View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18118_high_7 (Length: 358)

Name: NF18118_high_7
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18118_high_7
NF18118_high_7
[»] chr8 (1 HSPs)
chr8 (5-341)||(15138672-15139008)
[»] scaffold0024 (1 HSPs)
scaffold0024 (295-342)||(37900-37947)
[»] chr7 (1 HSPs)
chr7 (295-342)||(1694776-1694823)
[»] chr4 (1 HSPs)
chr4 (295-342)||(23621293-23621340)
[»] chr3 (7 HSPs)
chr3 (295-342)||(16012904-16012951)
chr3 (295-342)||(23550659-23550706)
chr3 (295-342)||(45338831-45338878)
chr3 (287-342)||(47450750-47450805)
chr3 (295-342)||(52460156-52460203)
chr3 (295-342)||(53582915-53582962)
chr3 (291-341)||(24228919-24228969)
[»] chr2 (3 HSPs)
chr2 (295-342)||(10362496-10362543)
chr2 (287-342)||(44159889-44159944)
chr2 (295-342)||(16064921-16064969)
[»] chr1 (4 HSPs)
chr1 (295-342)||(34639098-34639145)
chr1 (295-342)||(41885067-41885114)
chr1 (274-342)||(45143553-45143621)
chr1 (295-339)||(46939216-46939260)
[»] scaffold0508 (1 HSPs)
scaffold0508 (278-342)||(6256-6320)
[»] chr6 (1 HSPs)
chr6 (278-342)||(33858719-33858783)


Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 5 - 341
Target Start/End: Original strand, 15138672 - 15139008
Alignment:
Q  5 gatgacatattcttgtacacaagcgtaacttctgggattaatatgcttggttttaatgcctgtatgataataatcatcatgtagcttctgaaaatgcttt 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15138672 gatgacatattcttgtacacaagcgtaacttctgggattaatatgcttggttttaatgcctgtatgataataatcatcatgtagcttctgaaaatgcttt 15138771  T
Q  105 aacctagcatgagtatgctttgcattttagcaaagtccagtggaaattgaatgctctattctgtttttgcattccaaatttcaccatatttatctttatc 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15138772 aacctagcatgagtatgctttgcattttagcaaagtccagtggaaattgaatgctctattctgtttttgcattccaaatttcaccatatttatctttatc 15138871  T
Q  205 attggagccaaaacaaaatggttccgcacaactctataagcatgaacctgttatagtagggtaagggctactattttctttgaggtttacatatgttttt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15138872 attggagccaaaacaaaatggttccgcacaactctataagcatgaacctgttatagtagggtaagggctactattttctttgaggtttacatatgttttt 15138971  T
Q  305 ggtccctctaaatataccactttttggtattagtccc 341  Q
    |||||||||||||||||||||||||||||||||||||    
T  15138972 ggtccctctaaatataccactttttggtattagtccc 15139008  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 37947 - 37900
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  37947 atatgtttttggtccctataaatataccaatttttcgttttagtccct 37900  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 1694823 - 1694776
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  1694823 atatgtttttggtccctataaatataccaatttttcgttttagtccct 1694776  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 23621293 - 23621340
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  23621293 atatgtttttggtccctataaatataccaatttttcgttttagtccct 23621340  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 16012904 - 16012951
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| |||||||| || |||||||| |||||||||    
T  16012904 atatgtttttggtccctataaatatatcaatttttggttttagtccct 16012951  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 23550659 - 23550706
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  23550659 atatgtttttggtccctataaatataccaatttttcgttttagtccct 23550706  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 45338831 - 45338878
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  45338831 atatgtttttggtccctataaatataccaatttttcgttttagtccct 45338878  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 47450750 - 47450805
Alignment:
Q  287 aggtttacatatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||| || |||||||||    
T  47450750 aggtttaaatatgtttttggtccctgtaaatatactaatttttcgttttagtccct 47450805  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 52460203 - 52460156
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  52460203 atatgtttttggtccctataaatataccaatttttcgttttagtccct 52460156  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 53582962 - 53582915
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  53582962 atatgtttttggtccctataaatataccaattttttgttttagtccct 53582915  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 24228969 - 24228919
Alignment:
Q  291 ttacatatgtttttggtccctctaaatataccactttttggtattagtccc 341  Q
    ||||||||||||||||||||| |||||||||||  |||| || ||||||||    
T  24228969 ttacatatgtttttggtccctataaatataccaactttttgttttagtccc 24228919  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 10362543 - 10362496
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  10362543 atatgtttttggtccctataaatataccaatttttcgttttagtccct 10362496  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 44159944 - 44159889
Alignment:
Q  287 aggtttacatatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||| ||||||||||||||||| ||||||||| | ||||| || |||||||||    
T  44159944 aggtttaaatatgtttttggtccctataaatatacaaatttttcgttttagtccct 44159889  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 16064969 - 16064921
Alignment:
Q  295 atatgtttttggtccctctaaatatacc-actttttggtattagtccct 342  Q
    ||||||||||||||||| |||||||||| ||||||| || |||||||||    
T  16064969 atatgtttttggtccctataaatataccaactttttcgttttagtccct 16064921  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 34639145 - 34639098
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  34639145 atatgtttttggtccctataaatataccaattttttgttttagtccct 34639098  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 41885067 - 41885114
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    ||||||||||||||||| ||||||||||| ||||| || |||||||||    
T  41885067 atatgtttttggtccctataaatataccaatttttcgttttagtccct 41885114  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 342
Target Start/End: Original strand, 45143553 - 45143621
Alignment:
Q  274 actattttctttgaggtttacatatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    |||||||| |||  || ||| ||||||||||||||||| |||||||||||  |||| || |||||||||    
T  45143553 actattttttttttgggttaaatatgtttttggtccctataaatataccaactttttgttttagtccct 45143621  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 339
Target Start/End: Original strand, 46939216 - 46939260
Alignment:
Q  295 atatgtttttggtccctctaaatataccactttttggtattagtc 339  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||||    
T  46939216 atatgtttttggtccctataaatataccaatttttcgttttagtc 46939260  T

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Target: scaffold0508 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 6256 - 6320
Alignment:
Q  278 ttttctttgaggtttacatatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    |||| ||| ||| ||| ||||||||||||||||| |||||||||||  |||| || |||||||||    
T  6256 ttttttttaagggttaaatatgtttttggtccctataaatataccaacttttcgttttagtccct 6320  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Complemental strand, 33858783 - 33858719
Alignment:
Q  278 ttttctttgaggtttacatatgtttttggtccctctaaatataccactttttggtattagtccct 342  Q
    |||| ||| ||| ||| ||||||||||||||||| |||||||||||  |||| || |||||||||    
T  33858783 ttttattttagggttaaatatgtttttggtccctataaatataccaacttttcgttttagtccct 33858719  T

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