View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18118_low_10 (Length: 330)
Name: NF18118_low_10
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 32313024 - 32313328
Alignment:
| Q |
16 |
caagtttattgctatgctgcatagtctatactctgttagttgtttttgaaatgttttcatctgcaaattgattagagtgtgattagtaatggccctattc |
115 |
Q |
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| T |
32313024 |
caagtttattgctatgctgcatagtctatactttgttagttgtttttgaaatgttttcatctgcaaattgattagagtgtgattagtaatggccctattc |
32313123 |
T |
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| Q |
116 |
cccattatgcttcacaaccttctcatgcttgttctattatgtgatcatttcatggtcaaaccaataaaaactttatgcactttttaatataaagtatatg |
215 |
Q |
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| T |
32313124 |
cccattatgcttcacaaccttctcatgcttggtctattatgtgatcatttcatggtcaaaccaataaaaactttatgcactttttaatataaagtata-- |
32313221 |
T |
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| Q |
216 |
aattgctttaacttaaaatttaaaatttaaattgtatgtaacaatgcaagccttttcattccattttggttatttattttagtgactactataaaccttt |
315 |
Q |
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| T |
32313222 |
aattgctttaacttaaaatttaaaatttaaattgtatgtaacaatgcaagccttttaatttcattttggttatttattttagtgactactataaaccttt |
32313321 |
T |
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| Q |
316 |
tttccct |
322 |
Q |
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||||||| |
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| T |
32313322 |
tttccct |
32313328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 137 - 308
Target Start/End: Complemental strand, 39365098 - 39364924
Alignment:
| Q |
137 |
ctcatgcttgttctattatgtgatcatttcatggtcaaaccaataaaaa-----ctttatgcactttttaat-ataaagtat----atgaattgctttaa |
226 |
Q |
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| T |
39365098 |
ctcatgcttgttctatcatgtgatcatttcatggtcaaaccaataaaaaaaaaactttgtgcacttttttattatgaagtatgaatatgaattgctttaa |
39364999 |
T |
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| Q |
227 |
cttaaaatttaaaatttaaattgtatgtaacaatgcaagccttttcattccattttggttatttattttagtgactactata |
308 |
Q |
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| T |
39364998 |
-------tttaaaacttaaattgtatgtaacgatgcaagctttttcattccattttagttatttattttagtgactactata |
39364924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 32788123 - 32788087
Alignment:
| Q |
52 |
tagttgtttttgaaatgttttcatctgcaaattgatt |
88 |
Q |
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| T |
32788123 |
tagttgttttttaaatgttttcatctgcaaattgatt |
32788087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 32788175 - 32788139
Alignment:
| Q |
15 |
tcaagtttattgctatgctgcatagtctatactctgt |
51 |
Q |
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| T |
32788175 |
tcaagtttattactatgctgcatagtctatactctgt |
32788139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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