View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18118_low_2 (Length: 605)
Name: NF18118_low_2
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18118_low_2 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 1 - 564
Target Start/End: Original strand, 32313333 - 32313896
Alignment:
| Q |
1 |
tctattcttcttgcccaatttaacgttgaagggtatatttggagttgatgatacctttgaagtcaactagtttgagctacgattattcaactctaatcca |
100 |
Q |
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| T |
32313333 |
tctattcttcttgcccaatttaacgttgaagggtatattaggagttgatgatacctttgaagtcaactagtttgagctacgattattcaactctaatcca |
32313432 |
T |
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| Q |
101 |
taaatgcatcaaatcaatccagttaactcggtgataaactagtttctttggttcagtcattggagcataaggcataagatactacaattcnnnnnnntca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
32313433 |
taaatgcatcaaatcaatccagttaactcggtgataaactagtttctttggttcagtcattggagcataaggcataagatactacaattcaaaaaaatca |
32313532 |
T |
|
| Q |
201 |
ttaaaagacattctcttttaaaattttaacggttagactacagttgccttgtagaaatatcgaatctacatacatatannnnnnnggtagacaaaatgac |
300 |
Q |
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| T |
32313533 |
ttaaaagacattctcttttaaaattttaacggttagactacagttgccttgtagaaatatcgaatctacatacatatatttttttggtagataaaatgac |
32313632 |
T |
|
| Q |
301 |
aacaatcattaaaaacttacacataaggaattggggttcgaaccacaatcatgacgtccaacttaagaatttcaacatttttccgattgagttataggat |
400 |
Q |
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| T |
32313633 |
agcaatcattaaaaacttacacataaggaattggggttcgaaccacaatcatgacgtccaacttaagaatttcaacattttttcgattgagttataggat |
32313732 |
T |
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| Q |
401 |
tgttggaccttttaacatattttatccatcaaatatctataaactaaaatccgaggtttagatcacaagagatatatatgttttaatagatctttattgt |
500 |
Q |
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| T |
32313733 |
tgttggaccttttaacatattttatccatcaaatatctatagactaaaatccgaggtttagatcacaagagatatatgtgttttaatagatctttattgt |
32313832 |
T |
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| Q |
501 |
caaaccacatcttaaagaactggaaagatattcattttttatgaactagaaatatctgctgatt |
564 |
Q |
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| T |
32313833 |
caaaccacatcttaaagaactggaaagatattctttttttatgaactagaaatatctgctgatt |
32313896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 39364900 - 39364813
Alignment:
| Q |
1 |
tctattcttcttgcccaatttaacgttgaagggtatatttggagttgatgatacctttgaagtcaactagtttgagctacgattattca |
89 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
39364900 |
tctattcttcttccccaatttaaccttgaagtgtatatt-ggagttgatgatacctttgaagtcaactagtttgaggaaggattattca |
39364813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 32566357 - 32566481
Alignment:
| Q |
129 |
cggtgataaactagtttctttggttcagtcattggagcataaggcataagatac---tacaattcnnnnnnntcattaaaagacattctcttttaaaatt |
225 |
Q |
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| T |
32566357 |
cggtgataagctagtttctttggttcggtcaatggagcatacggcataagatactcttacaattcaaaaaaataattaaaagacattctcttttaaaatc |
32566456 |
T |
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| Q |
226 |
ttaacggttagactacagttgcctt |
250 |
Q |
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| T |
32566457 |
tcaacgattagactaaggttgcctt |
32566481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 479
Target Start/End: Original strand, 32566656 - 32566718
Alignment:
| Q |
417 |
atattttatccatcaaatatctataaactaaaatccgaggtttagatcacaagagatatatat |
479 |
Q |
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| T |
32566656 |
atattttatccatcaaatatctacagactaagatctggggtttagatcataatatatatatat |
32566718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 19369 - 19418
Alignment:
| Q |
333 |
ggggttcgaaccacaatcatgacgtccaacttaagaatttcaacattttt |
382 |
Q |
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| T |
19369 |
ggggttcgaaccccaatcatgacgtccggcctaacaatttcaacattttt |
19418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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