgtcaaggggcagggtgggacccaaaagagcacaagtttagaggattccctgaatgctacaat |
312 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || || || ||||||||||||||||| |
|
|
| T |
43976538 |
tattcaacagtatggaggagtgattggtgctttcaactgtcaagggtcagggtgggacccaaaagtgcacacattcaggggcttccctgaatgctacaag |
43976637 |
T |
|
| Q |
313 |
ccaatagttggtactgtgcatgtaactgaagttgaatgggatcagacgaaagaagcatctcatttgggtaaggcagaagagtatgtggtctacttcaatc |
412 |
Q |
| |
|
|| ||| |||| |||||||||||||||| |||||||||||||| | |||||||||| |||||||| ||||| ||||||||||| |||||||| |||| |
|
|
| T |
43976638 |
cccataactggttctgtgcatgtaactgaggttgaatgggatcaaaagaaagaagcagtgcatttgggcaaggctgaagagtatgtagtctacttgaatc |
43976737 |
T |
|
| Q |
413 |
aagctgaagaactttgtttgatgactccaaattctgaatcaattcaatttatcattcaaccatccacttttgagctatacaattttgttccagtcaaaaa |
512 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||||| |||| ||||||||||||||||||| || |||||| |||||||||||||||| |||| ||| |
|
|
| T |
43976738 |
aagccgaagaactttgtttgatgactccgaagtctgaaccaatcaaatttatcattcaaccatctacctttgagttatacaattttgttcctgtcacaaa |
43976837 |
T |
|
| Q |
513 |
gtttggtggcaccatcaaatttgcaccaattggattgacaaacatgttcaatagtggtggaacaattcttgatttggaatatgttgaaagtggtgcaaag |
612 |
Q |
| |
|
| | ||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||| | | |
|
|
| T |
43976838 |
gctaggtggcagtatcaaatttgcaccaattggattggcaaacatgttcaacagtggtggaacaattctagatttggaatatgttgaaagttgtgctatg |
43976937 |
T |
|
| Q |
613 |
attaaggttaaaggtggtgggaatttccttgcttattcaagtgaatcaccaaagaagtttcaattgaatggttctgaagtggcgtttgagtggctgggtg |
712 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| ||||||||| || ||| |
|
|
| T |
43976938 |
atcaaggttaaaggtggtggaaatttccttgcttattcaaatgaatcaccagagaagtgtcaattgaatggttctgaagtggcttttgagtggttgagtg |
43977037 |
T |
|
| Q |
713 |
atggaaagttgactctcaatgttccttggattgatgaggctggtggggtttctgat |
768 |
Q |
| |
|
||||||| ||| || ||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
43977038 |
atggaaaattgtctttcaatgttccttggattgaagaggctggtggagtttctgat |
43977093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 4e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 94 - 210
Target Start/End: Complemental strand, 31858978 - 31858862
Alignment:
| Q |
94 |
agaggagagaagtgggtgtgaatttgcaaaattacccctaatataattaataaaagatgccacatagaagatgtacaaagggggttgccacataagtatg |
193 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||| | |||| |||||| |||| ||| |
|
|
| T |
31858978 |
agaggagagaagtgggtgtgaatttacaaaattacccttaatataattaataaacaatgccacatagaaggtgtataggggggtttgccatataatgatg |
31858879 |
T |
|
| Q |
194 |
tatgtgtatcagcactc |
210 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
31858878 |
tttgtgtatcagcactc |
31858862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 2915857 - 2915742
Alignment:
| Q |
97 |
ggagagaagtgggtgtgaatttgcaaaattacccctaatataattaataaaagatgccacatagaagatgtacaaagggggttgccacataagtatgtat |
196 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| ||| |||| |||||||||||| |||| |||||| || |||| || |||| |||||||||||| |||| | |
|
|
| T |
2915857 |
ggagagcagtgggtgtgaatttacaaaattgcccttaatgtaattaataaaaaatgctacataggaggtgtataagggggtttgccacataagaatgttt |
2915758 |
T |
|
| Q |
197 |
gtgtatcagcactcta |
212 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2915757 |
gtgtatcagcactcta |
2915742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 120 - 205
Target Start/End: Original strand, 6310245 - 6310331
Alignment:
| Q |
120 |
caaaattacccctaatataattaataaaagatgccacatagaagatgtacaaaggggg-ttgccacataagtatgtatgtgtatcag |
205 |
Q |
| |
|
||||||||||| ||||| ||||||| ||| |||||||||| | ||||||||||||| |||||| ||||| | |||||||||||| |
|
|
| T |
6310245 |
caaaattacccttaataaaattaattaaaaatgccacatatggggtgtacaaagggggtttgccagctaagtgtatatgtgtatcag |
6310331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University