View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18118_low_3 (Length: 539)

Name: NF18118_low_3
Description: NF18118
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18118_low_3
NF18118_low_3
[»] chr2 (8 HSPs)
chr2 (2-196)||(39528063-39528257)
chr2 (1-225)||(23906763-23906987)
chr2 (14-196)||(23248102-23248284)
chr2 (65-199)||(22520799-22520933)
chr2 (20-141)||(20186248-20186369)
chr2 (1-93)||(35923333-35923426)
chr2 (1-113)||(22524369-22524480)
chr2 (135-196)||(23247197-23247258)
[»] chr6 (10 HSPs)
chr6 (20-225)||(7847413-7847618)
chr6 (1-225)||(31475561-31475785)
chr6 (1-225)||(31495397-31495621)
chr6 (1-225)||(31500783-31501007)
chr6 (1-225)||(27122611-27122826)
chr6 (7-225)||(34486544-34486763)
chr6 (1-199)||(14744581-14744782)
chr6 (29-225)||(22397272-22397468)
chr6 (1-225)||(31515286-31515511)
chr6 (1-225)||(8885087-8885308)
[»] chr5 (3 HSPs)
chr5 (339-524)||(8794808-8794999)
chr5 (1-89)||(8794995-8795083)
chr5 (105-224)||(19018914-19019033)
[»] chr4 (4 HSPs)
chr4 (1-199)||(6820372-6820570)
chr4 (1-199)||(17417604-17417802)
chr4 (4-225)||(19729294-19729515)
chr4 (20-216)||(3577142-3577329)
[»] scaffold0289 (1 HSPs)
scaffold0289 (1-225)||(10438-10665)
[»] chr8 (2 HSPs)
chr8 (5-225)||(17863093-17863318)
chr8 (1-199)||(11283976-11284168)
[»] scaffold0061 (1 HSPs)
scaffold0061 (1-194)||(18989-19185)
[»] scaffold0010 (1 HSPs)
scaffold0010 (4-199)||(141260-141456)
[»] scaffold1043 (1 HSPs)
scaffold1043 (4-199)||(2293-2490)
[»] chr7 (3 HSPs)
chr7 (13-196)||(3090147-3090331)
chr7 (4-118)||(16074888-16075002)
chr7 (25-192)||(5046252-5046419)
[»] scaffold0042 (1 HSPs)
scaffold0042 (7-221)||(60185-60398)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 39528257 - 39528063
Alignment:
2 aaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaat 101  Q
    |||||||||| |||||||| ||||| ||||| ||| ||||||||||||||| ||| || ||||||||||||||||||||| ||||||||||| | ||| |    
39528257 aaataaaaacatttctattgatatagaaattattctacaagatttaggataacacattaactcataacaaacataattcatatttcacttccttgaaact 39528158  T
102 tacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca 196  Q
    || |||||||||||||| ||||| ||| |||||||||||||||||||||| ||||||||||||| || |||| || |||||||||||||||||||    
39528157 tataataatattaacatcgaatcatttacttttgaaaatactttcttttacatcatagaaaatggttttcttatataaaactaaataagtaagca 39528063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 23906763 - 23906987
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| | |||| | |||||  |||||||||||||||||||||| | ||| |||||||||||||||||||||||| ||||||||||  ||||||    
23906763 caaataaaaacttctctaatgatataggaattcttccacaagatttaggagatcacattgactcataacaaacataattcagatttcacttcattaaaaa 23906862  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatatt 200  Q
    ||| | |||||||||||||||||| ||| |||||||||||||||  |||||||||||||| |||| || |||| |||||||  ||||||||||||||||     
23906863 ttatagtaatattaacattgaatctttttcttttgaaaatacttcattttaaatcatagacaatggttttcttgtacaaaatgaaataagtaagcatatc 23906962  T
201 cccttcctagtgtcaccatcagagc 225  Q
    || || |  ||||||| ||||||||    
23906963 ccttttcccgtgtcactatcagagc 23906987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 23248284 - 23248102
Alignment:
14 ttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatatt 113  Q
    |||||||||||||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||| | ||||||  |||| ||||    
23248284 ttctattaatataagaattctttcacaagatttaggataccacattgattcataacgaacataattcacatttcacttccttgaaaattgtaatactatt 23248185  T
114 aacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca 196  Q
    ||||| ||||| |||||||||||||||||||||||||| |  ||||| |||| || |||| || ||||||||| |||||||||    
