View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18118_low_11 (Length: 327)
Name: NF18118_low_11
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_low_11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 327
Target Start/End: Complemental strand, 54985412 - 54985103
Alignment:
| Q |
18 |
atgcacatctgatactactctacggtttctagaacatattgcaagtgctgcaattggacccctcatagattaccagtgagaaaatcatgaagttccagca |
117 |
Q |
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| T |
54985412 |
atgcacatctgatactgctctacggtttctagaacatattgcaagtgctgcaattggacccctcatagattaccagtgagaaaatcatgaagttcgagca |
54985313 |
T |
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| Q |
118 |
caataattttgtggtgcttcagaagcaacctccctgataaatttaacataaaagatttttcaaaagaaaataacataacattcataaaaagcaagatagt |
217 |
Q |
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| T |
54985312 |
caataattttgtggtgcttcagaagcaacctccctgataaatttaacataaaagatttttcaaaagaaaataacataacattcataaaaagcaagatagt |
54985213 |
T |
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| Q |
218 |
gagtaatgttagttaagtagctgagcacatttaatgatcccattagaatggcttgaatgcaatatttgtgcagttagccaccagacctacaaaagtgaga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
54985212 |
gagtaatgttagttaagtagctgagcacatttaatgatctcattagaatggcttgaatgcaatatttgtgcagttagacaccagacctacaaaagtgaga |
54985113 |
T |
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| Q |
318 |
tttccaattc |
327 |
Q |
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|||||||||| |
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| T |
54985112 |
tttccaattc |
54985103 |
T |
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