View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18118_low_12 (Length: 318)
Name: NF18118_low_12
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 302
Target Start/End: Original strand, 43665673 - 43665958
Alignment:
| Q |
13 |
gcagagaaaaggtaaaactaaaacaaattctgaaaagtttgaacactatacacatccaatcattcatgaccagtaaccactacattgattatggttgatc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665673 |
gcagagaaaaggtaaaactaaaacaaattctgaaaagtttgaacactatacacatccaatcattcatgaccagtaaccactacattgattatggttgatc |
43665772 |
T |
|
| Q |
113 |
tggaagatgactcagtctaaactagaactacttaaaagacattctacaaactctaaaggaaagtgctaatttcagcttcaaagaagaaagcagtgctgat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665773 |
tggaagatgactcagtctaaactagaactacttaaaagacattctacaaactctaaagtaaagtgctaatttcagcttcaaagaagaaagcagtgctgat |
43665872 |
T |
|
| Q |
213 |
taaattaattagctaacctccctataattacgcaccaaaccttcaggttccagtggtgctatagttacaattgtttcgggcaccggaaac |
302 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43665873 |
ta----aattagctaacctccctataattacgcaccaaaccttcaggttccagtggtgctatagttacaattgtttcgggcaccggaaac |
43665958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University