23248184 aacatcgaatcttttgcttttgaaaatactttcttttacaatatagataatggttatcttgtaaaaaactaaacaagtaagca 23248102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 65 - 199
Target Start/End: Original strand, 22520799 - 22520933
Alignment:
65 ataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaat 164  Q
    ||||||||||||||||| ||||||||  | | ||||||| |||||||||||||| ||||| ||||||||||||| |||||||||||| |||||| | |||    
22520799 ataacaaacataattcatatttcactctcttgaaaattataataatattaacatcgaatcttttgcttttgaaagtactttcttttatatcataaataat 22520898  T
165 gattctcttttacaaaactaaataagtaagcatat 199  Q
    | || |||| |||||||||||||||||||||||||    
22520899 ggttttcttgtacaaaactaaataagtaagcatat 22520933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 20186369 - 20186248
Alignment:
20 taatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacatt 119  Q
    ||||||||||||||||||||||||| ||||||| ||| |||| |||||||||| |||||||| ||||||||||| | ||||||| ||||||||||||||     
20186369 taatataaaaattcttccacaagatgtaggatatcacattgaatcataacaaatataattcagatttcacttccttgaaaattataataatattaacatc 20186270  T
120 gaatcctttgcttttgaaaata 141  Q
     | |  ||||||||||||||||    
20186269 aagtattttgcttttgaaaata 20186248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 35923426 - 35923333
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcat-aacaaacataattcacatttcacttcc 93  Q
    ||||||||| | ||||||||||||||| |||||| |||| |||||||||||| ||| | ||||||| || ||||||||||||||||||||||||    
35923426 caaataaaagcatttctattaatataagaattctcccactagatttaggatatcacatagactcataaaaaaacataattcacatttcacttcc 35923333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 22524369 - 22524480
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| || ||| |||||||| |||| ||||| |||||  |||||| |||   |||||||||||||||||||||| ||||||||||| | ||||    
22524369 caaataaaaactttcctaataatataagaatttttccataagatc-aggatatcacaccgactcataacaaacataattcagatttcacttccttgaaaa 22524467  T
101 ttacaataatatt 113  Q
    | | |||||||||    
22524468 tgataataatatt 22524480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 135 - 196
Target Start/End: Complemental strand, 23247258 - 23247197
Alignment:
135 gaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca 196  Q
    ||||||||||||||||| || ||||| |||| || |||| |||||||||||| |||||||||    
23247258 gaaaatactttcttttacattatagataatggttatcttgtacaaaactaaacaagtaagca 23247197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 20 - 225
Target Start/End: Original strand, 7847413 - 7847618
Alignment:
20 taatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacatt 119  Q
    |||||||| |||| |||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| | ||||||| |||||||||||||      
7847413 taatataagaatttttccacaagatttaagataccacattgactcatagcaaacataattcacatttcacttccttgaaaattataataatattaacacc 7847512  T
120 gaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccat 219  Q
    ||||| ||| |||||||||||||||||||||| |||||| | |||| || |||| ||||||||||||||||||||||||| || || |  ||||||| ||    
7847513 gaatctttttcttttgaaaatactttcttttacatcataaacaatggttttcttatacaaaactaaataagtaagcatatcccttttcccgtgtcactat 7847612  T
220 cagagc 225  Q
    ||||||    
7847613 cagagc 7847618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31475785 - 31475561
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| ||||||||||||||| ||||||||  |||||||||||||| ||  |||||||||||||||||||||||| ||||| ||||| | ||||    
31475785 caaataaaaacttttctattaatataagaattcttctgcaagatttaggatatcagattgactcataacaaacataattcaaatttcccttccttgaaaa 31475686  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatatt 200  Q
    |||  ||||||||||||||||||| |||||||||||||||| ||||| ||| |||| |   ||||||| |||| ||||||| |||||||||||||||||     
31475685 ttattataatattaacattgaatcttttgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaataagtaagcatatc 31475586  T
201 cccttcctagtgtcaccatcagagc 225  Q
    || || |  ||||||| ||||||||    
31475585 ccttttcccgtgtcactatcagagc 31475561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31495621 - 31495397
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| ||||||||||||||| |||||||   |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||    
31495621 caaataaaaacttttctattaatataagaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaa 31495522  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatatt 200  Q
    |||  ||||||||||||||||||| |||||||||||||||| ||||| ||| |||| |   ||||||| |||| ||||||| |||||||||||||||||     
31495521 ttattataatattaacattgaatcttttgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaataagtaagcatatc 31495422  T
201 cccttcctagtgtcaccatcagagc 225  Q
    || || |  ||||||| ||||||||    
31495421 ccttttcccgtgtcactatcagagc 31495397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31501007 - 31500783
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| ||||||||||||||| |||||||   |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||    
31501007 caaataaaaacttttctattaatataagaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaa 31500908  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatatt 200  Q
    |||  ||||||||||||||||||| |||||||||||||||| ||||| ||| |||| |   ||||||| |||| ||||||| |||||||||||||||||     
31500907 ttattataatattaacattgaatcttttgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaataagtaagcatatc 31500808  T
201 cccttcctagtgtcaccatcagagc 225  Q
    || || |  ||||||| ||||||||    
31500807 ccttttcccgtgtcactatcagagc 31500783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 27122826 - 27122611
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| || |||| ||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  | ||||    
27122826 caaataaaaactttcctataaatataagaattctcccacaagatttaggataccacattgactcataacaaacataattcacatttcacttctttgaaaa 27122727  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatatt 200  Q
    |||         |||||| ||||||||||||||| || ||||||||||||| | ||||||||||  || |||| |||||||||||||||||||||||||     
27122726 tta---------taacatcgaatcctttgcttttcaatatactttcttttacaacatagaaaatagttttcttgtacaaaactaaataagtaagcatatc 27122636  T
201 cccttcctagtgtcaccatcagagc 225  Q
    || |||| ||| |||| ||||||||    
27122635 cctttcccagtttcactatcagagc 27122611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 34486544 - 34486763
Alignment:
7 aaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacattt-cacttccctaaaaattaca 105  Q
    ||||| || |||||||||||| |||||| |||||||||||||||||| || |||||||||| |||||||| |||||||   ||||||| | ||||||| |    
34486544 aaaactttgctattaatataagaattctcccacaagatttaggatacaacattgactcatagcaaacatagttcacatagacacttccttgaaaattata 34486643  T
106 ataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattccctt 205  Q
    | |||||||| || |||||||||||||||||||||||||||||||| ||||||||||||| || ||||  | |||| |||||||||||| |||| || ||    
34486644 acaatattaatatcgaatcctttgcttttgaaaatactttcttttacatcatagaaaatggttttcttgcataaaagtaaataagtaagtatatcccttt 34486743  T
206 cctagtgtcaccatcagagc 225  Q
     |||||||||| ||||||||    
34486744 tctagtgtcactatcagagc 34486763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 14744581 - 14744782
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcat----aacaaacataattcacatttcacttcccta 96  Q
    ||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||| |||||||||    || |||||||||||||||||||||||| ||    
14744581 caaataaaaacttttctattaatataagaattcttccacaaaatttaggataccacattgactcataaaaaaaaaacataattcacatttcacttcctta 14744680  T
97 aaaattacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca 196  Q
    ||||||  |||| |||||| ||  |||  ||||||||| ||||||||||| |||| |||||||| |||| || |||| ||||||||||||||||||||||    
14744681 aaaattttaatactattaaaatcaaataatttgctttt-aaaatactttcctttacatcatagataatggttatcttgtacaaaactaaataagtaagca 14744779  T
197 tat 199  Q
    |||    
14744780 tat 14744782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 29 - 225
Target Start/End: Complemental strand, 22397468 - 22397272
Alignment:
29 aattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatccttt 128  Q
    |||||||||| ||||||||||||| ||||||||  |||||||||||||||||| ||||||||||  ||||||||| |||||||||| ||| ||||| |||    
22397468 aattcttccataagatttaggatatcacgttgaaacataacaaacataattcagatttcacttcattaaaaattataataatattatcatcgaatctttt 22397369  T
129 gcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcaccatcagagc 225  Q
    |||||||||||||||| |||||| |||||||| || | || |||| |||||||| |||||||||||||||| || || |  ||||||| ||||||||    
22397368 gcttttgaaaatacttgcttttacatcatagacaaaggttttcttgtacaaaacgaaataagtaagcatatcccttttcccgtgtcactatcagagc 22397272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31515511 - 31515286
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| ||||||||||||||| |||||||   |||||||||||||| ||| |||||||||||||||||||||||| ||||| ||||| | ||||    
31515511 caaataaaaacttttctattaatataagaattcttttgcaagatttaggatatcacattgactcataacaaacataattcaaatttcccttccttgaaaa 31515412  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaact-aaataagtaagcatat 199  Q
    |||  ||||||||||||||||||| |||||||||||||||| ||||| ||| |||| |   ||||||| |||| ||||||| | ||| ||||||||||||    
31515411 ttattataatattaacattgaatcttttgcttttgaaaataatttctattacatcacaagcaatgattttcttgtacaaaattaaaaaaagtaagcatat 31515312  T
200 tcccttcctagtgtcaccatcagagc 225  Q
     || || |  ||||||| ||||||||    
31515311 cccttttcccgtgtcactatcagagc 31515286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 8885087 - 8885308
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataat-tcacatttcacttccctaaaa 99  Q
    ||||||||||| ||| || |||||||| |||||||||||||||||||||||| |||    ||| |||||||||||||| || | |||||||||| | |||    
8885087 caaataaaaacttttttaataatataagaattcttccacaagatttaggatatcac----acttataacaaacataatatcgc-tttcacttccttgaaa 8885181  T
100 attacaataatattaacattgaatcctttgcttttgaaaa-tactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcata 198  Q
    |||| ||| ||||||||||  |||| ||||||||| |||| |||||||||||| |||||||| |||| || | || ||||||| ||||||||||||||||    
8885182 attataatcatattaacatcaaatcttttgcttttcaaaaatactttcttttacatcatagacaatggtttttttgtacaaaattaaataagtaagcata 8885281  T
199 ttcccttcctagtgtcaccatcagagc 225  Q
    ||| ||| || ||||||| || |||||    
8885282 ttctctttctcgtgtcactattagagc 8885308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 339 - 524
Target Start/End: Complemental strand, 8794999 - 8794808
Alignment:
339 ttcaccaccttctttgaatcaagctcgttatcaacatattctacattgaaatcatgtacctgattgagggctataaaaaagaccaagtgcttcacccaca 438  Q
    |||||||| |||||||||| |||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
8794999 ttcaccactttctttgaataaagctcgccatcaacatattctacattgaaatcatgaacctgattgagggctataaaaaagaccaagtgcttcacccaca 8794900  T
439 tgcaaatcaaacataggtgagaaccattccattttaagtgcttca------cccaactcatctctaatacatatatcaatacccactttatt 524  Q
     ||||||||||||||||||||||||||| |||||||  |    ||      | |||||||||||||||||||||||||||| ||||||||||    
8794899 agcaaatcaaacataggtgagaaccattgcattttagctaacacaaaggctctcaactcatctctaatacatatatcaatatccactttatt 8794808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 8795083 - 8794995
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcac 89  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||    
8795083 caaataaaaacctttctattaatataaaaattctcccacaaaatttaggataccacattaactcataacaaacataattcacatttcac 8794995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 19018914 - 19019033
Alignment:
105 aataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattccct 204  Q
    |||||||||||||| |||   ||| ||||| |||||||||||||||| |||||| | |||  || |||  ||||||||||||||||||||||||| || |    
19018914 aataatattaacatcgaaatttttacttttaaaaatactttcttttacatcataaacaattgttttctagtacaaaactaaataagtaagcatatccctt 19019013  T
205 tcctagtgtcaccatcagag 224  Q
    | |  ||||||| |||||||    
19019014 ttcccgtgtcactatcagag 19019033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 6820372 - 6820570
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| ||   |||||||||| |||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||  | ||||    
6820372 caaataaaaactttcaaattaatataagaatttttccacaagatttaggataccacattgacacatagcaaacataattcacatttcacttctttgaaaa 6820471  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat 199  Q
    ||| |||||||||||||| ||||| ||| |||||||||||| ||||||||| |||||| | |||| || |||| |||||||||||||||||||||||||    
6820472 ttataataatattaacatcgaatctttttcttttgaaaatattttcttttacatcataaacaatggttttcttatacaaaactaaataagtaagcatat 6820570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 17417604 - 17417802
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| | |||| |||||||  |||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||  |||| |    
17417604 caaataaaaacttctctaataatataggaattcttccacaagatttaggatatcacattgactcataacaaacataattcatatttcacttcattaaata 17417703  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat 199  Q
    ||| ||||||||||||||  |||| |||||||||||||||||||||||||| |||||| | |||  || |||| |||||||| |||||| |||||||||    
17417704 ttataataatattaacatcaaatcttttgcttttgaaaatactttcttttacatcatatacaatagttttcttgtacaaaacgaaataattaagcatat 17417802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 4 - 225
Target Start/End: Complemental strand, 19729515 - 19729294
Alignment:
4 ataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaatta 103  Q
    |||||||| | |||| |||||||  |||||||||||||||||||||||| ||| ||||||||||||||||||||| || | ||||||||  |||||||      
19729515 ataaaaacttctctaataatataggaattcttccacaagatttaggatatcacattgactcataacaaacataatccagacttcacttcattaaaaatcg 19729416  T
104 caataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattccc 203  Q
     ||||  ||||| || ||||| |||||||||||||||||||||||||| |||||||  |||| || | || |||||||| |||||||||||||||| ||     
19729415 taatagcattaatatcgaatcttttgcttttgaaaatactttcttttacatcatagtcaatggtttttttgtacaaaacgaaataagtaagcatatccct 19729316  T
204 ttcctagtgtcaccatcagagc 225  Q
    || |  ||||||| ||||||||    
19729315 tttcccgtgtcactatcagagc 19729294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 3577329 - 3577142
Alignment:
20 taatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacatt 119  Q
    |||||||| |||||||||||||||||||||||| ||| ||  ||||||||||| |||||||||||||||||||  |||||||||         ||||||     
3577329 taatataagaattcttccacaagatttaggatatcacattacctcataacaaagataattcacatttcacttctttaaaaatta---------taacatc 3577239  T
120 gaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattcccttcctagtgtcac 216  Q
    ||||| | |||||||||||||||||||||||| ||||||||||||  || |||| |||||| ||||||||||||| |||| || |||||||||||||    
3577238 gaatcatgtgcttttgaaaatactttcttttacatcatagaaaatagttttcttatacaaagctaaataagtaagaatatccctttcctagtgtcac 3577142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 10665 - 10438
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacat-ttcacttccctaaaa 99  Q
    ||||||||||| ||||||||||| ||| |||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||   ||||||| | |||    
10665 caaataaaaacttttctattaatttaagaattctcccacaagatttaggataccacattgactcataacagacataattcacataaacacttccttgaaa 10566  T
100 att---acaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca 196  Q
    |||   | |||||||||||||| |||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||   ||||| |||||||||||| |    
10565 attataataataatattaacatcgaat-cttggcttttgaaaatactttcttttacatcatagaaaatgattttcttgcgcaaaattaaataagtaagta 10467  T
197 tattcccttcctagtgtcaccatcagagc 225  Q
    ||| || |||| |||||||| ||||||||    
10466 tatccctttcccagtgtcactatcagagc 10438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 5e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 17863318 - 17863093
Alignment:
5 taaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattac 104  Q
    ||||||| | |||| |||||||  |||||||||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||  ||||||| |     
17863318 taaaaacttctctaataatataggaattcttccacaagatttaggatatcacattgactcataacaaacataattcagacttcacttcattaaaaatcat 17863219  T
105 aataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttt-----tacaaaactaaataagtaagcatat 199  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||  |||| || | |||     |||||||| ||||||||||||||||    
17863218 aataatattaacatcgaatcttttgcttttgaaaatactttcttttacatcatagtcaatggttttttttttttgtacaaaacgaaataagtaagcatat 17863119  T
200 tcccttcctagtgtcaccatcagagc 225  Q
     || || |  ||||||||||||||||    
17863118 cccttttcccgtgtcaccatcagagc 17863093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 11284168 - 11283976
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaa 100  Q
    ||||||||||| ||| |  |||||||| ||||||||||||| |||||||||| ||| ||||||||      ||||||| || ||||||||||| | ||||    
11284168 caaataaaaacttttatgataatataagaattcttccacaaaatttaggatatcacattgactca------acataatacaaatttcacttccttgaaaa 11284075  T
101 ttacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat 199  Q
    ||| |||||||| ||||||||||| ||||||| |||||||||||||||||| |||||||| |||| ||  ||| |||||||||||||||||||||||||    
11284074 ttataataatatgaacattgaatcttttgcttatgaaaatactttcttttacatcatagacaatggtttccttgtacaaaactaaataagtaagcatat 11283976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 19185 - 18989
Alignment:
1 caaataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaa---cataattcacatttcacttccctaa 97  Q
    ||||||||||| | ||||||||| ||| ||||||||||||| |||||||||| ||| |||||| |||| |||   ||||||||||||||||||||  | |    
19185 caaataaaaacttgtctattaatttaagaattcttccacaaaatttaggatatcacattgacttataaaaaaaaccataattcacatttcacttctttga 19086  T
98 aaattacaataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaag 194  Q
    |||||  |||| ||| |||||  |||| |||||||||||||||||| ||||||| |||||||| |||| || |||| ||||||||||||||||||||    
19085 aaattgtaatactatcaacatcaaatcttttgcttttgaaaatactctcttttacatcatagataatggttatcttgtacaaaactaaataagtaag 18989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 81; Significance: 7e-38; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 141260 - 141456
Alignment:
4 ataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaatta 103  Q
    |||||||| |||||| |||||||  ||||||||||||| |||||| ||| ||| |||||||||||||||||||||||| | ||||||||  ||||||| |    
141260 ataaaaacttttctaataatataggaattcttccacaaaatttagtatatcacattgactcataacaaacataattcagacttcacttcattaaaaatca 141359  T
104 caataatattaacattgaatcctttgctttt-gaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatat 199  Q
     ||||| ||| |||| ||||| |||||||||  |||||||||||||||| |||||||  |||| || | || |||||||| ||||||||||||||||    
141360 taataacattgacatcgaatcttttgcttttaaaaaatactttcttttacatcatagtcaatgttttttttgtacaaaacgaaataagtaagcatat 141456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 4 - 199
Target Start/End: Complemental strand, 2490 - 2293
Alignment:
4 ataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaatta 103  Q
    |||||||| | |||| |||||||  |||||||||||||||||||||||| ||| ||||||| |||||||||||||||| | ||||||||  ||||||| |    
2490 ataaaaacttctctaataatataggaattcttccacaagatttaggatatcacattgactcgtaacaaacataattcagacttcacttcattaaaaatca 2391  T
104 caataatattaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttt--tacaaaactaaataagtaagcatat 199  Q
     ||||| ||||| || ||||| |||||||||||||||||||||||||| ||||| |  |||| || | |||  |||||||  ||||||||||||||||    
2390 taataacattaaaatcgaatcttttgcttttgaaaatactttcttttacatcatggtcaatggtttttttttgtacaaaatgaaataagtaagcatat 2293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 13 - 196
Target Start/End: Complemental strand, 3090331 - 3090147
Alignment:
13 tttctattaatataaaaattcttccacaagatttaggata--ccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataat 110  Q
    ||||||||||||||  ||||||||||||||||||||||||  |||  |||||||||||    |||||||||||||| |||||  | ||||||  |||| |    
3090331 tttctattaatatatgaattcttccacaagatttaggatataccatattgactcataatgt-cataattcacattttacttctttgaaaattgtaatact 3090233  T
111 attaacattgaatcctttgcttttgaaaatactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagca 196  Q
    ||||||||  |||| |||||||||||||||||||||||||| |||||||| |||| || |||| ||||||||||||||||||||||    
3090232 attaacatcaaatcttttgcttttgaaaatactttcttttacatcatagataatggttatcttgtacaaaactaaataagtaagca 3090147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 4 - 118
Target Start/End: Complemental strand, 16075002 - 16074888
Alignment:
4 ataaaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaatta 103  Q
    |||||||| | |||| |||||||  |||||||||||||||||||||||| ||| |||||||||||||||||||| ||| ||||||||||  |||||||||    
16075002 ataaaaacttctctaataatataggaattcttccacaagatttaggatatcacattgactcataacaaacataactcagatttcacttcattaaaaatta 16074903  T
104 caataatattaacat 118  Q
     ||||||||||||||    
16074902 taataatattaacat 16074888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 5046419 - 5046252
Alignment:
25 taaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaataatattaacattgaatc 124  Q
    |||||||| ||  ||||| |||| ||| |||| ||||||| ||||||| ||||| |||| ||||||||| |||||| || |||||||| ||||   | |     
5046419 taaaaattatttaacaaggtttaagattccacattgactcgtaacaaa-ataatccacaattcacttccttaaaaaataaaataatatcaacaacaatta 5046321  T
125 ctttgcttttgaaaatactttcttttaaatcatagaaaatgattct-cttttacaaaactaaataagta 192  Q
    ||||| |||||| |||| ||| | ||| |||||||||||| ||| | ||| |||| |||||||||||||    
5046320 ctttgattttgagaataatttttgttacatcatagaaaataattttccttgtacataactaaataagta 5046252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 7 - 221
Target Start/End: Complemental strand, 60398 - 60185
Alignment:
7 aaaacctttctattaatataaaaattcttccacaagatttaggataccacgttgactcataacaaacataattcacatttcacttccctaaaaattacaa 106  Q
    ||||| || |||| ||||||| |||||| |  |||||||||||| ||||  ||||||||||| |||||||| ||||||   |   || | ||||||| ||    
60398 aaaactttgctatgaatataagaattctccttcaagatttaggacaccaaattgactcataataaacataactcacata--aacaccttgaaaattataa 60301  T
107 taatattaacattgaatcctttgcttttgaaaa-tactttcttttaaatcatagaaaatgattctcttttacaaaactaaataagtaagcatattccctt 205  Q
    |||||||||||| ||||||||||||||| |||| |||||||||||| ||||||||||||| || ||||  |||||| |||||||||||| |||| |||||    
60300 taatattaacatcgaatcctttgcttttaaaaaatactttcttttacatcatagaaaatggttttcttacacaaaagtaaataagtaagtatatcccctt 60201  T
206 cctagtgtcaccatca 221  Q
    ||||||||||| ||||    
60200 cctagtgtcactatca 60185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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